def get_documents_by_rel(request,
record,
document_id,
rel,
limit,
offset,
status,
order_by='id',
pha=None):
"""
get all documents related to argument-document by rel-type defined by rel
includes relationships to other versions of the argument-document
(also limit, offset and status)
"""
# Need to add limit, offset, order_by
document = _get_document(record=record, document_id=document_id)
if not document:
raise Http404
tdc = 0
try:
relationship = DocumentSchema.objects.get(
type=DocumentSchema.expand_rel(rel))
docs = Document.objects.filter(
record=record,
status=status,
rels_as_doc_1__document_0__original=document.
original_id, # doc is related to passed document
rels_as_doc_1__relationship=relationship
) # AND relation type is correct
tdc = len(docs)
except:
docs = []
return _render_documents(docs, record, pha, tdc)
def carenet_document_list(request, carenet, query_options):
"""List documents from a given carenet.
request.GET may contain:
* *type*: The document schema type to filter on.
Returns both documents in the given carenet and documents with the same types
as in the record's autoshare, filtered by *type* if passed.
Will return :http:statuscode:`200` with a document list on success,
:http:statuscode:`404` if *type* doesn't exist.
"""
try:
doc_type_uri = request.GET.get('type', None)
if doc_type_uri:
requested_doc_type = DocumentSchema.objects.get(type = doc_type_uri)
else:
requested_doc_type = None
except DocumentSchema.DoesNotExist:
raise Http404
documents = carenet_documents_filter(carenet, carenet.record.documents)
tdc = documents.count()
offset = query_options['offset']
limit = query_options['limit']
ret_documents = documents[offset:offset+limit]
return _render_documents(ret_documents, carenet.record, None, tdc)
def _document_label(request, record=None, document_id=None, external_id=None, pha=None, app_specific=False):
"""
set the document label
"""
label = request.raw_post_data
# Get the document
full_external_id = Document.prepare_external_id(external_id, pha, pha_specific = app_specific)
if not app_specific:
pha = None
document = _get_document(record=record, document_id=document_id, pha=pha, external_id=full_external_id)
if document:
if pha and document.pha != pha:
raise Http404
if record and document.record != record:
raise Http404
else:
raise Http404
document.label = label
document.save()
return _render_documents([document], record, pha, 1)
def carenet_document_list(request, carenet, query_options):
"""List documents from a given carenet.
request.GET may contain:
* *type*: The document schema type to filter on.
Returns both documents in the given carenet and documents with the same types
as in the record's autoshare, filtered by *type* if passed.
Will return :http:statuscode:`200` with a document list on success,
:http:statuscode:`404` if *type* doesn't exist.
"""
try:
doc_type_uri = request.GET.get('type', None)
if doc_type_uri:
requested_doc_type = DocumentSchema.objects.get(type=doc_type_uri)
else:
requested_doc_type = None
except DocumentSchema.DoesNotExist:
raise Http404
documents = carenet_documents_filter(carenet, carenet.record.documents)
tdc = documents.count()
offset = query_options['offset']
limit = query_options['limit']
ret_documents = documents[offset:offset + limit]
return _render_documents(ret_documents, carenet.record, None, tdc)
def get_documents_by_rel(request, record, document_id, rel, query_options, pha=None):
""" Get all documents related to the passed document_id by a relation of the passed relation-type.
Includes relationships to other versions of *document_id*.
Paging operators are NOT IMPLEMENTED.
**ARGUMENTS:**
* *request*: The incoming Django HttpRequest object.
* *record*: The
:py:class:`~indivo.models.records_and_documents.Record` that
the document is scoped to.
* *document_id*: The internal document identifier for the source document.
* *rel*: The relationship type to filter related documents by (as a string).
* *limit*, *offset*, *status*, *order_by*: Standard paging and filtering
arguments. See :py:func:`~indivo.lib.view_decorators.marsloader`
or :doc:`/query-api`.
.. Note::
Paging operators are not implemented for this call currently. Passing
them into the function will have no effect on output.
* *pha*: The :py:class:`~indivo.models.apps.PHA` object that the
source document is scoped to, if applicable.
**RETURNS:**
* An HttpResponse object with an XML string listing related documents
on success.
**RAISES:**
* :py:exc:`django.http.Http404` if *document_id*
doesn't identify an existing document scoped to *record*.
