Esempi in Python per isInRange

Esempio n. 1

File: genReads.py Progetto: meridith-e/neat-genreads

	else:
		potential_vals = range(FRAGMENT_SIZE-6*FRAGMENT_STD,FRAGMENT_SIZE+6*FRAGMENT_STD+1)
		FRAGLEN_VALS   = []
		for i in xrange(len(potential_vals)):
			if potential_vals[i] > READLEN:
				FRAGLEN_VALS.append(potential_vals[i])
		FRAGLEN_PROB = [np.exp(-(((n-float(FRAGMENT_SIZE))**2)/(2*(FRAGMENT_STD**2)))) for n in FRAGLEN_VALS]
		FRAGLEN_DISTRIBUTION = DiscreteDistribution(FRAGLEN_PROB,FRAGLEN_VALS)


"""************************************************
****          MORE INPUT ERROR CHECKING
************************************************"""


isInRange(READLEN,           10,1000000, 'Error: -R must be between 10 and 1,000,000')
isInRange(COVERAGE,          0,1000000,  'Error: -c must be between 0 and 1,000,000')
isInRange(PLOIDS,            1,100,      'Error: -p must be between 1 and 100')
isInRange(OFFTARGET_SCALAR,  0,1,        'Error: -to must be between 0 and 1')
if MUT_RATE != -1 and MUT_RATE != None:
	isInRange(MUT_RATE,      0,0.3,      'Error: -M must be between 0 and 0.3')
if SE_RATE != -1 and SE_RATE != None:
	isInRange(SE_RATE,       0,0.3,      'Error: -E must be between 0 and 0.3')
if NJOBS != 1:
	isInRange(NJOBS,         1,1000,     'Error: --job must be between 1 and 1,000')
	isInRange(MYJOB,         1,1000,     'Error: --job must be between 1 and 1,000')
	isInRange(MYJOB,         1,NJOBS,    'Error: job id must be less than or equal to number of jobs')
if N_MAX_QUAL != -1:
	isInRange(N_MAX_QUAL,    1,40,       'Error: -N must be between 1 and 40')

Esempio n. 2

File: genReads.py Progetto: zstephens/neat-genreads

	else:
		potential_vals = range(FRAGMENT_SIZE-6*FRAGMENT_STD,FRAGMENT_SIZE+6*FRAGMENT_STD+1)
		FRAGLEN_VALS   = []
		for i in xrange(len(potential_vals)):
			if potential_vals[i] > READLEN:
				FRAGLEN_VALS.append(potential_vals[i])
		FRAGLEN_PROB = [np.exp(-(((n-float(FRAGMENT_SIZE))**2)/(2*(FRAGMENT_STD**2)))) for n in FRAGLEN_VALS]
		FRAGLEN_DISTRIBUTION = DiscreteDistribution(FRAGLEN_PROB,FRAGLEN_VALS)


"""************************************************
****          MORE INPUT ERROR CHECKING
************************************************"""


isInRange(READLEN,           10,1000000, 'Error: -R must be between 10 and 1,000,000')
isInRange(COVERAGE,          0,1000000,  'Error: -c must be between 0 and 1,000,000')
isInRange(PLOIDS,            1,100,      'Error: -p must be between 1 and 100')
isInRange(OFFTARGET_SCALAR,  0,1,        'Error: -to must be between 0 and 1')
if MUT_RATE != -1 and MUT_RATE != None:
	isInRange(MUT_RATE,      0,0.3,      'Error: -M must be between 0 and 0.3')
if SE_RATE != -1 and SE_RATE != None:
	isInRange(SE_RATE,       0,0.3,      'Error: -E must be between 0 and 0.3')
if NJOBS != 1:
	isInRange(NJOBS,         1,1000,     'Error: --job must be between 1 and 1,000')
	isInRange(MYJOB,         1,1000,     'Error: --job must be between 1 and 1,000')
	isInRange(MYJOB,         1,NJOBS,    'Error: job id must be less than or equal to number of jobs')
if N_MAX_QUAL != -1:
	isInRange(N_MAX_QUAL,    1,40,       'Error: -N must be between 1 and 40')