def test_import_job_for_one_invalid_record(self):
stdout_stub = TestStream()
stderr_stub = TestStream()
invalid_json_file = open('./integration_tests/fixtures/one_invalid_mapping.json', 'rb')
importer = MappingsImporter(self.source1, invalid_json_file, stdout_stub, stderr_stub, 'test')
importer.import_mappings(total=1)
self.assertTrue('Cannot map concept to itself.' in stderr_stub.getvalue())
def test_update_concept_with_invalid_record(self):
(concept, _) = create_concept(mnemonic='1',
user=self.user1,
source=self.source1,
names=[self.name])
self.testfile = open(
'./integration_tests/fixtures/concept_without_fully_specified_name.json',
'rb')
stderr_stub = TestStream()
source = create_source(
self.user1, validation_schema=CUSTOM_VALIDATION_SCHEMA_OPENMRS)
importer = ConceptsImporter(source,
self.testfile,
'test',
TestStream(),
stderr_stub,
save_validation_errors=False)
importer.import_concepts(total=1)
self.assertTrue(OPENMRS_AT_LEAST_ONE_FULLY_SPECIFIED_NAME in
stderr_stub.getvalue())
self.assertEquals(
1,
Concept.objects.exclude(
concept_class__in=LOOKUP_CONCEPT_CLASSES).count())
self.assertEquals(
1,
ConceptVersion.objects.exclude(
concept_class__in=LOOKUP_CONCEPT_CLASSES).count())
def test_import_single_concept_without_fully_specified_name(self):
self.testfile = open('./integration_tests/fixtures/concept_without_fully_specified_name.json', 'rb')
stderr_stub = TestStream()
source = create_source(self.user1, validation_schema=CUSTOM_VALIDATION_SCHEMA_OPENMRS)
importer = ConceptsImporter(source, self.testfile, 'test', TestStream(), stderr_stub, save_validation_errors=False)
importer.import_concepts(total=1)
self.assertTrue(OPENMRS_AT_LEAST_ONE_FULLY_SPECIFIED_NAME in stderr_stub.getvalue())
def test_import_job_for_change_in_data(self):
stdout_stub = TestStream()
create_concept(mnemonic='1', user=self.user1, source=self.source1)
importer = ConceptsImporter(self.source1,
self.testfile,
'test',
stdout_stub,
TestStream(),
save_validation_errors=False)
importer.import_concepts(total=1)
all_concept_versions = ConceptVersion.objects.exclude(
concept_class__in=LOOKUP_CONCEPT_CLASSES)
self.assertEquals(len(all_concept_versions), 2)
latest_concept_version = [
version for version in all_concept_versions
if version.previous_version
][0]
self.assertEquals(len(latest_concept_version.names), 4)
self.assertTrue(('Updated concept, replacing version ID ' +
latest_concept_version.previous_version.id
) in stdout_stub.getvalue())
self.assertTrue('**** Processed 1 out of 1 concepts - 1 updated, ****'
in stdout_stub.getvalue())
def test_import_job_for_change_in_data(self):
stdout_stub = TestStream()
stderr_stub = TestStream()
mapping = Mapping(
parent=self.source1,
map_type="SAME-AS",
from_concept=self.concept3,
to_source=self.source1,
to_concept_code="413532003",
external_id="junk",
)
kwargs = {"parent_resource": self.source1}
Mapping.persist_new(mapping, self.user1, **kwargs)
source_version = SourceVersion.get_latest_version_of(self.source1)
source_version.mappings = [mapping.id]
source_version.save()
importer = MappingsImporter(self.source1, self.testfile, stdout_stub, stderr_stub, "test")
importer.import_mappings(total=1)
self.assertTrue("**** Processed 1 out of 1 mappings - 1 updated, ****" in stdout_stub.getvalue())
self.assertTrue(("Updated mapping with ID " + mapping.id) in stdout_stub.getvalue())
updated_mapping = Mapping.objects.get(to_concept_code="413532003")
self.assertTrue(updated_mapping.retired)
self.assertEquals(updated_mapping.external_id, "70279ABBBBBBBBBBBBBBBBBBBBBBBBBBBBBB")
def test_import_job_for_change_in_data(self):
stdout_stub = TestStream()
stderr_stub = TestStream()
mapping = Mapping(parent=self.source1,
map_type='SAME-AS',
from_concept=self.concept3,
