def calculate(self, catalogue, config=None, completeness=None):
""" Calculation of b-value and its uncertainty for a given
catalogue, using the maximum likelihood method of Aki (1965),
with a correction for discrete bin width (Bender, 1983).
:param catalogue:
See :class:`hmtk.seismicity.occurrence.base.py' for further
explanation
:param config:
The configuration in this case do not contains specific
information
:keyword float completeness:
Completeness magnitude
:return float bval:
b-value of the Gutenberg-Richter relationship
:return float sigma_b:
Standard deviation of the GR b-value
"""
# Input checks
cmag, ctime, ref_mag, dmag = input_checks(catalogue, config,
completeness)
rt = recurrence_table(catalogue['magnitude'], dmag, catalogue['year'])
bval, sigma_b = self._aki_ml(rt[:,0], rt[:,1])
return bval, sigma_b
def calculate(self, catalogue, config=None, completeness=None):
""" Calculation of b-value and its uncertainty for a given
catalogue, using the maximum likelihood method of Aki (1965),
with a correction for discrete bin width (Bender, 1983).
:param catalogue:
See :class:`hmtk.seismicity.occurrence.base.py' for further
explanation
:param config:
The configuration in this case do not contains specific
information
:keyword float completeness:
Completeness magnitude
:return float bval:
b-value of the Gutenberg-Richter relationship
:return float sigma_b:
Standard deviation of the GR b-value
"""
# Input checks
_cmag, _ctime, _ref_mag, dmag, config = input_checks(
catalogue, config, completeness)
rt = recurrence_table(catalogue.data['magnitude'], dmag,
catalogue.data['year'])
bval, sigma_b = self._aki_ml(rt[:, 0], rt[:, 1])
return bval, sigma_b
def calculate(self, catalogue, config, completeness=None):
'''Main function to calculate the a- and b-value'''
# Input checks
cmag, ctime, ref_mag, dmag = input_checks(catalogue, config,
completeness)
ival = 0
mag_eq_tolerance = 1E-5
number_intervals = np.shape(ctime)[0]
b_est = np.zeros(number_intervals, dtype=float)
neq = np.zeros(number_intervals, dtype=float)
nyr = np.zeros(number_intervals, dtype=float)
for ival in range(0, number_intervals):
id0 = np.abs(ctime - ctime[ival]) < mag_eq_tolerance
m_c = np.min(cmag[id0])
if ival == number_intervals - 1:
id1 = np.logical_and(
catalogue['year'] >= ctime[ival], catalogue['magnitude'] >=
(m_c - mag_eq_tolerance))
else:
id1 = np.logical_and(catalogue['year'] >= ctime[ival],
catalogue['year'] < ctime[ival + 1])
id1 = np.logical_and(
id1, catalogue['magnitude'] >= (m_c - mag_eq_tolerance))
