async def show_messages(message, args):
channels = find_channel_mentions_in_message(message, args)
for channel in channels:
limit = int(args[0]) if args else 10
messages = await channel.history(limit=limit).flatten()
shorten_size = int(args[1]) if len(args) > 1 else 50
msg = format_list([format_message(msg, shorten_size=shorten_size) for msg in messages])
await long_send(message.channel, msg, quotes=False)
if __name__ == '__main__':
start = time.time()
parser = argparse.ArgumentParser('....')
parser.add_argument('--sample',
default=False,
action='store_true',
help='process sample dataset')
parser.add_argument('--rosalind',
default=False,
action='store_true',
help='process Rosalind dataset')
args = parser.parse_args()
if args.sample:
for line in itwv('GACCACGGTT', ['ACAG', 'GT', 'CCG']):
print(format_list(line))
if args.rosalind:
Input = read_strings(
f'data/rosalind_{os.path.basename(__file__).split(".")[0]}.txt')
Result = itwv(Input[0], Input[1:])
with open(f'{os.path.basename(__file__).split(".")[0]}.txt', 'w') as f:
for line in Result:
out = format_list(line)
f.write(f'{out}\n')
elapsed = time.time() - start
minutes = int(elapsed / 60)
seconds = elapsed - 60 * minutes
print(f'Elapsed Time {minutes} m {seconds:.2f} s')
# Copyright (C) 2019 Greenweaves Software Limited
#
# This is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This software is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with GNU Emacs. If not, see <http://www.gnu.org/licenses/>
# BIP Testing Bipartiteness
from helpers import format_list, parse_graphs
from graphs import bip
if __name__ == '__main__':
with open(r'C:\Users\Simon\Downloads\rosalind_bip(3).txt') as f:
print(format_list([bip(g) for g in parse_graphs(f)]))
#
# This is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This software is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with GNU Emacs. If not, see <http://www.gnu.org/licenses/>
#
# TS Topological sort
from align import topological_order
from helpers import parse_graph, create_adjacency, format_list
if __name__ == '__main__':
with open(r'C:\Users\Simon\Downloads\rosalind_ts.txt') as f:
g = parse_graph(f)
_, _, adj = create_adjacency(g, back=False)
for k, v in adj.items():
if k in v:
v.remove(k)
t = topological_order(adj)
print(format_list(t))