def on_activation(self):
overlayWidget = OverlayWidget(self.ilastik.labelWidget, self.ilastik.project.dataMgr)
overlayWidget.setVisible(False)
self.ilastik.labelWidget.setOverlayWidget(overlayWidget)
self.ilastik.labelWidget.setLabelWidget(ve.DummyLabelWidget())
def on_activation(self):
overlayWidget = OverlayWidget(self.ilastik.labelWidget,
self.ilastik.project.dataMgr)
overlayWidget.setVisible(False)
self.ilastik.labelWidget.setOverlayWidget(overlayWidget)
self.ilastik.labelWidget.setLabelWidget(ve.DummyLabelWidget())
def on_activation(self):
ovs = self.ilastik._activeImage.module[self.__class__.moduleName].getOverlayRefs()
if len(ovs) == 0:
raw = self.ilastik._activeImage.overlayMgr["Raw Data"]
if raw is not None:
ovs.append(raw.getRef())
overlayWidget = OverlayWidget(self.ilastik.labelWidget, self.ilastik.project.dataMgr)
overlayWidget.setVisible(False)
self.ilastik.labelWidget.setOverlayWidget(overlayWidget)
self.ilastik.labelWidget.setLabelWidget(ve.DummyLabelWidget())
def on_activation(self):
ovs = self.ilastik._activeImage.module[
self.__class__.moduleName].getOverlayRefs()
if len(ovs) == 0:
raw = self.ilastik._activeImage.overlayMgr["Raw Data"]
if raw is not None:
ovs.append(raw.getRef())
overlayWidget = OverlayWidget(self.ilastik.labelWidget,
self.ilastik.project.dataMgr)
overlayWidget.setVisible(False)
self.ilastik.labelWidget.setOverlayWidget(overlayWidget)
self.ilastik.labelWidget.setLabelWidget(ve.DummyLabelWidget())
def on_activation(self):
if self.ilastik.project is None:
return
ovs = self.ilastik._activeImage.module[
self.__class__.moduleName].getOverlayRefs()
if len(ovs) == 0:
raw = self.ilastik._activeImage.overlayMgr["Raw Data"]
if raw is not None:
ovs.append(raw.getRef())
self.ilastik.labelWidget._history.volumeEditor = self.ilastik.labelWidget
overlayWidget = OverlayWidget(self.ilastik.labelWidget,
self.ilastik.project.dataMgr)
self.ilastik.labelWidget.setOverlayWidget(overlayWidget)
self.objectLabels = ObjectListWidget(
self.ilastik._activeImage.Object_Picking,
self.ilastik._activeImage.Object_Picking.objects,
self.ilastik.labelWidget)
self.ilastik.labelWidget.setLabelWidget(self.objectLabels)
#create ObjectsOverlay
ov = ObjectOverlayItem(
self.objectLabels,
self.ilastik._activeImage.Object_Picking.objects._data,
color=0,
alpha=1.0,
autoAdd=True,
autoVisible=True,
linkColorTable=True)
self.ilastik._activeImage.overlayMgr["Objects/Selection"] = ov
ov = self.ilastik._activeImage.overlayMgr["Objects/Selection"]
self.ilastik.labelWidget.setLabelWidget(self.objectLabels)
def on_activation(self):
if self.ilastik.project is None:
self.ilastik.setTabBusy(True)
return
ovs = self.ilastik._activeImage.module[
self.__class__.moduleName].getOverlayRefs()
if len(ovs) == 0:
raw = self.ilastik._activeImage.overlayMgr["Raw Data"]
if raw is not None:
ovs.append(raw.getRef())
self.ilastik.labelWidget._history.volumeEditor = self.ilastik.labelWidget
overlayWidget = OverlayWidget(self.ilastik.labelWidget,
self.ilastik.project.dataMgr)
overlayWidget.setVisible(False)
self.ilastik.labelWidget.setOverlayWidget(overlayWidget)
self.ilastik.labelWidget.setLabelWidget(ve.DummyLabelWidget())
def on_activation(self):
if self.ilastik.project is None:
return
if self.ilastik._activeImage.module[self.name] is None:
self.ilastik._activeImage.module[self.name] = PropertyMgr(
self.ilastik._activeImage)
ovs = self.ilastik._activeImage.module[self.name].getOverlayRefs()
raw = self.ilastik._activeImage.overlayMgr["Raw Data"]
self.ilastik.labelWidget._history.volumeEditor = self.ilastik.labelWidget
overlayWidget = OverlayWidget(self.ilastik.labelWidget,
self.ilastik.project.dataMgr)
self.ilastik.labelWidget.setOverlayWidget(overlayWidget)
ov = self.ilastik._activeImage.overlayMgr["Classification/Labels"]
overlayWidget.addOverlayRef(ov.getRef())
overlayWidget.addOverlayRef(raw.getRef())
self.ilastik.labelWidget.setLabelWidget(
LabelListWidget(