to_source=self.source1,
to_concept_code='413532003',
external_id='junk')
kwargs = {
'parent_resource': self.source1,
}
Mapping.persist_new(mapping, self.user1, **kwargs)
source_version = SourceVersion.get_latest_version_of(self.source1)
source_version.mappings = [mapping.id]
source_version.save()
importer = MappingsImporter(self.source1, self.testfile, stdout_stub,
stderr_stub, 'test')
importer.import_mappings(total=1)
self.assertTrue('**** Processed 1 out of 1 mappings - 1 updated, ****'
in stdout_stub.getvalue())
self.assertTrue(('Updated mapping with ID ' +
mapping.id) in stdout_stub.getvalue())
updated_mapping = Mapping.objects.get(to_concept_code='413532003')
self.assertTrue(updated_mapping.retired)
self.assertEquals(updated_mapping.external_id,
'70279ABBBBBBBBBBBBBBBBBBBBBBBBBBBBBB')
def test_import_concepts_with_invalid_records(self):
self.testfile = open(
'./integration_tests/fixtures/valid_invalid_concepts.json', 'rb')
stderr_stub = TestStream()
source = create_source(
self.user1, validation_schema=CUSTOM_VALIDATION_SCHEMA_OPENMRS)
importer = ConceptsImporter(source,
self.testfile,
'test',
TestStream(),
stderr_stub,
save_validation_errors=False)
importer.import_concepts(total=7)
self.assertTrue(OPENMRS_AT_LEAST_ONE_FULLY_SPECIFIED_NAME in
stderr_stub.getvalue())
self.assertTrue(OPENMRS_FULLY_SPECIFIED_NAME_UNIQUE_PER_SOURCE_LOCALE
in stderr_stub.getvalue())
self.assertEquals(
5,
Concept.objects.exclude(
concept_class__in=LOOKUP_CONCEPT_CLASSES).count())
self.assertEquals(
5,
ConceptVersion.objects.exclude(
concept_class__in=LOOKUP_CONCEPT_CLASSES).count())
def test_import_job_for_change_in_data(self):
stdout_stub = TestStream()
concept = Concept(mnemonic='1',
created_by=self.user1,
updated_by=self.user1,
parent=self.source1,
concept_class='Diagnosis',
external_id='1AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA',
names=[self.name])
kwargs = {
'parent_resource': self.source1,
}
Concept.persist_new(concept, self.user1, **kwargs)
importer = ConceptsImporter(self.source1, self.testfile, 'test',
stdout_stub, TestStream())
importer.import_concepts(total=1)
all_concept_versions = ConceptVersion.objects.all()
self.assertEquals(len(all_concept_versions), 2)
latest_concept_version = [
version for version in all_concept_versions
if version.previous_version
][0]
self.assertEquals(len(latest_concept_version.names), 4)
self.assertTrue(('Updated concept, replacing version ID ' +
latest_concept_version.previous_version.id
) in stdout_stub.getvalue())
self.assertTrue(
'concepts of 1 1 - 1 updated' in stdout_stub.getvalue())
def test_import_job_for_change_in_data(self):
stdout_stub = TestStream()
concept = Concept(
mnemonic='1',
created_by=self.user1,
updated_by=self.user1,
parent=self.source1,
concept_class='Diagnosis',
external_id='1AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA',
names=[self.name])
kwargs = {
'parent_resource': self.source1,
}
Concept.persist_new(concept, self.user1, **kwargs)
importer = ConceptsImporter(self.source1, self.testfile, 'test', stdout_stub, TestStream())
importer.import_concepts(total=1)
all_concept_versions = ConceptVersion.objects.all()
self.assertEquals(len(all_concept_versions), 2)
latest_concept_version = [version for version in all_concept_versions if version.previous_version][0]
self.assertEquals(len(latest_concept_version.names), 4)
self.assertTrue((
'Updated concept, replacing version ID ' + latest_concept_version.previous_version.id) in stdout_stub.getvalue())
self.assertTrue('concepts of 1 1 - 1 updated' in stdout_stub.getvalue())
def test_import_job_for_change_in_data(self):
stdout_stub = TestStream()
stderr_stub = TestStream()
mapping = Mapping(
parent=self.source1,
map_type='SAME-AS',
