def test_show_files_two_items(self):
"""Multiple items should show all files matching all items"""
stdout, stderr = self.redirect_streams(
lambda: show.show_files(["rhesus/imgt", "V"]))
stdout_lines = stdout.splitlines()
self.assertEqual(stdout_lines[0], ">IGHV1-111*01")
self.assertEqual(len(stdout_lines), 914)
self.assertEqual(stderr, "")
def test_show_files_empty_list(self):
"""An empty list in should show nothing"""
with self.assertLogs(level="WARNING") as log_cm:
stdout, stderr = self.redirect_streams(lambda: show.show_files([]))
self.assertEqual(len(log_cm.output), 1)
self.assertIn("No items to show", log_cm.output[0])
self.assertEqual(stdout, "")
self.assertEqual(stderr, "")
def test_show(self):
with self.assertLogs(level="WARNING") as log_cm:
stdout, stderr = self.redirect_streams(
lambda: show.show_files([self.path / "input/missing.csv"]))
self.assertEqual(len(log_cm.output), 1)
self.assertIn("No files found", log_cm.output[0])
self.assertEqual(stdout, "")
self.assertEqual(stderr, "")
def test_show(self):
stdout, stderr = self.redirect_streams(
lambda: show.show_files([self.path / "input/file.csv"]))
try:
with open(self.path / "output/stdout.txt") as f_in:
stdout_exp = f_in.read()
except FileNotFoundError:
stdout_exp = ""
self.assertEqual(stdout, stdout_exp)
self.assertEqual(stderr, "")
def test_show_files_one_item(self):
"""One item should show all matching files"""
stdout, stderr = self.redirect_streams(
lambda: show.show_files(["primers"]))
stdout_exp = """ Species Type Seq
human gamma GCCAGGGGGAAGACCGATGGGCCCTTGGTGGA
human alpha GAGGCTCAGCGGGAAGACCTTGGGGCTGGTCGG
human mu AGGAGACGAGGGGGAAAAGGGTTGGGGCGGATG
human epsilon GCGGGTCAAGGGGAAGACGGATGGGCTCTGTGT
human delta CTGATATGATGGGGAACACATCCGGAGCCTTGG
human kappa GCGGGAAGATGAAGACAGATGGTGCAGCCACAG
human lambda GGCCTTGTTGGCTTGAAGCTCCTCAGAGGAGGG
rhesus gamma GCCAGGGGGAAGACCGATGGGCCCTTGGTGGA
rhesus alpha GAGGCTCAGCGGGAAGACCTTGGGGCTGGTCGG
rhesus mu GAGACGAGGGGGAAAAGGGTTGGGGCGGATGCA
rhesus epsilon CGGGTCAAGGGGAAGACGGATGGGCTCTGTGTG
rhesus delta CTGATATGATGGGGAACACATCCGGAGCCTTGG
rhesus kappa GCGGGAAGATGAAGACAGATGGTGCAGCCACAG
rhesus lambda GGCCTTGTTGGCTTGAAGCTCCTCAGAGGAGGG
"""
self.assertEqual(stdout, stdout_exp)
self.assertEqual(stderr, "")