def clean_subscriptions():
ingestion_management = IngestionManagementServiceClient()
pubsub = PubsubManagementServiceClient()
rr = ResourceRegistryServiceClient()
ingestion_config_ids = ingestion_management.list_ingestion_configurations(id_only=True)
for ic in ingestion_config_ids:
assocs = rr.find_associations(subject=ic, predicate=PRED.hasSubscription, id_only=False)
for assoc in assocs:
rr.delete_association(assoc)
try:
pubsub.deactivate_subscription(assoc.o)
except:
pass
pubsub.delete_subscription(assoc.o)
class TestObservatoryManagementServiceIntegration(IonIntegrationTestCase):
def setUp(self):
# Start container
#print 'instantiating container'
self._start_container()
#container = Container()
#print 'starting container'
#container.start()
#print 'started container'
self.container.start_rel_from_url('res/deploy/r2deploy.yml')
self.RR = ResourceRegistryServiceClient(node=self.container.node)
self.RR2 = EnhancedResourceRegistryClient(self.RR)
self.OMS = ObservatoryManagementServiceClient(node=self.container.node)
self.org_management_service = OrgManagementServiceClient(node=self.container.node)
self.IMS = InstrumentManagementServiceClient(node=self.container.node)
self.dpclient = DataProductManagementServiceClient(node=self.container.node)
self.pubsubcli = PubsubManagementServiceClient(node=self.container.node)
self.damsclient = DataAcquisitionManagementServiceClient(node=self.container.node)
self.dataset_management = DatasetManagementServiceClient()
#print 'TestObservatoryManagementServiceIntegration: started services'
self.event_publisher = EventPublisher()
# @unittest.skip('this exists only for debugging the launch process')
# def test_just_the_setup(self):
# return
def destroy(self, resource_ids):
self.OMS.force_delete_observatory(resource_ids.observatory_id)
self.OMS.force_delete_subsite(resource_ids.subsite_id)
self.OMS.force_delete_subsite(resource_ids.subsite2_id)
self.OMS.force_delete_subsite(resource_ids.subsiteb_id)
self.OMS.force_delete_subsite(resource_ids.subsitez_id)
self.OMS.force_delete_platform_site(resource_ids.platform_site_id)
self.OMS.force_delete_platform_site(resource_ids.platform_siteb_id)
self.OMS.force_delete_platform_site(resource_ids.platform_siteb2_id)
self.OMS.force_delete_platform_site(resource_ids.platform_site3_id)
self.OMS.force_delete_instrument_site(resource_ids.instrument_site_id)
self.OMS.force_delete_instrument_site(resource_ids.instrument_site2_id)
self.OMS.force_delete_instrument_site(resource_ids.instrument_siteb3_id)
self.OMS.force_delete_instrument_site(resource_ids.instrument_site4_id)
#@unittest.skip('targeting')
def test_observatory_management(self):
resources = self._make_associations()
self._do_test_find_related_sites(resources)
self._do_test_get_sites_devices_status(resources)
self._do_test_find_site_data_products(resources)
self._do_test_find_related_frames_of_reference(resources)
self._do_test_create_geospatial_point_center(resources)
self._do_test_find_observatory_org(resources)
self.destroy(resources)
def _do_test_find_related_sites(self, resources):
site_resources, site_children = self.OMS.find_related_sites(resources.org_id)
#import sys, pprint
#print >> sys.stderr, pprint.pformat(site_resources)
#print >> sys.stderr, pprint.pformat(site_children)
#self.assertIn(resources.org_id, site_resources)
self.assertIn(resources.observatory_id, site_resources)
self.assertIn(resources.subsite_id, site_resources)
self.assertIn(resources.subsite_id, site_resources)
self.assertIn(resources.subsite2_id, site_resources)
self.assertIn(resources.platform_site_id, site_resources)
self.assertIn(resources.instrument_site_id, site_resources)
self.assertEquals(len(site_resources), 13)
self.assertEquals(site_resources[resources.observatory_id].type_, RT.Observatory)
self.assertIn(resources.org_id, site_children)
self.assertIn(resources.observatory_id, site_children)
self.assertIn(resources.subsite_id, site_children)
self.assertIn(resources.subsite_id, site_children)
self.assertIn(resources.subsite2_id, site_children)
self.assertIn(resources.platform_site_id, site_children)
self.assertNotIn(resources.instrument_site_id, site_children)
self.assertEquals(len(site_children), 9)
self.assertIsInstance(site_children[resources.subsite_id], list)
self.assertEquals(len(site_children[resources.subsite_id]), 2)
def _do_test_get_sites_devices_status(self, resources):
result_dict = self.OMS.get_sites_devices_status(resources.org_id)
site_resources = result_dict.get("site_resources", None)
site_children = result_dict.get("site_children", None)
self.assertEquals(len(site_resources), 14)
self.assertEquals(len(site_children), 9)