from_concept=self.concept3,
to_source=self.source1,
to_concept_code='413532003',
external_id='junk'
)
kwargs = {
'parent_resource': self.source1,
}
Mapping.persist_new(mapping, self.user1, **kwargs)
source_version = SourceVersion.get_latest_version_of(self.source1)
source_version.mappings = [mapping.id]
source_version.save()
importer = MappingsImporter(self.source1, self.testfile, stdout_stub, stderr_stub, 'test')
importer.import_mappings(total=1)
self.assertTrue('mappings of 1 1 - 1 updated' in stdout_stub.getvalue())
self.assertTrue(('Updated mapping with ID ' + mapping.id) in stdout_stub.getvalue())
updated_mapping = Mapping.objects.get(to_concept_code='413532003')
self.assertTrue(updated_mapping.retired)
self.assertEquals(updated_mapping.external_id, '70279ABBBBBBBBBBBBBBBBBBBBBBBBBBBBBB')
def test_import_concepts_with_invalid_records(self):
self.testfile = open('./integration_tests/fixtures/valid_invalid_concepts.json', 'rb')
stderr_stub = TestStream()
importer = ConceptsImporter(self.source1, self.testfile, 'test', TestStream(), stderr_stub)
importer.import_concepts(total=7)
self.assertTrue('Concept requires at least one fully specified name' in stderr_stub.getvalue())
self.assertTrue('Concept preferred name must be unique for same source and locale' in stderr_stub.getvalue())
self.assertEquals(5, Concept.objects.count())
self.assertEquals(5, ConceptVersion.objects.count())
def test_import_single_concept_without_fully_specified_name(self):
self.testfile = open(
'./integration_tests/fixtures/concept_without_fully_specified_name.json',
'rb')
stderr_stub = TestStream()
importer = ConceptsImporter(self.source1, self.testfile, 'test',
TestStream(), stderr_stub)
importer.import_concepts(total=1)
self.assertTrue(
BASIC_AT_LEAST_ONE_FULLY_SPECIFIED_NAME in stderr_stub.getvalue())
def test_import_concepts_with_invalid_records(self):
self.testfile = open('./integration_tests/fixtures/valid_invalid_concepts.json', 'rb')
stderr_stub = TestStream()
source = create_source(self.user1, validation_schema=CUSTOM_VALIDATION_SCHEMA_OPENMRS)
importer = ConceptsImporter(source, self.testfile, 'test', TestStream(), stderr_stub, save_validation_errors=False)
importer.import_concepts(total=7)
self.assertTrue(OPENMRS_AT_LEAST_ONE_FULLY_SPECIFIED_NAME in stderr_stub.getvalue())
self.assertTrue(OPENMRS_FULLY_SPECIFIED_NAME_UNIQUE_PER_SOURCE_LOCALE in stderr_stub.getvalue())
self.assertEquals(5, Concept.objects.exclude(concept_class__in=LOOKUP_CONCEPT_CLASSES).count())
self.assertEquals(5, ConceptVersion.objects.exclude(concept_class__in=LOOKUP_CONCEPT_CLASSES).count())
def test_import_single_concept_without_fully_specified_name(self):
self.testfile = open(
'./integration_tests/fixtures/concept_without_fully_specified_name.json',
'rb')
stderr_stub = TestStream()
importer = ConceptsImporter(self.source1, self.testfile, 'test',
TestStream(), stderr_stub)
importer.import_concepts(total=1)
self.assertTrue('Concept requires at least one fully specified name' in
stderr_stub.getvalue())
def test_import_valid_invalid_mappings(self):
stdout_stub = TestStream()
stderr_stub = TestStream()
invalid_json_file = open('./integration_tests/fixtures/valid_invalid_mapping.json', 'rb')
importer = MappingsImporter(self.source1, invalid_json_file, stdout_stub, stderr_stub, 'test')
importer.import_mappings(total=5)
self.assertTrue('Cannot map concept to itself.' in stderr_stub.getvalue())
self.assertTrue("Must specify either 'to_concept' or 'to_source' & " in stderr_stub.getvalue())
self.assertEquals(3, Mapping.objects.count())
self.assertEquals(3, MappingVersion.objects.count())
def test_import_job_for_one_invalid_record(self):
stdout_stub = TestStream()
stderr_stub = TestStream()
invalid_json_file = open(