# while ival < number_intervals:
# id0 = np.abs(ctime - ctime[ival]) < mag_eq_tolerance
# m_c = np.min(cmag[id0])
# # Find events later than cut-off year, and with magnitude
# # greater than or equal to the corresponding completeness magnitude.
# # m_c - mag_eq_tolerance is required to correct floating point
# # differences.
# id1 = np.logical_and(catalogue['year'] >= ctime[ival],
# catalogue['magnitude'] >= (m_c - mag_eq_tolerance))
nyr[ival] = np.float(
np.max(catalogue['year'][id1]) -
np.min(catalogue['year'][id1]) + 1)
neq[ival] = np.sum(id1)
# Get a- and b- value for the selected events
temp_rec_table = recurrence_table(catalogue['magnitude'][id1],
dmag, catalogue['year'][id1])
aki_ml = AkiMaxLikelihood()
b_est[ival] = aki_ml._aki_ml(temp_rec_table[:, 0],
temp_rec_table[:, 1], dmag, m_c)[0]
ival += 1
total_neq = np.float(np.sum(neq))
bval = self._harmonic_mean(b_est, neq)
sigma_b = bval / np.sqrt(total_neq)
aval = self._calculate_a_value(bval, total_neq, nyr, cmag, ref_mag)
sigma_a = self._calculate_a_value(bval + sigma_b, total_neq, nyr, cmag,
ref_mag)
if not 'reference_magnitude' in config:
aval = np.log10(aval)
sigma_a = np.log10(sigma_a) - aval
else:
sigma_a = sigma_a - aval
return bval, sigma_b, aval, sigma_a
def calculate(self, catalogue, config, completeness=None):
"""
Main function to calculate the a- and b-value
"""
# Input checks
cmag, ctime, ref_mag, dmag, config = input_checks(catalogue,
config,
completeness)
ival = 0
tolerance = 1E-7
number_intervals = np.shape(ctime)[0]
b_est = np.zeros(number_intervals, dtype=float)
neq = np.zeros(number_intervals, dtype=float)
nyr = np.zeros(number_intervals, dtype=float)
for ival in range(0, number_intervals):
id0 = np.abs(ctime - ctime[ival]) < tolerance
m_c = np.min(cmag[id0])
if ival == 0:
id1 = np.logical_and(
catalogue.data['year'] >= (ctime[ival] - tolerance),
catalogue.data['magnitude'] >= (m_c - tolerance))
nyr[ival] = float(catalogue.end_year) - ctime[ival] + 1.
elif ival == number_intervals - 1:
id1 = np.logical_and(
catalogue.data['year'] < (ctime[ival - 1] - tolerance),
catalogue.data['magnitude'] >= (m_c - tolerance))
nyr[ival] = ctime[ival - 1] - ctime[ival]
else:
id1 = np.logical_and(
catalogue.data['year'] >= (ctime[ival] - tolerance),
catalogue.data['year'] < (ctime[ival - 1] - tolerance))
id1 = np.logical_and(id1,
catalogue.data['magnitude'] > (m_c - tolerance))
nyr[ival] = ctime[ival - 1] - ctime[ival]
neq[ival] = np.sum(id1)
#print ival, m_c, ctime, neq, np.where(id1)[0]
# Get a- and b- value for the selected events
temp_rec_table = recurrence_table(catalogue.data['magnitude'][id1],
dmag,
catalogue.data['year'][id1])
aki_ml = AkiMaxLikelihood()
b_est[ival] = aki_ml._aki_ml(temp_rec_table[:, 0],
temp_rec_table[:, 1],
dmag, m_c)[0]
ival += 1
total_neq = np.float(np.sum(neq))
bval = self._harmonic_mean(b_est, neq)
sigma_b = bval / np.sqrt(total_neq)
aval = self._calculate_a_value(bval, total_neq, nyr, cmag, ref_mag)
sigma_a = self._calculate_a_value(bval + sigma_b, total_neq, nyr,
cmag, ref_mag)
if not config['reference_magnitude']:
aval = np.log10(aval)
sigma_a = np.log10(sigma_a) - aval
else:
sigma_a = sigma_a - aval
return bval, sigma_b, aval, sigma_a
def _b_ml(self, catalogue, config, cmag, ctime, ref_mag, dmag):
end_year = float(catalogue.end_year)
catalogue = catalogue.data
ival = 0
mag_eq_tolerance = 1E-5
aki_ml = AkiMaxLikelihood()
while ival < np.shape(ctime)[0]:
id0 = np.abs(ctime - ctime[ival]) < mag_eq_tolerance
m_c = np.min(cmag[id0])
print('--- ctime', ctime[ival], ' m_c', m_c)
