def plot_signal_map(self, *args, **kwargs):
if self.define_signal_window is True and \
self.signal_span_selector.range is not None:
ileft = self.SI.energy2index(self.signal_span_selector.range[0])
iright = self.SI.energy2index(self.signal_span_selector.range[1])
signal_sp = self.SI.data_cube[ileft:iright,...].squeeze().copy()
if self.define_background_window is True:
pars = utils.two_area_powerlaw_estimation(
self.SI, *self.bg_span_selector.range, only_current_spectrum = False)
x = self.SI.energy_axis[ileft:iright, np.newaxis, np.newaxis]
A = pars['A'][np.newaxis,...]
r = pars['r'][np.newaxis,...]
self.bg_sp = (A*x**(-r)).squeeze()
signal_sp -= self.bg_sp
self.signal_map = signal_sp.sum(0)
if self.map_ax is None:
f = plt.figure()
self.map_ax = f.add_subplot(111)
if len(self.signal_map.squeeze().shape) == 2:
self.map = self.map_ax.imshow(self.signal_map.T,
interpolation = 'nearest')
else:
self.map, = self.map_ax.plot(self.signal_map.squeeze())
if len(self.signal_map.squeeze().shape) == 2:
self.map.set_data(self.signal_map.T)
self.map.autoscale()
else:
self.map.set_ydata(self.signal_map.squeeze())
self.map_ax.figure.canvas.draw()
def store_current_spectrum_bg_parameters(self, *args, **kwards):
if self.define_background_window is False or \
self.bg_span_selector.range is None: return
pars = utils.two_area_powerlaw_estimation(
self.SI, *self.bg_span_selector.range,only_current_spectrum = True)
self.pl.r.value = pars['r']
self.pl.A.value = pars['A']
if self.define_signal_window is True and \
self.signal_span_selector.range is not None:
self.plot_signal_map()
def energy_window_dependency(s, left, right, min_width = 10):
ins = s.energy2index(left)
ine = s.energy2index(right)
energies = s.energy_axis[ins:ine - min_width]
rs = []
As = []
for E in energies:
di = utils.two_area_powerlaw_estimation(s, E, ine)
rs.append(di['r'].mean())
As.append(di['A'].mean())
f = plt.figure()
ax1 = f.add_subplot(211)
ax1.plot(s.energy_axis[ins:ine - min_width], rs)
ax1.set_title('Rs')
ax1.set_xlabel('Energy')
ax2 = f.add_subplot(212, sharex = ax1)
ax2.plot(s.energy_axis[ins:ine - min_width], As)
ax2.set_title('As')
ax2.set_xlabel('Energy')
return rs, As
def two_area_background_estimation(self, E1=None, E2=None):
"""
Estimates the parameters of a power law background with the two
area method.
"""
ea = self.axis.axis[self.channel_switches]
if E1 is None or E1 < ea[0]:
E1 = ea[0]
else:
E1 = E1
if E2 is None:
if self.edges:
i = 0
while self.edges[i].edge_position() < E1 or \
self.edges[i].active is False:
i += 1
E2 = self.edges[i].edge_position() - \
defaults.preedge_safe_window_width
else:
E2 = ea[-1]
else:
E2 = E2
print \
"Estimating the parameters of the background by the two area method"
print "E1 = %s\t E2 = %s" % (E1, E2)
try:
estimation = utils.two_area_powerlaw_estimation(
self.spectrum, E1, E2)
bg = self._background_components[0]
bg.A.map['is_set'][:] = True
bg.r.map['is_set'][:] = True
bg.r.map['values'] = estimation['r']
bg.A.map['values'] = estimation['A']
self.charge()
except ValueError:
messages.warning(
"The power law background parameters could not be estimated\n"
"Try choosing a different energy range for the estimation")
def two_area_background_estimation(self, E1 = None, E2 = None):
"""
Estimates the parameters of a power law background with the two
area method.
"""
ea = self.axis.axis[self.channel_switches]
if E1 is None or E1 < ea[0]:
E1 = ea[0]
else:
E1 = E1
if E2 is None:
if self.edges:
i = 0
while self.edges[i].edge_position() < E1 or \
self.edges[i].active is False:
i += 1
E2 = self.edges[i].edge_position() - \
defaults.preedge_safe_window_width
else:
E2 = ea[-1]
else:
E2 = E2
print \
"Estimating the parameters of the background by the two area method"
print "E1 = %s\t E2 = %s" % (E1, E2)
try:
estimation = utils.two_area_powerlaw_estimation(self.spectrum,E1,E2)
bg = self._background_components[0]
bg.A.map['is_set'][:] = True
bg.r.map['is_set'][:] = True
bg.r.map['values'] = estimation['r']
bg.A.map['values'] = estimation['A']
self.charge()
except ValueError:
messages.warning(
"The power law background parameters could not be estimated\n"
"Try choosing a different energy range for the estimation")