'./integration_tests/fixtures/one_invalid_mapping.json', 'rb')
importer = MappingsImporter(self.source1, invalid_json_file,
stdout_stub, stderr_stub, 'test')
importer.import_mappings(total=1)
self.assertTrue(
'Cannot map concept to itself.' in stderr_stub.getvalue())
def test_update_concept_with_invalid_record(self):
(concept, _) = create_concept(mnemonic='1', user=self.user1, source=self.source1, names=[self.name])
self.testfile = open('./integration_tests/fixtures/concept_without_fully_specified_name.json', 'rb')
stderr_stub = TestStream()
source = create_source(self.user1, validation_schema=CUSTOM_VALIDATION_SCHEMA_OPENMRS)
importer = ConceptsImporter(source, self.testfile, 'test', TestStream(), stderr_stub, save_validation_errors=False)
importer.import_concepts(total=1)
self.assertTrue(OPENMRS_AT_LEAST_ONE_FULLY_SPECIFIED_NAME in stderr_stub.getvalue())
self.assertEquals(1, Concept.objects.exclude(concept_class__in=LOOKUP_CONCEPT_CLASSES).count())
self.assertEquals(1, ConceptVersion.objects.exclude(concept_class__in=LOOKUP_CONCEPT_CLASSES).count())
def test_import_job_for_one_record(self):
stdout_stub = TestStream()
importer = ConceptsImporter(self.source1, self.testfile, 'test', stdout_stub, TestStream())
importer.import_concepts(total=1)
self.assertTrue('Created new concept: 1 = Diagnosis' in stdout_stub.getvalue())
self.assertTrue('Finished importing concepts!' in stdout_stub.getvalue())
inserted_concept = Concept.objects.get(mnemonic='1')
self.assertEquals(inserted_concept.parent, self.source1)
inserted_concept_version = ConceptVersion.objects.get(versioned_object_id=inserted_concept.id)
source_version_latest = SourceVersion.get_latest_version_of(self.source1)
self.assertEquals(source_version_latest.concepts, [inserted_concept_version.id])
def test_import_job_for_one_record(self):
stdout_stub = TestStream()
stderr_stub = TestStream()
importer = MappingsImporter(self.source1, self.testfile, stdout_stub, stderr_stub, 'test')
importer.import_mappings(total=1)
self.assertTrue('Created new mapping:' in stdout_stub.getvalue())
self.assertTrue('/users/user1/sources/source1/:413532003' in stdout_stub.getvalue())
inserted_mapping = Mapping.objects.get(to_concept_code='413532003')
self.assertEquals(inserted_mapping.to_source, self.source1)
self.assertEquals(inserted_mapping.from_source, self.source2)
mapping_ids = SourceVersion.get_latest_version_of(self.source1).mappings
mapping_version = MappingVersion.objects.get(versioned_object_id=inserted_mapping.id, is_latest_version=True)
self.assertEquals(mapping_ids[0], mapping_version.id)
def test_import_valid_invalid_mappings(self):
stdout_stub = TestStream()
stderr_stub = TestStream()
invalid_json_file = open(
'./integration_tests/fixtures/valid_invalid_mapping.json', 'rb')
importer = MappingsImporter(self.source1, invalid_json_file,
stdout_stub, stderr_stub, 'test')
importer.import_mappings(total=5)
self.assertTrue(
'Cannot map concept to itself.' in stderr_stub.getvalue())
self.assertTrue("Must specify either 'to_concept' or 'to_source' & " in
stderr_stub.getvalue())
self.assertEquals(3, Mapping.objects.count())
self.assertEquals(3, MappingVersion.objects.count())
def test_import_concepts_with_invalid_records(self):
self.testfile = open(
'./integration_tests/fixtures/valid_invalid_concepts.json', 'rb')
stderr_stub = TestStream()
importer = ConceptsImporter(self.source1, self.testfile, 'test',
TestStream(), stderr_stub)
importer.import_concepts(total=7)
self.assertTrue('Concept requires at least one fully specified name' in
stderr_stub.getvalue())
self.assertTrue(
'Concept preferred name should be unique for same source and locale'
in stderr_stub.getvalue())
self.assertEquals(5, Concept.objects.count())