"""
# Need to add limit, offset, order_by
document = _get_document(record=record, document_id=document_id)
if not document:
raise Http404
tdc = 0
try:
relationship = DocumentSchema.objects.get(type=DocumentSchema.expand_rel(rel))
docs = Document.objects.filter(
record=record,
status=query_options["status"],
rels_as_doc_1__document_0__original=document.original_id, # doc is related to passed document
rels_as_doc_1__relationship=relationship,
) # AND relation type is correct
tdc = len(docs)
except:
docs = []
return _render_documents(docs, record, pha, tdc)
def document_versions(request, record, document, limit, offset, status, order_by='created_at', pha=None):
"""Retrieve the versions of a document"""
try:
docs = Document.objects.filter( original = document.original_id,
status = status).order_by(order_by)
except:
raise Http404
return _render_documents(request, docs[offset:offset+limit], record, pha, len(docs))
def get_documents_by_rel(request, record, document_id, rel, limit, offset, status, order_by='id', pha=None):
""" Get all documents related to the passed document_id by a relation of the passed relation-type.
Includes relationships to other versions of *document_id*.
Paging operators are NOT IMPLEMENTED.
**ARGUMENTS:**
* *request*: The incoming Django HttpRequest object.
* *record*: The
:py:class:`~indivo.models.records_and_documents.Record` that
the document is scoped to.
* *document_id*: The internal document identifier for the source document.
* *rel*: The relationship type to filter related documents by (as a string).
* *limit*, *offset*, *status*, *order_by*: Standard paging and filtering
arguments. See :py:func:`~indivo.lib.view_decorators.marsloader`
or :doc:`/query-api`.
.. Note::
Paging operators are not implemented for this call currently. Passing
them into the function will have no effect on output.
* *pha*: The :py:class:`~indivo.models.apps.PHA` object that the
source document is scoped to, if applicable.
**RETURNS:**
* An HttpResponse object with an XML string listing related documents
on success.
**RAISES:**
* :py:exc:`django.http.Http404` if *document_id*
doesn't identify an existing document scoped to *record*.
"""
# Need to add limit, offset, order_by
document = _get_document(record=record, document_id=document_id)
if not document:
raise Http404
tdc = 0
try:
relationship = DocumentSchema.objects.get(type=DocumentSchema.expand_rel(rel))
docs = Document.objects.filter(record=record,
status=status,
rels_as_doc_1__document_0__original=document.original_id, # doc is related to passed document
rels_as_doc_1__relationship=relationship) # AND relation type is correct
tdc = len(docs)
except:
docs = []
return _render_documents(docs, record, pha, tdc)
def document_versions(request, record, document_id, limit, offset, status, order_by='created_at'):
"""Retrieve the versions of a document"""
document = _get_document(record=record, document_id=document_id)
if not document:
raise Http404
try:
docs = Document.objects.filter( original = document.original_id,
status = status).order_by(order_by)
except:
raise Http404
return _render_documents(docs[offset:offset+limit], record, None, len(docs))
def carenet_document_list(request, carenet, limit, offset, status, order_by):
"""List documents from a given carenet
Return both documents in the given carenet and
documents with the same types as in the record's autoshare
FIXME: this needs refactoring so it's one query for the whole thing,
rather than one query per auto-share doctype
"""
try:
doc_type_uri = request.GET.get('type', None)
if doc_type_uri:
requested_doc_type = DocumentSchema.objects.get(type=doc_type_uri)
else:
requested_doc_type = None
except DocumentSchema.DoesNotExist:
raise Http404
# we want to select
# the documents that are explicitly shared
# plus the documents that are auto-shared
# minus the documents that are explicitly un-shared
record = carenet.record
# documents explicitly shared
explicitly_shared = record.documents.filter(
carenetdocument__share_p=True,
carenetdocument__carenet=carenet,
nevershare=False)
if requested_doc_type:
explicitly_shared = explicitly_shared.filter(type=requested_doc_type)
# auto-shared documents that are not in the negatively shared space
autoshared_types = DocumentSchema.objects.filter(
carenetautoshare__carenet=carenet).values('id')
implicitly_shared = record.documents.filter(
type__in=autoshared_types,
nevershare=False).exclude(carenetdocument__share_p=False,
carenetdocument__carenet=carenet)
if requested_doc_type:
implicitly_shared = implicitly_shared.filter(type=requested_doc_type)
# FIXME: we should make this lazy so that it's not evaluated right now
all_documents = [d for d in explicitly_shared
] + [d for d in implicitly_shared]
documents = all_documents[offset:offset + limit]
return _render_documents(documents, record, None, len(documents))
def get_documents_by_rel(request, record, document, rel, limit, offset, status, order_by='id', pha=None):
tdc = 0
try:
# SZ: Make more readable!
# SZ: add limit, offset, order_by support
relationship = DocumentSchema.objects.get(type=DocumentSchema.expand_rel(rel))
docs = [x for x in [[relation.document_1 \
for relation in doc.rels_as_doc_0.filter(relationship=relationship).select_related()] \
for doc in [document \
for document in Document.objects.filter(status=status,
original=document.original_id)]] \
if len(x) > 0][0]
tdc = len(docs)
except:
docs = []
return _render_documents(request, docs, record, pha, tdc)
def document_versions(request,
record,
document_id,
limit,
offset,
status,
order_by='created_at'):
""" Retrieve the versions of a document.
