def _createPreProcFiles(self):
geSource = self._geSourceManager.getGESource()
genome = geSource.genome
collector = PreProcMetaDataCollector(genome, self._trackName)
collector.updateMetaDataForFinalization(geSource.getFileSuffix(), geSource.getPrefixList(), \
geSource.getValDataType(), geSource.getValDim(), \
geSource.getEdgeWeightDataType(), geSource.getEdgeWeightDim(), \
geSource.hasUndirectedEdges(),
geSource.getVersion(), PreProcessUtils.constructId(geSource), \
self._geSourceManager.getNumElements(), \
self._geSourceManager.getBoundingRegionTuples(), \
self._geSourceManager.getValCategories(), \
self._geSourceManager.getEdgeWeightCategories(), \
self._allowOverlaps)
if self._geSourceManager.getNumElements() == 0:
return
if self._mode != 'Real':
for ge in geSource:
pass
return
output = OutputManager(genome, self._trackName, self._allowOverlaps, self._geSourceManager)
writeFunc = output.writeRawSlice if geSource.isSliceSource() else output.writeElement
for ge in geSource:
writeFunc(ge)
collector.flagChrsAsPreProcessed(self._allowOverlaps, self._geSourceManager.getAllChrs())
output.close()
