def _image_process(f, project):
header = True
reader = csv.reader(f)
fields = get_data_fields(project)
images_meta = []
if header:
next(reader, None)
for row in reader:
meta = {}
# for field in fields:
# meta[field['id']] = None
image_url = row[0]
data_url = re.sub(r'image_service', "data_service", image_url)
xmlString = _get_image_meta_by_url(data_url)
meta['image_uri'] = image_url
meta['data_uri'] = data_url
match = re.search(r'.* name=\"(.*)\" owner.*', xmlString, re.I)
if match:
meta['name'] = match.group(1)
images_meta.append(meta)
return images_meta
def view(request, data_uuid):
""" """
if request.user.is_anonymous():
api_client = get_portal_api_client()
else:
api_client = request.user.agave_oauth.api_client
try:
data = Data(api_client=api_client, uuid=data_uuid)
project = data.project
except Exception as e:
exception_msg = 'Unable to load data. %s' % e
logger.error(exception_msg)
messages.warning(request, exception_msg)
return HttpResponseRedirect(reverse('ids_projects:project-list-private'))
try:
process_types = get_process_type_keys(project)
data_fields = get_data_fields(project)
data.set_fields(data_fields)
except Exception as e:
exception_msg = 'Unable to load config values. %s' % e
logger.warning(exception_msg)
context = {'process': data.process,
'project': data.project,
'specimen': data.specimen,
'data': data,
'process_types': process_types}
return render(request, 'ids_projects/data/detail.html', context)
def edit(request, data_uuid):
""""""
api_client = request.user.agave_oauth.api_client
try:
data = Data(api_client=api_client, uuid=data_uuid)
project = data.project
except Exception as e:
exception_msg = 'Unable to edit data. %s' % e
logger.exception(exception_msg)
messages.warning(request, exception_msg)
return HttpResponseRedirect('/projects/')
try:
data_fields = get_data_fields(project)
except Exception as e:
exception_msg = 'Missing project type information, cannot edit data. %s' % e
logger.error(exception_msg)
messages.warning(request, exception_msg)
return HttpResponseRedirect(
reverse('ids_projects:project-view',
kwargs={'project_uuid': project.uuid}))
#######
# GET #
#######
if request.method == 'GET':
context = {'form_data_edit': DataForm(fields=data_fields, initial=data.value),
'data': data,
'project': data.project}
return render(request, 'ids_projects/data/edit.html', context)
########
# POST #
########
elif request.method == 'POST':
form = DataForm(data_fields, request.POST)
if form.is_valid():
try:
data.value.update(form.cleaned_data)
data.save()
messages.info(request, 'Data successfully edited.')
return HttpResponseRedirect(
reverse('ids_projects:data-view',
kwargs={'data_uuid': data.uuid}))
except Exception as e:
exception_msg = 'Unable to edit data. %s' % e
logger.error(exception_msg)
messages.error(request, exception_msg)
return HttpResponseRedirect(
reverse('ids_projects:data-view',
kwargs={'data_uuid': data.uuid}))