self.assertEquals(5, ConceptVersion.objects.count())
def test_import_concepts_into_openmrs_validated_source_with_valid_records(
self):
test_file = open(
'./integration_tests/fixtures/concepts_for_openmrs_validation.json',
'rb')
stderr_stub = TestStream()
user = create_user()
source = create_source(
user, validation_schema=CUSTOM_VALIDATION_SCHEMA_OPENMRS)
importer = ConceptsImporter(source, test_file, 'test', TestStream(),
stderr_stub)
importer.import_concepts(total=5)
self.assertTrue(
"Custom validation rules require a concept to have exactly one preferred name"
in stderr_stub.getvalue())
self.assertTrue(
"Custom validation rules require a preferred name to be different than a short name"
in stderr_stub.getvalue())
self.assertTrue(
"Custom validation rules require a preferred name not to be an index/search term"
in stderr_stub.getvalue())
self.assertTrue(
"Custom validation rules require all names except type=SHORT to be unique"
in stderr_stub.getvalue())
self.assertTrue(
"Custom validation rules require at least one description" in
stderr_stub.getvalue())
self.assertEquals(1, Concept.objects.count())
self.assertEquals(1, ConceptVersion.objects.count())
def test_import_job_for_change_in_data(self):
stdout_stub = TestStream()
create_concept(mnemonic='1', user=self.user1, source=self.source1)
importer = ConceptsImporter(self.source1, self.testfile, 'test', stdout_stub, TestStream(), save_validation_errors=False)
importer.import_concepts(total=1)
all_concept_versions = ConceptVersion.objects.exclude(concept_class__in=LOOKUP_CONCEPT_CLASSES)
self.assertEquals(len(all_concept_versions), 2)
latest_concept_version = [version for version in all_concept_versions if version.previous_version][0]
self.assertEquals(len(latest_concept_version.names), 4)
self.assertTrue(('Updated concept, replacing version ID ' + latest_concept_version.previous_version.id) in stdout_stub.getvalue())
self.assertTrue('**** Processed 1 out of 1 concepts - 1 updated, ****' in stdout_stub.getvalue())
def test_import_concepts_into_openmrs_validated_source_with_valid_records(self):
test_file = open("./integration_tests/fixtures/concepts_for_openmrs_validation.json", "rb")
stderr_stub = TestStream()
user = create_user()
source = create_source(user, validation_schema=CUSTOM_VALIDATION_SCHEMA_OPENMRS)
importer = ConceptsImporter(source, test_file, "test", TestStream(), stderr_stub, save_validation_errors=False)
importer.import_concepts(total=5)
self.assertTrue(OPENMRS_MUST_HAVE_EXACTLY_ONE_PREFERRED_NAME in stderr_stub.getvalue())
self.assertTrue(OPENMRS_SHORT_NAME_CANNOT_BE_PREFERRED in stderr_stub.getvalue())
self.assertTrue(OPENMRS_SHORT_NAME_CANNOT_BE_PREFERRED in stderr_stub.getvalue())
self.assertTrue(OPENMRS_NAMES_EXCEPT_SHORT_MUST_BE_UNIQUE in stderr_stub.getvalue())
self.assertEquals(2, Concept.objects.exclude(concept_class__in=LOOKUP_CONCEPT_CLASSES).count())
self.assertEquals(2, ConceptVersion.objects.exclude(concept_class__in=LOOKUP_CONCEPT_CLASSES).count())
def test_update_mapping_with_invalid_record(self):
mapping = Mapping(parent=self.source1, map_type="SAME-AS", from_concept=self.concept3, to_concept=self.concept1)
kwargs = {"parent_resource": self.source1}
Mapping.persist_new(mapping, self.user1, **kwargs)
source_version = SourceVersion.get_latest_version_of(self.source1)
source_version.mappings = [mapping.id]
source_version.save()
stderr_stub = TestStream()
invalid_json_file = open("./integration_tests/fixtures/one_internal_invalid_mapping.json", "rb")
importer = MappingsImporter(self.source1, invalid_json_file, TestStream(), stderr_stub, "test")
importer.import_mappings(total=1)
self.assertTrue(
"Must specify either 'to_concept' or 'to_source' & 'to_concept_code'. Cannot specify both."