# Find events later than cut-off year, and with magnitude
# greater than or equal to the corresponding completeness
# magnitude. m_c - mag_eq_tolerance is required to correct
# floating point differences.
id1 = np.logical_and(
catalogue['year'] >= ctime[ival], catalogue['magnitude'] >=
(m_c - mag_eq_tolerance))
# Get a- and b- value for the selected events
temp_rec_table = recurrence_table(catalogue['magnitude'][id1],
dmag, catalogue['year'][id1],
end_year - ctime[ival] + 1)
bval, sigma_b = aki_ml._aki_ml(temp_rec_table[:, 0],
temp_rec_table[:, 1], dmag, m_c)
if ival == 0:
gr_pars = np.array([np.hstack([bval, sigma_b])])
neq = np.sum(id1) # Number of events
else:
gr_pars = np.vstack([gr_pars, np.hstack([bval, sigma_b])])
neq = np.hstack([neq, np.sum(id1)])
ival = ival + np.sum(id0)
# Get average GR parameters
bval, sigma_b = self._average_parameters(gr_pars, neq,
config['Average Type'])
aval = self._calculate_a_value(bval, np.float(np.sum(neq)), cmag,
ctime, catalogue['magnitude'], end_year,
dmag)
sigma_a = self._calculate_a_value(bval + sigma_b,
np.float(np.sum(neq)), cmag, ctime,
catalogue['magnitude'], end_year,
dmag)
if not config['reference_magnitude']:
return bval,\
sigma_b,\
aval,\
sigma_a - aval
else:
rate = 10.**(aval - bval * config['reference_magnitude'])
sigma_rate = 10.**(sigma_a -
bval * config['reference_magnitude']) - rate
return bval,\
sigma_b,\
rate,\
sigma_rate
def _b_ml(self, catalogue, config, cmag, ctime, ref_mag, dmag, end_year):
"""
"""
ival = 0
mag_eq_tolerance = 1E-5
aki_ml = AkiMaxLikelihood()
while ival < np.shape(ctime)[0]:
id0 = np.abs(ctime - ctime[ival]) < mag_eq_tolerance
m_c = np.min(cmag[id0])
print '--- ctime',ctime[ival],' m_c',m_c
# Find events later than cut-off year, and with magnitude
# greater than or equal to the corresponding completeness magnitude.
# m_c - mag_eq_tolerance is required to correct floating point
# differences.
id1 = np.logical_and(catalogue['year'] >= ctime[ival],
catalogue['magnitude'] >= (m_c - mag_eq_tolerance))
nyr = np.float(np.max(catalogue['year'][id1])) - ctime[ival] + 1.
# Get a- and b- value for the selected events
temp_rec_table = recurrence_table(catalogue['magnitude'][id1],
dmag,
catalogue['year'][id1],
end_year-ctime[ival]+1)
bval, sigma_b = aki_ml._aki_ml(temp_rec_table[:, 0],
temp_rec_table[:, 1], dmag, m_c)
aval = np.log10(np.float(np.sum(id1)) / nyr) + bval * m_c
sigma_a = np.abs(np.log10(np.float(np.sum(id1)) / nyr) +
(bval + sigma_b) * ref_mag - aval)
# Calculate reference rate
rate = 10.0 ** (aval - bval * ref_mag)
sigrate = 10.0 ** ((aval + sigma_a) - (bval * ref_mag) -
np.log10(rate))
if ival == 0:
gr_pars = np.array([np.hstack([bval, sigma_b, rate, sigrate])])
neq = np.sum(id1) # Number of events
else:
gr_pars = np.vstack([gr_pars, np.hstack([bval, sigma_b, rate,
sigrate])])
neq = np.hstack([neq, np.sum(id1)])
ival = ival + np.sum(id0)
# Get average GR parameters
bval, sigma_b, aval, sigma_a = self._average_parameters(gr_pars, neq,
config['Average Type'])
if not 'reference_magnitude' in config:
d_aval = aval - sigma_a
aval = np.log10(aval)
sigma_a = aval - np.log10(d_aval)
return bval, sigma_b, aval, sigma_a
def calculate(self, catalogue, config, completeness=None):
"""
Main function to calculate the a- and b-value
"""
# Input checks
cmag, ctime, ref_mag, dmag, config = input_checks(
catalogue, config, completeness)
ival = 0
tolerance = 1E-7
number_intervals = np.shape(ctime)[0]
b_est = np.zeros(number_intervals, dtype=float)
neq = np.zeros(number_intervals, dtype=float)
nyr = np.zeros(number_intervals, dtype=float)
for ival in range(0, number_intervals):
id0 = np.abs(ctime - ctime[ival]) < tolerance
m_c = np.min(cmag[id0])
if ival == 0:
id1 = np.logical_and(
catalogue.data['year'] >= (ctime[ival] - tolerance),
catalogue.data['magnitude'] >= (m_c - tolerance))
nyr[ival] = float(catalogue.end_year) - ctime[ival] + 1.
