def testTheoryProbSF(self):
assert round(0.66666,3) == round(self.prob_metric.get_metric("a.51.1", "GO:0043227"),3), "wrong probability"
assert round(0.5,3) == round(self.prob_metric.get_metric(get_not_id("GO:0043227"),"a.51.1"),3), "wrong probability"
assert round(0.0,3) == round(self.prob_metric.get_metric("a.51.1", "GO:0001530"),3), "wrong probability"
assert round(1.0,3) == round(self.prob_metric.get_metric(get_not_id("a.51.1"), "all"),3), "wrong probability"
assert round(0.25,3) == round(self.prob_metric.get_metric("all", get_not_id("a.51.1")),3), "wrong probability"
assert round(1.0,3) == round(self.prob_metric.get_metric("a.51.1","a.51.1"),3), "wrong probability"
def testTheoryProbTerm(self):
assert round(1.0,3) == round(self.prob_metric.get_metric("all", "all"),3), "wrong probability"
assert round(0.0,3) == round(self.prob_metric.get_metric("all", get_not_id("all")),3), "wrong probability"
print "all: ", self.prob_metric.get_metric("all",None)
print "all|all: ", self.prob_metric.get_metric("all","all")
print "all|notall: ", self.prob_metric.get_metric(get_not_id("all"),"all")
assert round(0.0,3) == round(self.prob_metric.get_metric(get_not_id("all"),"all"),3), "wrong probability"
assert round(0.25,3) == round(self.prob_metric.get_metric("all", "GO:0043170"),3) , "wrong probability"
assert round(0.3333,3) == round(self.prob_metric.get_metric("GO:0008324", "GO:0043170"),3), "wrong probability"
assert round(0.0,3) == round(self.prob_metric.get_metric("GO:0000133", "GO:0000135"),3), "wrong probability"
def testBGProbSF(self):
#kdrew: P( a.51.1 )
print "P(a.51.1): ", self.prob_metric.get_metric("a.51.1",None)
assert (3)/(4+TINY_NUM) == self.prob_metric.get_metric("a.51.1",None), "wrong probability"
#kdrew: P( not a.51.1 )
print "not a.51.1: ", self.prob_metric.get_metric(get_not_id("a.51.1"),None)
assert 1.0 - (3)/(4+TINY_NUM) == self.prob_metric.get_metric(get_not_id("a.51.1"),None), "wrong probability"
#kdrew: P( a.51.1 )
assert (3)/(4+TINY_NUM) == self.prob_metric.get_metric(SuperfamilyEntry(sf_id = "a.51.1"),None), "wrong probability"
#kdrew: P( not a.51.1 )
assert 1.0 - (3)/(4+TINY_NUM) == self.prob_metric.get_metric(SuperfamilyEntry(SuperfamilyEntry(sf_id = "a.51.1").get_not_id()),None), "wrong probability"