in stderr_stub.getvalue()
)
def test_import_single_concept_without_fully_specified_name(self):
self.testfile = open(
'./integration_tests/fixtures/concept_without_fully_specified_name.json',
'rb')
stderr_stub = TestStream()
source = create_source(
self.user1, validation_schema=CUSTOM_VALIDATION_SCHEMA_OPENMRS)
importer = ConceptsImporter(source,
self.testfile,
'test',
TestStream(),
stderr_stub,
save_validation_errors=False)
importer.import_concepts(total=1)
self.assertTrue(OPENMRS_AT_LEAST_ONE_FULLY_SPECIFIED_NAME in
stderr_stub.getvalue())
def test_import_job_for_one_record(self):
stdout_stub = TestStream()
stderr_stub = TestStream()
importer = MappingsImporter(self.source1, self.testfile, stdout_stub,
stderr_stub, 'test')
importer.import_mappings(total=1)
self.assertTrue('Created new mapping:' in stdout_stub.getvalue())
self.assertTrue('/users/user1/sources/source1/:413532003' in
stdout_stub.getvalue())
inserted_mapping = Mapping.objects.get(to_concept_code='413532003')
self.assertEquals(inserted_mapping.to_source, self.source1)
self.assertEquals(inserted_mapping.from_source, self.source2)
mapping_ids = SourceVersion.get_latest_version_of(
self.source1).get_mapping_ids()
mapping_version = MappingVersion.objects.get(
versioned_object_id=inserted_mapping.id, is_latest_version=True)
self.assertEquals(mapping_ids[0], mapping_version.id)
def test_import_concepts_into_openmrs_validated_source_with_valid_records(
self):
test_file = open(
'./integration_tests/fixtures/concepts_for_openmrs_validation.json',
'rb')
stderr_stub = TestStream()
user = create_user()
source = create_source(
user, validation_schema=CUSTOM_VALIDATION_SCHEMA_OPENMRS)
importer = ConceptsImporter(source,
test_file,
'test',
TestStream(),
stderr_stub,
save_validation_errors=False)
importer.import_concepts(total=5)
self.assertTrue(OPENMRS_MUST_HAVE_EXACTLY_ONE_PREFERRED_NAME in
stderr_stub.getvalue())
self.assertTrue(
OPENMRS_SHORT_NAME_CANNOT_BE_PREFERRED in stderr_stub.getvalue())
self.assertTrue(
OPENMRS_SHORT_NAME_CANNOT_BE_PREFERRED in stderr_stub.getvalue())
self.assertTrue(OPENMRS_NAMES_EXCEPT_SHORT_MUST_BE_UNIQUE in
stderr_stub.getvalue())
self.assertEquals(
2,
Concept.objects.exclude(
concept_class__in=LOOKUP_CONCEPT_CLASSES).count())
self.assertEquals(
2,
ConceptVersion.objects.exclude(
concept_class__in=LOOKUP_CONCEPT_CLASSES).count())
def test_import_job_for_one_record(self):
stdout_stub = TestStream()
importer = ConceptsImporter(self.source1, self.testfile, 'test',
stdout_stub, TestStream())
importer.import_concepts(total=1)
self.assertTrue(
'Created new concept: 1 = Diagnosis' in stdout_stub.getvalue())
self.assertTrue(
'Finished importing concepts!' in stdout_stub.getvalue())
inserted_concept = Concept.objects.get(mnemonic='1')
self.assertEquals(inserted_concept.parent, self.source1)
inserted_concept_version = ConceptVersion.objects.get(
versioned_object_id=inserted_concept.id)
source_version_latest = SourceVersion.get_latest_version_of(
self.source1)
self.assertEquals(source_version_latest.concepts,
[inserted_concept_version.id])
def test_import_concepts_with_invalid_records(self):
self.testfile = open(
'./integration_tests/fixtures/valid_invalid_concepts.json', 'rb')
stderr_stub = TestStream()
importer = ConceptsImporter(self.source1, self.testfile, 'test',
TestStream(), stderr_stub)
importer.import_concepts(total=7)
self.assertTrue(
BASIC_AT_LEAST_ONE_FULLY_SPECIFIED_NAME in stderr_stub.getvalue())
self.assertTrue(BASIC_PREFERRED_NAME_UNIQUE_PER_SOURCE_LOCALE in
stderr_stub.getvalue())
self.assertEquals(
5,
Concept.objects.exclude(
concept_class__in=LOOKUP_CONCEPT_CLASSES).count())
self.assertEquals(
5,