self.ilastik.project.dataMgr.module["Classification"].labelMgr,
self.ilastik.project.dataMgr.module["Classification"]
["labelDescriptions"], self.ilastik.labelWidget, ov))
def on_activation(self):
if self.ilastik.project is None:
return
if self.ilastik._activeImage.module[self.name] is None:
self.ilastik._activeImage.module[self.name] = PropertyMgr(self.ilastik._activeImage)
ovs = self.ilastik._activeImage.module[self.name].getOverlayRefs()
raw = self.ilastik._activeImage.overlayMgr["Raw Data"]
self.ilastik.labelWidget._history.volumeEditor = self.ilastik.labelWidget
overlayWidget = OverlayWidget(self.ilastik.labelWidget, self.ilastik.project.dataMgr)
self.ilastik.labelWidget.setOverlayWidget(overlayWidget)
ov = self.ilastik._activeImage.overlayMgr["Classification/Labels"]
overlayWidget.addOverlayRef(ov.getRef())
overlayWidget.addOverlayRef(raw.getRef())
self.ilastik.labelWidget.setLabelWidget(LabelListWidget(self.ilastik.project.dataMgr.module["Classification"].labelMgr, self.ilastik.project.dataMgr.module["Classification"]["labelDescriptions"], self.ilastik.labelWidget, ov))
def on_activation(self):
if self.ilastik.project is None: return
self._initContent()
self._initConnects()
self.interactionLog = []
self.defaultSegmentor = False
#initially add 'Raw Data' overlay
ovs = self.ilastik._activeImage.module[self.__class__.moduleName].getOverlayRefs()
if "Raw Data" in self.ilastik._activeImage.overlayMgr.keys():
raw = self.ilastik._activeImage.overlayMgr["Raw Data"]
if raw is not None: ovs.append(raw.getRef())
self.ilastik.labelWidget.interactionLog = self.interactionLog
self.ilastik.labelWidget._history.volumeEditor = self.ilastik.labelWidget
self.overlayWidget = OverlayWidget(self.ilastik.labelWidget, self.ilastik.project.dataMgr)
self.ilastik.labelWidget.setOverlayWidget(self.overlayWidget)
if self.parent.project.dataMgr.Interactive_Segmentation.segmentor is None:
segmentors = self.parent.project.dataMgr.Interactive_Segmentation.segmentorClasses
for i, seg in enumerate(segmentors):
if seg.name == "Supervoxel Segmentation":
self.parent.project.dataMgr.Interactive_Segmentation.segmentor = seg()
ui = self.parent.project.dataMgr.Interactive_Segmentation.segmentor.getInlineSettingsWidget(self.inlineSettings.childWidget, view='default')
self.inlineSettings.changeWidget(ui)
self.defaultSegmentor = True
break
#Finally, initialize the core module
s = self.ilastik._activeImage.Interactive_Segmentation
self.connect(s, QtCore.SIGNAL('overlaysChanged()'), self.on_overlaysChanged)
self.connect(s, QtCore.SIGNAL('doneOverlaysAvailable()'), self.on_doneOverlaysAvailable)
self.connect(s, QtCore.SIGNAL('weightsSetup()'), self.on_setupWeights)
self.connect(s, QtCore.SIGNAL('newSegmentation()'), self.on_newSegmentation)
self.connect(s, QtCore.SIGNAL('numColorsNeeded(int)'), self.on_numColorsNeeded)
self.connect(s, QtCore.SIGNAL('saveAsPossible(bool)'), lambda b: self.btnSaveAs.setEnabled(b))
self.connect(s, QtCore.SIGNAL('savePossible(bool)'), lambda b: self.btnSave.setEnabled(b))
self.connect(s, QtCore.SIGNAL('seedsAvailable(bool)'), lambda b: self.btnSegment.setEnabled(b))
s.init()
#add 'Seeds' overlay
self.seedOverlay = OverlayItem(s.seedLabelsVolume._data, color = 0, alpha = 1.0, colorTable = s.seedLabelsVolume.getColorTab(), autoAdd = True, autoVisible = True, linkColorTable = True)
self.ilastik._activeImage.overlayMgr["Segmentation/Seeds"] = self.seedOverlay
self.seedWidget = SeedListWidget(self.ilastik.project.dataMgr.Interactive_Segmentation.seedMgr, s.seedLabelsVolume, self.ilastik.labelWidget, self.seedOverlay)
self.ilastik.labelWidget.setLabelWidget(self.seedWidget)
self.seedOverlay.displayable3D = True
self.seedOverlay.backgroundClasses = set([0])
self.seedOverlay.smooth3D = False
def on_activation(self):
if self.ilastik.project is None:
return
ovs = self.ilastik._activeImage.module[self.__class__.moduleName].getOverlayRefs()
if len(ovs) == 0:
