def __init__(self, graph,verbose=0):
"""Constructor
Intialize an instance of `Imputation` with a py2neo graph
and a `CypherQuery` object.
"""
self.graph = graph
self.cypher = CypherQuery()
def __init__(self, graph, populations):
"""Constructor
Intialize an instance of `Imputation` with a py2neo graph
and a `CypherQuery` object.
"""
# graph is a link to the graph and populations is the list of populations
self.graph = graph
self.cypher = CypherQuery()
self.populations = populations
def test_build_query():
cypher = CypherQuery()
for haplo in expected["buildQuery"].keys():
assert_equal(cypher.buildQuery([haplo]), expected["buildQuery"][haplo],
haplo)
def test_get_path():
cypher = CypherQuery()
for haplo in expected["getPath"].keys():
assert_equal(cypher.getPath([haplo]), expected["getPath"][haplo],
haplo)
def test_get_locus():
cypher = CypherQuery()
for allele in expected["getLocus"].keys():
assert_equal(cypher.getLocus(allele), expected["getLocus"][allele],
allele)
def test_constructer():
cypher = CypherQuery()
assert_true(inspect.isclass(CypherQuery))
assert_equal(cypher.__class__.__name__, "CypherQuery")
assert_equal(str(type(cypher)),
"<class \'hf_cypher.cypherQuery.CypherQuery\'>")