**ARGUMENTS:**
* *request*: The incoming Django HttpRequest object.
* *record*: The
:py:class:`~indivo.models.records_and_documents.Record` to which
the document is scoped.
* *document_id*: The internal identifier of the document.
* *limit*, *offset*, *status*, *order_by*: Standard paging and filtering
arguments. See :py:func:`~indivo.lib.view_decorators.marsloader`
or :doc:`/query-api`.
**RETURNS:**
* An HttpResponse object with an XML string containing metadata on all versions
of the document, including the passed *document_id*, on success.
**RAISES:**
* :py:exc:`django.http.Http404` if *document_id* doesn't
identify an existing document.
"""
document = _get_document(record=record, document_id=document_id)
if not document:
raise Http404
try:
docs = Document.objects.filter(original=document.original_id,
status=status).order_by(order_by)
except:
raise Http404
return _render_documents(docs[offset:offset + limit], record, None,
len(docs))
def carenet_document_list(request, docbox, limit, offset, status, order_by):
"""List documents from a given carenet
Return both documents in the given carenet and
documents with the same types as in the record's autoshare
FIXME: this needs refactoring so it's one query for the whole thing,
rather than one query per auto-share doctype
"""
try:
doc_type_uri = request.GET.get('type', None)
if doc_type_uri:
requested_doc_type = DocumentSchema.objects.get(type = doc_type_uri)
else:
requested_doc_type = None
except DocumentSchema.DoesNotExist:
raise Http404
# we want to select
# the documents that are explicitly shared
# plus the documents that are auto-shared
# minus the documents that are explicitly un-shared
carenet = docbox.carenet
record = carenet.record
# documents explicitly shared
explicitly_shared = record.documents.filter(carenetdocument__share_p = True, carenetdocument__carenet = carenet, nevershare= False)
if requested_doc_type:
explicitly_shared = explicitly_shared.filter(type = requested_doc_type)
# auto-shared documents that are not in the negatively shared space
autoshared_types = DocumentSchema.objects.filter(carenetautoshare__carenet = carenet).values('id')
implicitly_shared = record.documents.filter(type__in = autoshared_types, nevershare=False).exclude(carenetdocument__share_p = False, carenetdocument__carenet = carenet)
if requested_doc_type:
implicitly_shared = implicitly_shared.filter(type = requested_doc_type)
# FIXME: we should make this lazy so that it's not evaluated right now
all_documents = [d for d in explicitly_shared] + [d for d in implicitly_shared]
documents = all_documents[offset:offset+limit]
return _render_documents(request, documents, docbox.record, None, len(documents))
def document_versions(request,
record,
document_id,
limit,
offset,
status,
order_by='created_at'):
"""Retrieve the versions of a document"""
document = _get_document(record=record, document_id=document_id)
if not document:
raise Http404
try:
docs = Document.objects.filter(original=document.original_id,
status=status).order_by(order_by)
except:
raise Http404
return _render_documents(docs[offset:offset + limit], record, None,
len(docs))
def document_versions(request, record, document_id, query_options):
""" Retrieve the versions of a document.
**ARGUMENTS:**
* *request*: The incoming Django HttpRequest object.
* *record*: The
:py:class:`~indivo.models.records_and_documents.Record` to which
the document is scoped.
* *document_id*: The internal identifier of the document.
* *limit*, *offset*, *status*, *order_by*: Standard paging and filtering
arguments. See :py:func:`~indivo.lib.view_decorators.marsloader`
or :doc:`/query-api`.
**RETURNS:**
* An HttpResponse object with an XML string containing metadata on all versions
of the document, including the passed *document_id*, on success.
**RAISES:**
* :py:exc:`django.http.Http404` if *document_id* doesn't
identify an existing document.