elif ival == number_intervals - 1:
id1 = np.logical_and(
catalogue.data['year'] < (ctime[ival - 1] - tolerance),
catalogue.data['magnitude'] >= (m_c - tolerance))
nyr[ival] = ctime[ival - 1] - ctime[ival]
else:
id1 = np.logical_and(
catalogue.data['year'] >= (ctime[ival] - tolerance),
catalogue.data['year'] < (ctime[ival - 1] - tolerance))
id1 = np.logical_and(
id1, catalogue.data['magnitude'] > (m_c - tolerance))
nyr[ival] = ctime[ival - 1] - ctime[ival]
neq[ival] = np.sum(id1)
#print ival, m_c, ctime, neq, np.where(id1)[0]
# Get a- and b- value for the selected events
temp_rec_table = recurrence_table(catalogue.data['magnitude'][id1],
dmag,
catalogue.data['year'][id1])
aki_ml = AkiMaxLikelihood()
b_est[ival] = aki_ml._aki_ml(temp_rec_table[:, 0],
temp_rec_table[:, 1], dmag, m_c)[0]
ival += 1
total_neq = np.float(np.sum(neq))
bval = self._harmonic_mean(b_est, neq)
sigma_b = bval / np.sqrt(total_neq)
aval = self._calculate_a_value(bval, total_neq, nyr, cmag, ref_mag)
sigma_a = self._calculate_a_value(bval + sigma_b, total_neq, nyr, cmag,
ref_mag)
if not config['reference_magnitude']:
aval = np.log10(aval)
sigma_a = np.log10(sigma_a) - aval
else:
sigma_a = sigma_a - aval
return bval, sigma_b, aval, sigma_a
def test_recurrence_table_A(self):
"""
Basic recurrence table test
"""
magnitude_interval = 0.1
self.assertTrue( np.allclose(self.true_tableA,
rec_utils.recurrence_table(self.catalogueA.data['magnitude'],
magnitude_interval,
self.catalogueA.data['year'])) )
def test_recurrence_table_A(self):
"""
Basic recurrence table test
"""
magnitude_interval = 0.1
self.assertTrue(
np.allclose(
self.true_tableA,
rec_utils.recurrence_table(self.catalogueA['magnitude'],
magnitude_interval,
self.catalogueA['year'])))
def test_recurrence_table_B(self):
"""
Basic recurrence table test
"""
magnitude_interval = 0.1
self.assertTrue(
np.allclose(
self.true_tableB,
rec_utils.recurrence_table(self.catalogueB["magnitude"], magnitude_interval, self.catalogueB["year"]),
)
)
def _get_incremental_rate(self, dmag):
'''
Gets the completeness adjusted incremental seismicity rate for each
event
'''
inc = 1E-12
obs_rates = recurrence_table(self.catalogue.data['magnitude'],
dmag,
self.catalogue.data['year'])
if self.complete_adjust:
obs_time = self.end_year - self.completeness[:, 0] + 1.
obs_rates[:, 1] = obs_rates[:, 1] / (self.end_year -
self.start_year + 1)
n_comp = np.shape(self.completeness)[0]
for iloc in range(n_comp - 2, -1, -1):
comp_mag = self.completeness[iloc, 1]
comp_year = self.completeness[iloc, 0]
mag_idx = np.logical_and(
self.catalogue.data['magnitude'] >=
self.completeness[iloc, 1] - inc,
self.catalogue.data['magnitude'] <
self.completeness[iloc + 1, 1] - inc)
idx = np.logical_and(mag_idx,
self.catalogue.data['year'] >= comp_year - inc)
temp_rates = recurrence_table(
self.catalogue.data['magnitude'][idx],
dmag,
self.catalogue.data['year'][idx])
temp_rates[:, 1] = temp_rates[:, 1] / obs_time[iloc]
obs_idx = np.logical_and(
obs_rates[:, 0] >= comp_mag,
obs_rates[:, 0] < self.completeness[iloc + 1, 1])
obs_rates[obs_idx, 1] = temp_rates[:, 1]
return obs_rates[:, :2]
def calculate(self, catalogue, config, completeness=None):
'''Main function to calculate the a- and b-value'''
# Input checks
cmag, ctime, ref_mag, dmag = input_checks(catalogue, config,
completeness)
ival = 0
mag_eq_tolerance = 1E-5
number_intervals = np.shape(ctime)[0]
b_est = np.zeros(number_intervals, dtype=float)
neq = np.zeros(number_intervals, dtype=float)
nyr = np.zeros(number_intervals, dtype=float)
while ival < number_intervals:
id0 = np.abs(ctime - ctime[ival]) < mag_eq_tolerance
m_c = np.min(cmag[id0])