ConceptVersion.objects.exclude(
concept_class__in=LOOKUP_CONCEPT_CLASSES).count())
def test_validation_error_file_exists(self):
self.testfile = open(
'./integration_tests/fixtures/valid_invalid_concepts.json', 'rb')
stderr_stub = TestStream()
output_file_name = 'test_file.csv'
logger = ValidationLogger(output_file_name=output_file_name)
importer = ConceptsImporter(create_source(
user=self.user1,
validation_schema=CUSTOM_VALIDATION_SCHEMA_OPENMRS),
self.testfile,
'test',
TestStream(),
stderr_stub,
validation_logger=logger)
importer.import_concepts(total=7)
from os import path, remove
self.assertTrue(path.exists(output_file_name))
remove(output_file_name)
def test_update_concept_with_invalid_record(self):
concept = Concept(
mnemonic='1',
created_by=self.user1,
updated_by=self.user1,
parent=self.source1,
concept_class='Diagnosis',
external_id='1AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA',
names=[self.name])
kwargs = {
'parent_resource': self.source1,
}
Concept.persist_new(concept, self.user1, **kwargs)
self.testfile = open('./integration_tests/fixtures/concept_without_fully_specified_name.json', 'rb')
stderr_stub = TestStream()
importer = ConceptsImporter(self.source1, self.testfile, 'test', TestStream(), stderr_stub)
importer.import_concepts(total=1)
self.assertTrue('Concept requires at least one fully specified name' in stderr_stub.getvalue())
self.assertEquals(1, Concept.objects.count())
self.assertEquals(1, ConceptVersion.objects.count())
def test_update_concept_with_invalid_record(self):
(concept, _) = create_concept(mnemonic='1',
user=self.user1,
source=self.source1,
names=[self.name])
self.testfile = open(
'./integration_tests/fixtures/concept_without_fully_specified_name.json',
'rb')
stderr_stub = TestStream()
importer = ConceptsImporter(self.source1, self.testfile, 'test',
TestStream(), stderr_stub)
importer.import_concepts(total=1)
self.assertTrue('Concept requires at least one fully specified name' in
stderr_stub.getvalue())
self.assertEquals(
1,
Concept.objects.exclude(concept_class='Concept Class').count())
self.assertEquals(
1,
ConceptVersion.objects.exclude(
concept_class='Concept Class').count())
def test_import_job_for_change_in_data(self):
stdout_stub = TestStream()
create_concept(mnemonic='1', user=self.user1, source=self.source1)
importer = ConceptsImporter(self.source1, self.testfile, 'test',
stdout_stub, TestStream())
importer.import_concepts(total=1)
all_concept_versions = ConceptVersion.objects.exclude(
concept_class='Concept Class')
self.assertEquals(len(all_concept_versions), 2)
latest_concept_version = [
version for version in all_concept_versions
if version.previous_version
][0]
self.assertEquals(len(latest_concept_version.names), 4)
self.assertTrue(('Updated concept, replacing version ID ' +
latest_concept_version.previous_version.id
) in stdout_stub.getvalue())
self.assertTrue(
'concepts of 1 1 - 1 updated' in stdout_stub.getvalue())
def test_update_mapping_with_invalid_record(self):
mapping = Mapping(parent=self.source1,
map_type='SAME-AS',
from_concept=self.concept3,
to_concept=self.concept1)
kwargs = {
'parent_resource': self.source1,
}
Mapping.persist_new(mapping, self.user1, **kwargs)
source_version = SourceVersion.get_latest_version_of(self.source1)
source_version.mappings = [mapping.id]
source_version.save()
stderr_stub = TestStream()
invalid_json_file = open(
'./integration_tests/fixtures/one_internal_invalid_mapping.json',
'rb')
importer = MappingsImporter(self.source1, invalid_json_file,
TestStream(), stderr_stub, 'test')
importer.import_mappings(total=1)
self.assertTrue(
"Must specify either 'to_concept' or 'to_source' & 'to_concept_code'. Cannot specify both."
