for e in taxg.edges():
src = e.source()
tgt = e.target()
if not verts[src]:
verts[src] = 1
pos[src] = [0.0, 0.0]
vcolor[src] = 'red'
if not verts[tgt]:
verts[tgt] = 1
pos[tgt] = [0.0, 0.0]
vcolor[tgt] = 'red'
if not edges[e]:
edges[e] = 1
ecolor[e] = 'red'
ewidth[e] = 1.0
gv.wt[e] = 1.0
pos = gt.sfdp_layout(gv, pos=pos, pin=pin, eweight=gv.wt, multilevel=False)
gt.interactive_window(gv,
pos=pos,
pin=True,
vertex_fill_color=vcolor,
vertex_text_position=3.1415,
vertex_text=taxg.vertex_name,
vertex_size=vsize,
edge_color=ecolor,
edge_pen_width=ewidth,
update_layout=False)
for e in taxg.edges():
src = e.source()
tgt = e.target()
if not verts[src]:
verts[src] = 1
pos[src] = [0.0, 0.0]
vcolor[src] = 'red'
if not verts[tgt]:
verts[tgt] = 1
pos[tgt] = [0.0, 0.0]
vcolor[tgt] = 'red'
if not edges[e]:
edges[e] = 1
ecolor[e] = 'red'
ewidth[e] = 1.0
gv.wt[e] = 1.0
pos = gt.sfdp_layout(gv, pos=pos, pin=pin, eweight=gv.wt, multilevel=False)
gt.interactive_window(
gv, pos=pos, pin=True,
vertex_fill_color=vcolor,
vertex_text_position=3.1415,
vertex_text=taxg.vertex_name,
vertex_size=vsize,
edge_color=ecolor,
edge_pen_width=ewidth,
update_layout=False
)
deg.fa = 2*(numpy.sqrt(deg.fa)*0.5 + 0.4)
edg = f_g.edge_properties['cofield']
edg.fa = (numpy.sqrt(edg.fa)*0.6+1)
ebet = gt.betweenness(f_g)[1]
# <codecell>
# <codecell>
pos, int = gt.interactive_window(u, pos=gt.radial_tree_layout(f_g, f_g.vertex(1)),
vertex_size = deg,
vertex_fill_color = v_comm,
vertex_text = f_g.vertex_properties['field'],
vertex_text_position = 0.2,
vertex_font_size = 9,
vertex_font_family = 'sans serif',
edge_pen_width = edg,
edge_color=ebet,
output_size = (800,1200)
)
# <codecell>
# <codecell>
gt.graph_draw(f_g, pos=pos,
vertex_size = deg,
vertex_fill_color = v_comm,
vertex_text = f_g.vertex_properties['field'],
vtext = gv.new_vertex_property('string')
for v in gv.vertices():
if v.out_degree():
s = taxg.vertex_name[v]
vtext[v] = s
dprops = gv.new_vertex_property('string')
for v in gv.vertices():
st = str(list(taxg.vertex_strees[v]))
s = taxg.vertex_name[v]
if not s:
s = str([ taxg.taxid_name(x) for x in taxg.vertex_stem_cdef[v] ])
s = '%s: %s' % (st, s)
dprops[v] = s
pos, pin = tg.layout(taxg, gv, root, sfdp=True, deg0=190.0,
degspan=160.0, radius=1000)
gt.interactive_window(
gv, pos=pos, pin=True,
vertex_fill_color=vcolor,
vertex_text_position=3.1415,
vertex_text=vtext,
vertex_size=vsize,
vertex_pen_width=0,
edge_color=ecolor,
edge_pen_width=ewidth,
display_props=dprops,
update_layout=False
)
dprops = gv.new_vertex_property('string')
for v in gv.vertices():
st = str(list(taxg.vertex_strees[v]))
s = taxg.vertex_name[v]
if not s:
s = str([taxg.taxid_name(x) for x in taxg.vertex_stem_cdef[v]])
s = '%s: %s' % (st, s)
dprops[v] = s
pos, pin = tg.layout(taxg,
gv,
root,
sfdp=True,
deg0=190.0,
degspan=160.0,
radius=1000)
gt.interactive_window(gv,
pos=pos,
pin=True,
vertex_fill_color=vcolor,
vertex_text_position=3.1415,
vertex_text=vtext,
vertex_size=vsize,
vertex_pen_width=0,
edge_color=ecolor,
edge_pen_width=ewidth,
display_props=dprops,
update_layout=False)