# Find events later than cut-off year, and with magnitude
# greater than or equal to the corresponding completeness magnitude.
# m_c - mag_eq_tolerance is required to correct floating point
# differences.
id1 = np.logical_and(catalogue['year'] >= ctime[ival],
catalogue['magnitude'] >= (m_c - mag_eq_tolerance))
nyr[ival] = np.float(np.max(catalogue['year'][id1]) -
np.min(catalogue['year'][id1]) + 1)
neq[ival] = np.sum(id1)
# Get a- and b- value for the selected events
temp_rec_table = recurrence_table(catalogue['magnitude'][id1],
dmag,
catalogue['year'][id1])
aki_ml = AkiMaxLikelihood()
b_est[ival]= aki_ml._aki_ml(temp_rec_table[:, 0],
temp_rec_table[:, 1],
dmag, m_c)[0]
ival += 1
total_neq = np.float(np.sum(neq))
bval = self._harmonic_mean(b_est, neq)
sigma_b = bval / np.sqrt(total_neq)
aval = self._calculate_a_value(bval, total_neq, nyr, cmag, ref_mag)
sigma_a = self._calculate_a_value(bval + sigma_b, total_neq, nyr,
cmag, ref_mag)
if not 'reference_magnitude' in config:
aval = np.log10(aval)
sigma_a = np.log10(sigma_a) - aval
else:
sigma_a = sigma_a - aval
return bval, sigma_b, aval, sigma_a
def _b_ml(self, catalogue, config, cmag, ctime, ref_mag, dmag):
end_year = float(catalogue.end_year)
catalogue = catalogue.data
ival = 0
mag_eq_tolerance = 1E-5
aki_ml = AkiMaxLikelihood()
while ival < np.shape(ctime)[0]:
id0 = np.abs(ctime - ctime[ival]) < mag_eq_tolerance
m_c = np.min(cmag[id0])
print '--- ctime', ctime[ival], ' m_c', m_c
# Find events later than cut-off year, and with magnitude
# greater than or equal to the corresponding completeness
# magnitude. m_c - mag_eq_tolerance is required to correct
# floating point differences.
id1 = np.logical_and(
catalogue['year'] >= ctime[ival],
catalogue['magnitude'] >= (m_c - mag_eq_tolerance))
nyr = np.float(np.max(catalogue['year'][id1])) - ctime[ival] + 1.
# Get a- and b- value for the selected events
temp_rec_table = recurrence_table(catalogue['magnitude'][id1],
dmag,
catalogue['year'][id1],
end_year-ctime[ival]+1)
bval, sigma_b = aki_ml._aki_ml(temp_rec_table[:, 0],
temp_rec_table[:, 1], dmag, m_c)
if ival == 0:
gr_pars = np.array([np.hstack([bval, sigma_b])])
neq = np.sum(id1) # Number of events
else:
gr_pars = np.vstack([gr_pars, np.hstack([bval, sigma_b])])
neq = np.hstack([neq, np.sum(id1)])
ival = ival + np.sum(id0)
# Get average GR parameters
bval, sigma_b = self._average_parameters(gr_pars, neq,
config['Average Type'])
aval = self._calculate_a_value(bval,
np.float(np.sum(neq)),
cmag,
ctime,
catalogue['magnitude'],
end_year,
dmag)
sigma_a = self._calculate_a_value(bval + sigma_b,
np.float(np.sum(neq)),
cmag,
ctime,
catalogue['magnitude'],
end_year,
dmag)
if not config['reference_magnitude']:
return bval,\
sigma_b,\
aval,\
sigma_a - aval
else:
rate = 10. ** (aval - bval * config['reference_magnitude'])
sigma_rate = 10. ** (sigma_a -
bval * config['reference_magnitude']) - rate
return bval,\
sigma_b,\
rate,\
sigma_rate