in stderr_stub.getvalue())
def test_update_concept_with_invalid_record(self):
concept = Concept(mnemonic='1',
created_by=self.user1,
updated_by=self.user1,
parent=self.source1,
concept_class='Diagnosis',
external_id='1AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA',
names=[self.name])
kwargs = {
'parent_resource': self.source1,
}
Concept.persist_new(concept, self.user1, **kwargs)
self.testfile = open(
'./integration_tests/fixtures/concept_without_fully_specified_name.json',
'rb')
stderr_stub = TestStream()
importer = ConceptsImporter(self.source1, self.testfile, 'test',
TestStream(), stderr_stub)
importer.import_concepts(total=1)
self.assertTrue('Concept requires at least one fully specified name' in
stderr_stub.getvalue())
self.assertEquals(1, Concept.objects.count())
self.assertEquals(1, ConceptVersion.objects.count())
def test_validation_error_file_output(self):
self.testfile = open(
'./integration_tests/fixtures/valid_invalid_concepts.json', 'rb')
stderr_stub = TestStream()
logger = ValidationLogger(output=TestStream())
source = create_source(
self.user1, validation_schema=CUSTOM_VALIDATION_SCHEMA_OPENMRS)
importer = ConceptsImporter(source,
self.testfile,
'test',
TestStream(),
stderr_stub,
validation_logger=logger)
importer.import_concepts(total=7)
self.assertTrue('MNEMONIC;ERROR;JSON' in logger.output.getvalue())
self.assertTrue('4;%s' % OPENMRS_AT_LEAST_ONE_FULLY_SPECIFIED_NAME in
logger.output.getvalue())
self.assertTrue('7;%s' %
OPENMRS_FULLY_SPECIFIED_NAME_UNIQUE_PER_SOURCE_LOCALE
in logger.output.getvalue())
def test_import_concepts_into_openmrs_validated_source_with_valid_records(self):
test_file = open('./integration_tests/fixtures/concepts_for_openmrs_validation.json', 'rb')
stderr_stub = TestStream()
user = create_user()
source = create_source(user, validation_schema=CUSTOM_VALIDATION_SCHEMA_OPENMRS)
importer = ConceptsImporter(source, test_file, 'test', TestStream(), stderr_stub)
importer.import_concepts(total=5)
self.assertTrue("Custom validation rules require a concept to have exactly one preferred name" in stderr_stub.getvalue())
self.assertTrue("Custom validation rules require a preferred name to be different than a short name" in stderr_stub.getvalue())
self.assertTrue("Custom validation rules require a preferred name not to be an index/search term" in stderr_stub.getvalue())
self.assertTrue("Custom validation rules require all names except type=SHORT to be unique" in stderr_stub.getvalue())
self.assertEquals(2, Concept.objects.count())
self.assertEquals(2, ConceptVersion.objects.count())
def test_import_single_concept_without_fully_specified_name(self):
self.testfile = open('./integration_tests/fixtures/concept_without_fully_specified_name.json', 'rb')
stderr_stub = TestStream()
importer = ConceptsImporter(self.source1, self.testfile, 'test', TestStream(), stderr_stub)
importer.import_concepts(total=1)
self.assertTrue('Concept requires at least one fully specified name' in stderr_stub.getvalue())