raw = self.ilastik._activeImage.overlayMgr["Raw Data"]
if raw is not None:
ovs.append(raw.getRef())
self.ilastik.labelWidget._history.volumeEditor = self.ilastik.labelWidget
overlayWidget = OverlayWidget(self.ilastik.labelWidget, self.ilastik.project.dataMgr)
self.ilastik.labelWidget.setOverlayWidget(overlayWidget)
self.ilastik.labelWidget.setLabelWidget(ve.DummyLabelWidget())
self.btnUnsupervisedOptions.setEnabled(True)
def on_activation(self):
if self.ilastik.project is None:
return
ovs = self.ilastik._activeImage.module[
self.__class__.moduleName].getOverlayRefs()
if len(ovs) == 0:
raw = self.ilastik._activeImage.overlayMgr["Raw Data"]
if raw is not None:
ovs.append(raw.getRef())
self.ilastik.labelWidget._history.volumeEditor = self.ilastik.labelWidget
overlayWidget = OverlayWidget(self.ilastik.labelWidget,
self.ilastik.project.dataMgr)
self.ilastik.labelWidget.setOverlayWidget(overlayWidget)
self.ilastik.labelWidget.setLabelWidget(DummyLabelWidget())
self.volumeEditorVisible = self.ilastik.volumeEditorDock.isVisible(
)
self.ilastik.volumeEditorDock.setVisible(False)
if self.consoleWidget is None:
locals = {}
locals["activeImage"] = self.ilastik._activeImage
locals["dataMgr"] = self.ilastik.project.dataMgr
self.interpreter = code.InteractiveInterpreter(locals)
self.consoleWidget = SciShell(self.interpreter)
dock = QtGui.QDockWidget("ilastik interactive console",
self.ilastik)
dock.setAllowedAreas(QtCore.Qt.BottomDockWidgetArea
| QtCore.Qt.RightDockWidgetArea
| QtCore.Qt.TopDockWidgetArea
| QtCore.Qt.LeftDockWidgetArea)
dock.setWidget(self.consoleWidget)
self.consoleDock = dock
area = QtCore.Qt.BottomDockWidgetArea
self.ilastik.addDockWidget(area, dock)
self.consoleDock.setVisible(True)
self.consoleDock.setFocus()
self.consoleWidget.multipleRedirection(True)
def on_activation(self):
if self.ilastik.project is None:
return
ovs = self.ilastik._activeImage._dataVol.backgroundOverlays
if len(ovs) == 0:
raw = self.ilastik._activeImage.overlayMgr["Raw Data"]
if raw is not None:
ovs.append(raw.getRef())
overlayWidget = OverlayWidget(self.ilastik.labelWidget, self.ilastik.project.dataMgr)
self.ilastik.labelWidget.setOverlayWidget(overlayWidget)
#create background overlay
ov = OverlayItem(self.ilastik._activeImage._dataVol.background._data, color=0, alpha=1.0, colorTable = self.ilastik._activeImage._dataVol.background.getColorTab(), autoAdd = True, autoVisible = True, linkColorTable = True)
self.ilastik._activeImage.overlayMgr["Connected Components/Background"] = ov
ov = self.ilastik._activeImage.overlayMgr["Connected Components/Background"]
self.ilastik.labelWidget.setLabelWidget(BackgroundWidget(self.ilastik.project.backgroundMgr, self.ilastik._activeImage._dataVol.background, self.ilastik.labelWidget, ov))
def on_activation(self):
if self.ilastik.project is None:
return
ovs = self.ilastik._activeImage.module[
self.__class__.moduleName].getOverlayRefs()
if len(ovs) == 0:
raw = self.ilastik._activeImage.overlayMgr["Raw Data"]
if raw is not None:
ovs.append(raw.getRef())
self.ilastik.labelWidget._history.volumeEditor = self.ilastik.labelWidget
overlayWidget = OverlayWidget(self.ilastik.labelWidget,
self.ilastik.project.dataMgr)
self.ilastik.labelWidget.setOverlayWidget(overlayWidget)
self.backgroundLabels = BackgroundWidget(
self.ilastik._activeImage.Connected_Components,
self.ilastik._activeImage.Connected_Components.background,
self.ilastik.labelWidget)
self.ilastik.labelWidget.setLabelWidget(self.backgroundLabels)
#create ObjectsOverlay
ov = BackgroundOverlayItem(
self.backgroundLabels,
self.ilastik._activeImage.Connected_Components.background._data,
color=0,
alpha=1.0,
autoAdd=True,
autoVisible=True,
linkColorTable=True)
self.ilastik._activeImage.overlayMgr[
"Connected Components/Background"] = ov
ov = self.ilastik._activeImage.overlayMgr[
"Connected Components/Background"]
self.ilastik.labelWidget.setLabelWidget(self.backgroundLabels)