"""
document = _get_document(record=record, document_id=document_id)
if not document:
raise Http404
try:
docs = Document.objects.filter( original = document.original_id,
status = query_options['status']).order_by(query_options['order_by'])
except:
raise Http404
offset = query_options['offset']
limit = query_options['limit']
return _render_documents(docs[offset:offset+limit], record, None, len(docs))
def get_documents_by_rel(request, record, document_id, rel, limit, offset, status, order_by='id', pha=None):
"""
get all documents related to argument-document by rel-type defined by rel
includes relationships to other versions of the argument-document
(also limit, offset and status)
"""
# Need to add limit, offset, order_by
document = _get_document(record=record, document_id=document_id)
if not document:
raise Http404
tdc = 0
try:
relationship = DocumentSchema.objects.get(type=DocumentSchema.expand_rel(rel))
docs = Document.objects.filter(record=record,
status=status,
rels_as_doc_1__document_0__original=document.original_id, # doc is related to passed document
rels_as_doc_1__relationship=relationship) # AND relation type is correct
tdc = len(docs)
except:
docs = []
return _render_documents(docs, record, pha, tdc)
def carenet_document_list(request, carenet, limit, offset, status, order_by):
"""List documents from a given carenet
Return both documents in the given carenet and
documents with the same types as in the record's autoshare
"""
try:
doc_type_uri = request.GET.get("type", None)
if doc_type_uri:
requested_doc_type = DocumentSchema.objects.get(type=doc_type_uri)
else:
requested_doc_type = None
except DocumentSchema.DoesNotExist:
raise Http404
documents = carenet_documents_filter(carenet, carenet.record.documents)
tdc = documents.count()
ret_documents = documents[offset : offset + limit]
return _render_documents(ret_documents, carenet.record, None, tdc)
def document_label(request, record, document=None, external_id=None, pha=None, app_specific=False):
"""
set the document label
"""
label = request.raw_post_data
# set up the full external id and potentially clear the PHA variable
# if it was just meant for selecting the external ID
full_external_id = Document.prepare_external_id(external_id, pha, pha_specific = app_specific)
if not app_specific:
pha = None
if document:
if pha and document.pha != pha:
raise Http404
if record and document.record != record:
raise Http404
else:
document = record.documents.get(external_id=full_external_id, pha=pha)
document.label = label
document.save()
return _render_documents(request, [document], record, pha, 1)
def _document_label(request, record=None, document_id=None, external_id=None, pha=None, app_specific=False):
""" Set a document's label.
**ARGUMENTS:**
* *request*: The incoming Django HttpRequest object. ``request.POST`` must
consist of a raw string containing the new label to assign.
* *record*: The
:py:class:`~indivo.models.records_and_documents.Record` that
the document is scoped to, if applicable.
* *document_id*: The internal identifier of the document to re-label.
.. Note::
One of *external_id* or *document_id* MUST be passed to this function,
or it cannot retrieve a unique document.
* *external_id*: The external identifier of the document to re-label.
.. Note::
One of *external_id* or *document_id* MUST be passed to this function,
or it cannot retrieve a unique document.
* *pha*: The :py:class:`~indivo.models.apps.PHA` object that the
document is scoped to. Also serves to scope *external_id*, if present and
*app_specific* is ``True``.
* *app_specific*: Whether or not the document is app-specific. The mere presence
of the *pha* argument isn't enough to satisfy this question, as *pha* might
have been passed in only to scope an external id for a non-app-specific
document.
**RETURNS:**
* An HttpResponse object with an XML string describing the re-labeled document
on success.
**RAISES:**
* :py:exc:`django.http.Http404` if neither *document_id* nor *external_id*
identify an existing document.
"""
label = request.raw_post_data
# Get the document
full_external_id = Document.prepare_external_id(external_id, pha, pha_specific = app_specific)
if not app_specific:
pha = None
document = _get_document(record=record, document_id=document_id, pha=pha, external_id=full_external_id)
if not document:
raise Http404
document.label = label
document.save()
return _render_documents([document], record, pha, 1)
def _document_label(request,
record=None,
document_id=None,
external_id=None,
pha=None,
app_specific=False):
""" Set a document's label.
**ARGUMENTS:**
* *request*: The incoming Django HttpRequest object. ``request.POST`` must
consist of a raw string containing the new label to assign.
* *record*: The
:py:class:`~indivo.models.records_and_documents.Record` that
the document is scoped to, if applicable.
* *document_id*: The internal identifier of the document to re-label.
.. Note::
One of *external_id* or *document_id* MUST be passed to this function,
or it cannot retrieve a unique document.
* *external_id*: The external identifier of the document to re-label.
.. Note::
One of *external_id* or *document_id* MUST be passed to this function,
or it cannot retrieve a unique document.
* *pha*: The :py:class:`~indivo.models.apps.PHA` object that the
document is scoped to. Also serves to scope *external_id*, if present and
*app_specific* is ``True``.
* *app_specific*: Whether or not the document is app-specific. The mere presence
of the *pha* argument isn't enough to satisfy this question, as *pha* might
have been passed in only to scope an external id for a non-app-specific
document.
**RETURNS:**
* An HttpResponse object with an XML string describing the re-labeled document
on success.
**RAISES:**
* :py:exc:`django.http.Http404` if neither *document_id* nor *external_id*
identify an existing document.
"""
label = request.raw_post_data
# Get the document
full_external_id = Document.prepare_external_id(external_id,
pha,
pha_specific=app_specific)
if not app_specific:
pha = None
document = _get_document(record=record,
document_id=document_id,
pha=pha,
external_id=full_external_id)
if not document:
raise Http404
document.label = label
document.save()
return _render_documents([document], record, pha, 1)