def test_compute_size_cluster(self):
from homer import homer
collection = homer.Homer(tree_filename='resources/tree.json.gz')
node = collection.tree.find('100')
node.compute_size()
self.assertIsNotNone(node.width)
self.assertIsNotNone(node.width)
def test_compute_size_leaf(self):
from homer import homer
collection = homer.Homer(tree_filename='resources/tree.json.gz')
node = collection.tree.find('peace')
node.compute_size()
self.assertIsNotNone(node.width)
self.assertIsNotNone(node.width)
self.assertGreater(node.width, node.height)
def test_draw_cluster_cluster(self):
from homer import homer
collection = homer.Homer(tree_filename='resources/tree.json.gz')
node = collection.tree.find('100')
node.compute_size()
fig = plt.figure()
ax = plt.gca()
node.draw(ax, 100, 100)
repr(node)
def test_transition(self):
from homer import homer
collection = homer.Homer(
clusters_globstring='resources/MC_gen_clusters_*.hdf',
transition_clusters_globstring='resources/MC_gen_transitions_*.hdf'
)
collection.compute_transition_list(
'../working/MC_gen_transitions_list.pickle')
def test_compute_multiple_leaves(self):
from homer import homer
collection = homer.Homer(tree_filename='resources/tree.json.gz')
collection.tree.find('peace').compute_size()
collection.tree.find('pray').compute_size()
collection.tree.find('live').compute_size()