def testInteg():
from peakBBA import peakFitBBA
from monDimReduce import SAXSDimReduce
from input_file_parsing import parse_config
calibList = getAllCalibPath()
dataPath = expUsr('~/allSampleTest/')
configPath = expUsr('~/monHiTp/config')
fileList = glob.glob(os.path.join(dataPath, '*.tif'))
fileGen = (x for x in fileList)
config = parse_config(configPath)
if config:
QRange = (config['Qmin'], config['Qmax'])
ChiRange = (config['ChiMin'], config['ChiMax'])
# require all bounds to exist, currently can't check default limits
if (any(isinstance(n, str) for n in QRange)
or any(isinstance(m, str) for m in ChiRange)):
print('Pass found, ignoring Q,Chi limits')
QRange, ChiRange = None, None
peakShape = config['peakShape']
peakNo = config['peakNo']
fit_order = config['fit_order']
hiLimit = config['highlightLimit']
config['bkgdPath'] = expUsr('~/monHiTp/')
else:
#Qrange, peakShape, peakNo, fit_order, hiLimit = None, None, None, None, None
print('no config file')
start = time.time()
for f in fileGen:
if any(x in f for x in ['k1', 'k2', 'k3', 'a1', 'k5']):
c = calibList[0]
elif any(x in f for x in ['k6', 'k7']):
c = calibList[5]
elif any(x in f for x in ['k8a']):
c = calibList[1]
elif any(x in f for x in ['k9a']):
c = calibList[2]
elif any(x in f for x in ['r5', 'r15']):
c = calibList[4]
else:
c = calibList[3]
print(f + '\n<===>\n' + c)
SAXSDimReduce(c, f, config)
peakFitBBA(f, config)
end = time.time()
print(end - start)
print(len(fileList))
def mainWrapper():
# grab monitor folder
root = Tkinter.Tk()
root.withdraw()
calibPath = tkFileDialog.askopenfilename(title='Select Calibration File')
#calibPath = os.path.expanduser('~/monHiTp/testHold/8Nov17_calib_1.calib')
if calibPath is '':
print('No calibration path selected, aborting...')
return
#configPath = tkFileDialog.askopenfilename(title='Select Config File')
configPath = os.path.expanduser('~/monHiTp/config')
if configPath is '':
print('No config file supplied, aborting...')
return
config = parse_config(configPath)
monFoldPath = tkFileDialog.askdirectory(title='Select folder to watch')
#monFoldPath = os.path.expanduser('~/monHiTp/testMon')
if monFoldPath is '':
print('No monitor folder selected, aborting...')
return
print('monitoring: ' + monFoldPath + '===================================')
print('==================================================================')
# Initialize monitor
watchManager = pyinotify.WatchManager()
#eventNotifier = pyinotify.Notifier(watchManager) # Enable to monitor all
eventNotifier = pyinotify.Notifier(
watchManager, EventProcessor(calibPath=calibPath, config=config))
# Enable to use custom event processor
watchManager.add_watch(monFoldPath, pyinotify.ALL_EVENTS)
# Begin loop and handle events
eventNotifier.loop()
print('No bkgd file supplied, aborting...')
sys.exit()
print('Calibration File: ' + calibPath)
print('Config File: ' + configPath)
print('BkgdImg File: ' + configPath)
print('Folder to process: ' + dataPath)
print('')
##########################################Extension chooser?...
fileList = glob.glob(os.path.join(dataPath, '*.tif'))
if len(fileList) == 0:
sys.exit('No files found')
# Sort out config file
config = parse_config(configPath)
if config:
QRange = (config['Qmin'], config['Qmax'])
ChiRange = (config['ChiMin'], config['ChiMax'])
# require all bounds to exist, currently can't check default limits
if (any(isinstance(n, str) for n in QRange)
or any(isinstance(m, str) for m in ChiRange)):
print('Pass found, ignoring Q,Chi limits')
QRange, ChiRange = None, None
peakShape = config['peakShape']
peakNo = config['peakNo']
fit_order = config['fit_order']
hiLimit = config['highlightLimit']
skipExisting = config['skipExisting']
else:
#Qrange, peakShape, peakNo, fit_order, hiLimit = None, None, None, None, None