def option_controller( self, *args, **kwargs ) :
PipelineFrame.option_controller( self )
self.Pipeline.set( self.label2pipeline[self.PipelineLabel.get()] )
print( self.Pipeline.get() )
if self.Pipeline.get() == 'cellranger' :
self.clusterOpts.grid_forget()
self.crOpts.grid(row=8,column=0, columnspan=6, sticky=W, padx=20, pady=10 )
self.qcOpts.grid_forget()
self.multiclusterOpts.grid_forget()
elif self.Pipeline.get() == 'scrnaseqcluster' :
self.clusterOpts.grid( row=8, column=0, columnspan=4, sticky=W, padx=20, pady=10 )
self.crOpts.grid_forget()
self.qcOpts.grid_forget()
self.multiclusterOpts.grid_forget()
elif self.Pipeline.get() == 'scrnaseqinit' :
self.clusterOpts.grid_forget()
self.crOpts.grid_forget()
self.qcOpts.grid( row=8, column=0, columnspan=4, sticky=W, padx=20, pady=10 )
self.multiclusterOpts.grid_forget()
elif self.Pipeline.get() == 'scrnaseqmulticluster' :
self.clusterOpts.grid_forget()
self.crOpts.grid_forget()
self.qcOpts.grid_forget()
self.multiclusterOpts.grid( row=8, column=0, columnspan=4, sticky=W, padx=20, pady=10 )
def option_controller(self, *args, **kwargs):
PipelineFrame.option_controller(self)
self.Pipeline.set(self.label2pipeline[self.PipelineLabel.get()])
print(self.Pipeline.get())
if self.Pipeline.get() == 'initialqcrnaseq':
self.om4.grid_forget()
self.sampleLF.grid_forget()
self.info.grid_forget()
elif self.Pipeline.get() == 'rnaseq':
self.om4.grid(row=6, column=1, sticky=W, padx=10, pady=5)
self.sampleLF.grid(row=8,
column=0,
columnspan=4,
sticky=W,
padx=20,
pady=10)
self.info.grid(row=10,
column=0,
columnspan=6,
sticky=W,
padx=20,
pady=10)
else:
self.om4.grid_forget()
self.sampleLF.grid_forget()
self.info.grid_forget()
def option_controller( self, *args, **kwargs ) :
PipelineFrame.option_controller( self )
if self.Pipeline.get() == 'exomeseq-somatic' :
self.add_pairs( self.eframe )
#self.dry_button.config( state="disabled" )
elif self.Pipeline.get() != 'exomeseq-somatic' :
self.del_pairs( self.eframe )
def option_controller(self, *args, **kwargs):
PipelineFrame.option_controller(self)
self.Pipeline.set(self.label2pipeline[self.PipelineLabel.get()])
print(self.Pipeline.get())
if self.Pipeline.get() == 'exomeseq-somatic':
self.add_pairs(self.eframe)
#self.dry_button.config( state="disabled" )
elif self.Pipeline.get() != 'exomeseq-somatic':
self.del_pairs(self.eframe)
def option_controller( self, *args, **kwargs ) :
PipelineFrame.option_controller( self )
self.Pipeline.set( self.label2pipeline[self.PipelineLabel.get()] )
print( self.Pipeline.get() )
if self.Pipeline.get() == 'wgs-somatic' :
self.add_pairs( self.eframe )
#self.dry_button.config( state="disabled" )
elif self.Pipeline.get() != 'wgs-somatic' :
self.del_pairs( self.eframe )
def option_controller(self, *args, **kwargs):
PipelineFrame.option_controller(self)
if self.Pipeline.get() == 'InitialChIPseqQC':
self.info.grid_forget()
else:
self.info.grid(row=7,
column=0,
columnspan=6,
sticky=W,
padx=20,
pady=10)
def option_controller(self, *args, **kwargs):
PipelineFrame.option_controller(self)
if self.Pipeline.get() == 'initialqcrnaseq':
self.om4.grid_forget()
self.sampleLF.grid_forget()
else:
self.om4.grid(row=6, column=1, sticky=W, padx=10, pady=5)
self.sampleLF.grid(row=8,
column=0,
columnspan=4,
sticky=W,
padx=20,
pady=10)
def option_controller(self, *args, **kwargs):
PipelineFrame.option_controller(self)
self.Pipeline.set(self.label2pipeline[self.PipelineLabel.get()])
print(self.Pipeline.get())
if self.Pipeline.get() == 'miRSeq_v2':
self.novelMirsFrame.grid(row=5,
column=0,
columnspan=4,
sticky=W,
padx=20,
pady=10)
elif self.Pipeline.get() == "CAPmirseq-plus":
self.novelMirsFrame.grid_forget()
def option_controller(self, *args, **kwargs):
PipelineFrame.option_controller(self)
self.Pipeline.set(self.label2pipeline[self.PipelineLabel.get()])
print(self.Pipeline.get())
if self.Pipeline.get() == 'cellranger':
self.clusterOpts.grid_forget()
self.crOpts.grid(row=8,
column=0,
columnspan=6,
sticky=W,
padx=20,
pady=10)
self.qcOpts.grid_forget()
self.multiclusterOpts.grid_forget()
elif self.Pipeline.get() == 'scrnaseqcluster':
self.clusterOpts.grid(row=8,
column=0,
columnspan=4,
sticky=W,
padx=20,
pady=10)
self.crOpts.grid_forget()
self.qcOpts.grid_forget()
self.multiclusterOpts.grid_forget()
elif self.Pipeline.get() == 'scrnaseqinit':
self.clusterOpts.grid_forget()
self.crOpts.grid_forget()
self.qcOpts.grid(row=8,
column=0,
columnspan=4,
sticky=W,
padx=20,
pady=10)
self.multiclusterOpts.grid_forget()
elif self.Pipeline.get() == 'scrnaseqmulticluster':
self.clusterOpts.grid_forget()
self.crOpts.grid_forget()
self.qcOpts.grid_forget()
self.multiclusterOpts.grid(row=8,
column=0,
columnspan=4,
sticky=W,
padx=20,
pady=10)
def option_controller(self, *args, **kwargs):
PipelineFrame.option_controller(self)
if self.Pipeline.get() == 'InitialChIPseqQC':
self.info.grid_forget()
self.om_peaks.grid(row=7,
column=0,
columnspan=6,
sticky=W,
padx=20,
pady=10)
elif self.Pipeline.get() == 'ChIPseq':
self.info.grid(row=7,
column=0,
columnspan=6,
sticky=W,
padx=20,
pady=10)
contrast_file = join(self.workpath.get(), self.contrast_fn)
print(contrast_file)
if not os.path.exists(contrast_file):
open(contrast_file, 'a').close()
def option_controller(self, *args, **kwargs):
PipelineFrame.option_controller(self)
self.Pipeline.set(self.label2pipeline[self.PipelineLabel.get()])
print(self.Pipeline.get())
if self.Pipeline.get() == 'scrnaQC':
self.deOptions.grid_forget()
self.qcOptions.grid(row=8,
column=0,
columnspan=6,
sticky=W,
padx=20,
pady=10)
elif self.Pipeline.get() == 'scrnaDE':
self.deOptions.grid(row=8,
column=0,
columnspan=4,
sticky=W,
padx=20,
pady=10)
self.qcOptions.grid_forget()
def option_controller( self, *args, **kwargs ) :
PipelineFrame.option_controller( self )
if self.Pipeline.get() == 'InitialChIPseqQC' :
self.info.grid_forget()
else :
self.info.grid(row=7,column=0, columnspan=6, sticky=W, padx=20, pady=10 )
