def test_createTaxonAbbreviationsFull(self):
taxon_abbreviations, uris, taxon_ontology = halias_helpers.createTaxonAbbreviations(TAXON_INPUT_FILE,
INPUT_FILE_DIRECTORY + 'lisataksonit_avioon.ttl',
INPUT_FILE_DIRECTORY + "avio_ripustukset_halias.ttl",
INPUT_FILE_DIRECTORY + "suomen_lintulajit.txt",
INPUT_FILE_DIRECTORY + "halias_taksonit.txt")
# pprint.pprint(taxon_abbreviations)
# Custom abbreviations
self.assert_("bom/st" in taxon_abbreviations)
self.assert_("bomstu" in taxon_abbreviations)
self.assert_("egralb" in taxon_abbreviations)
# Generated abbreviations
self.assert_("anapla" in taxon_abbreviations)
self.assert_("tadtad" in taxon_abbreviations)
self.assert_("embele" in taxon_abbreviations)
self.assert_("parsp" in taxon_abbreviations)
self.assert_("nycsca" in taxon_abbreviations)
self.assert_("stecas" in taxon_abbreviations)
self.assert_("oensp" in taxon_abbreviations)
self.assert_("ardalb" not in taxon_abbreviations)
self.assert_("ard sp" not in taxon_abbreviations)
self.assert_(taxon_abbreviations["bom/st"] in uris)
self.assert_(taxon_abbreviations["bomstu"] in uris)
self.assert_(uris[taxon_abbreviations["bom/st"]] == "bomstu")
self.assert_(uris[taxon_abbreviations["bomstu"]] == "bomstu")
def test_createTaxonAbbreviations(self):
taxon_abbreviations, uris, taxon_ontology = halias_helpers.createTaxonAbbreviations(
"python_test_fixtures/test_avio.ttl",
"python_test_fixtures/test_extra_taxa.ttl",
"python_test_fixtures/test_extra_taxa.ttl",
INPUT_FILE_DIRECTORY + "suomen_lintulajit.txt",
INPUT_FILE_DIRECTORY + "halias_taksonit.txt")
self.assert_("bom/st" in taxon_abbreviations)
self.assert_("bomstu" in taxon_abbreviations)
self.assert_("egralb" in taxon_abbreviations)
self.assert_("anapla" in taxon_abbreviations)
self.assert_("ardalb" not in taxon_abbreviations)
# self.assert_("ard sp" not in taxon_abbreviations)
self.assert_(taxon_abbreviations["bom/st"] in uris)
self.assert_(taxon_abbreviations["bomstu"] in uris)
self.assert_(uris[taxon_abbreviations["bom/st"]] == "bomstu")
self.assert_(uris[taxon_abbreviations["bomstu"]] == "bomstu")
