def findNode (current, toFind, path, dbCursor):
if current in path:
return
path = list(path)
path.append(current)
# Base Case
if current == toFind:
print "Relationship Pathway FOUND!"
print "Pathway: {}".format(translateList(path, dbCursor))
sys.exit()
# Establish string for queries
query = "SELECT CUI1, REL, CUI2, SAB from MRREL where CUI2 = '{}'" \
"AND SAB = 'MTH' AND (REL = 'RN' OR REL = 'CHD')"
# Establish connection and query MySQL database
try:
# Executue a query serach
dbCursor.execute (query.format(current))
# Catch errors from MySQL
except MySQLdb.Error, e:
try:
# Prints the error
print "MySQL Error [{}]: {} --- while querying {}".format(\
e.args[0], e.args[1], current)
except IndexError:
# Prints the 1 argument error
print "MySQL Error: {} --- while querying {}".format(str(e),\
current)
sys.exit()
def findNode(current, toFind, path, dbCursor):
if current in path:
return
path = list(path)
path.append(current)
# Base Case
if current == toFind:
print "Relationship Pathway FOUND!"
print "Pathway: {}".format(translateList(path, dbCursor))
sys.exit()
# Establish string for queries
query = "SELECT CUI1, REL, CUI2, SAB from MRREL where CUI2 = '{}'" \
"AND SAB = 'MTH' AND (REL = 'RN' OR REL = 'CHD')"
# Establish connection and query MySQL database
try:
# Executue a query serach
dbCursor.execute(query.format(current))
# Catch errors from MySQL
except MySQLdb.Error, e:
try:
# Prints the error
print "MySQL Error [{}]: {} --- while querying {}".format(\
e.args[0], e.args[1], current)
except IndexError:
# Prints the 1 argument error
print "MySQL Error: {} --- while querying {}".format(str(e),\
current)
sys.exit()
if cui1 not in childrenSet:
parentList.append(cui1)
# Tracks time taken
if debugOn:
currentTime = datetime.now()
print "Took: {}".format(currentTime - lastTime)
lastTime = currentTime
else:
print "Done!"
# If debugging is on, translate the dictionaries and lists prematurely
if debugOn:
sys.stdout.write(
"Step 2.5 of 6: Translating Relations (DEBUG MODE) . . . ")
topTier = translateList(topTier, cur)
relationsDict = translateDictionary(relationsDict, cur)
leaves = translateList(leaves, cur)
currentTime = datetime.now()
print "Took: {}".format(currentTime - lastTime)
lastTime = currentTime
# Progress Message
sys.stdout.write("Step 3 of 6: Building Initial Hierarchy . . . ")
# Will hold the hierarchy while being built and cleaned up
inProgressHier = defaultdict(list)
# Keeps tracks of loops encountered
loopsDict = defaultdict(list)
# then add it to the parentList
if cui1 not in childrenSet:
parentList.append(cui1)
# Tracks time taken
if debugOn:
currentTime = datetime.now()
print "Took: {}".format(currentTime - lastTime)
lastTime = currentTime
else:
print "Done!"
# If debugging is on, translate the dictionaries and lists prematurely
if debugOn:
sys.stdout.write( "Step 2.5 of 6: Translating Relations (DEBUG MODE) . . . ")
topTier = translateList( topTier, cur )
relationsDict = translateDictionary( relationsDict, cur )
leaves = translateList( leaves, cur )
currentTime = datetime.now()
print "Took: {}".format(currentTime - lastTime)
lastTime = currentTime
# Progress Message
sys.stdout.write("Step 3 of 6: Building Initial Hierarchy . . . ")
# Will hold the hierarchy while being built and cleaned up
inProgressHier = defaultdict(list)
# Keeps tracks of loops encountered
loopsDict = defaultdict(list)