result_dict = self.OMS.get_sites_devices_status(resources.org_id, include_devices=True, include_status=True)
log.debug("RESULT DICT: %s", result_dict.keys())
site_resources = result_dict.get("site_resources", None)
site_children = result_dict.get("site_children", None)
site_status = result_dict.get("site_status", None)
self.assertEquals(len(site_resources), 14)
self.assertEquals(len(site_children), 9)
result_dict = self.OMS.get_sites_devices_status(resources.observatory_id, include_devices=True, include_status=True)
site_resources = result_dict.get("site_resources")
site_children = result_dict.get("site_children")
site_status = result_dict.get("site_status")
self.assertEquals(len(site_resources), 13)
self.assertEquals(len(site_children), 8)
def _do_test_find_site_data_products(self, resources):
res_dict = self.OMS.find_site_data_products(resources.org_id)
#import sys, pprint
#print >> sys.stderr, pprint.pformat(res_dict)
self.assertIsNone(res_dict['data_product_resources'])
self.assertIn(resources.platform_device_id, res_dict['device_data_products'])
self.assertIn(resources.instrument_device_id, res_dict['device_data_products'])
#@unittest.skip('targeting')
def _do_test_find_related_frames_of_reference(self, stuff):
# finding subordinates gives a dict of obj lists, convert objs to ids
def idify(adict):
ids = {}
for k, v in adict.iteritems():
ids[k] = []
for obj in v:
ids[k].append(obj._id)
return ids
# a short version of the function we're testing, with id-ify
def short(resource_id, output_types):
ret = self.OMS.find_related_frames_of_reference(resource_id,
output_types)
return idify(ret)
#set up associations first
stuff = self._make_associations()
#basic traversal of tree from instrument to platform
ids = short(stuff.instrument_site_id, [RT.PlatformSite])
self.assertIn(RT.PlatformSite, ids)
self.assertIn(stuff.platform_site_id, ids[RT.PlatformSite])
self.assertIn(stuff.platform_siteb_id, ids[RT.PlatformSite])
self.assertNotIn(stuff.platform_siteb2_id, ids[RT.PlatformSite])
#since this is the first search, just make sure the input inst_id got stripped
if RT.InstrumentSite in ids:
self.assertNotIn(stuff.instrument_site_id, ids[RT.InstrumentSite])
#basic traversal of tree from platform to instrument
ids = short(stuff.platform_siteb_id, [RT.InstrumentSite])
self.assertIn(RT.InstrumentSite, ids)
self.assertIn(stuff.instrument_site_id, ids[RT.InstrumentSite])
self.assertNotIn(stuff.instrument_site2_id, ids[RT.InstrumentSite])
#full traversal of tree from observatory down to instrument
ids = short(stuff.observatory_id, [RT.InstrumentSite])
self.assertIn(RT.InstrumentSite, ids)
self.assertIn(stuff.instrument_site_id, ids[RT.InstrumentSite])
#full traversal of tree from instrument to observatory
ids = short(stuff.instrument_site_id, [RT.Observatory])
self.assertIn(RT.Observatory, ids)
self.assertIn(stuff.observatory_id, ids[RT.Observatory])
#partial traversal, only down to platform
ids = short(stuff.observatory_id, [RT.Subsite, RT.PlatformSite])
self.assertIn(RT.PlatformSite, ids)
self.assertIn(RT.Subsite, ids)
self.assertIn(stuff.platform_site_id, ids[RT.PlatformSite])
self.assertIn(stuff.platform_siteb_id, ids[RT.PlatformSite])
self.assertIn(stuff.platform_siteb2_id, ids[RT.PlatformSite])
self.assertIn(stuff.platform_site3_id, ids[RT.PlatformSite])
self.assertIn(stuff.subsite_id, ids[RT.Subsite])
self.assertIn(stuff.subsite2_id, ids[RT.Subsite])
self.assertIn(stuff.subsitez_id, ids[RT.Subsite])
self.assertIn(stuff.subsiteb_id, ids[RT.Subsite])
self.assertNotIn(RT.InstrumentSite, ids)
#partial traversal, only down to platform
ids = short(stuff.instrument_site_id, [RT.Subsite, RT.PlatformSite])
self.assertIn(RT.PlatformSite, ids)
self.assertIn(RT.Subsite, ids)
self.assertIn(stuff.platform_siteb_id, ids[RT.PlatformSite])
self.assertIn(stuff.platform_site_id, ids[RT.PlatformSite])
self.assertIn(stuff.subsite_id, ids[RT.Subsite])
self.assertIn(stuff.subsiteb_id, ids[RT.Subsite])
self.assertNotIn(stuff.subsite2_id, ids[RT.Subsite])
self.assertNotIn(stuff.subsitez_id, ids[RT.Subsite])
self.assertNotIn(stuff.platform_siteb2_id, ids[RT.PlatformSite])
self.assertNotIn(RT.Observatory, ids)
self.destroy(stuff)
def _make_associations(self):
"""
create one of each resource and association used by OMS
to guard against problems in ion-definitions
"""
#raise unittest.SkipTest("https://jira.oceanobservatories.org/tasks/browse/CISWCORE-41")
"""
the tree we're creating (observatory, sites, platforms, instruments)
rows are lettered, colums numbered.
- first row is implied a
- first column is implied 1
- site Z, just because
O--Sz
|
S--S2--P3--I4
|
Sb-Pb2-Ib3
|
P--I2 <- PlatformDevice, InstrumentDevice2
|
Pb <- PlatformDevice b
|
I <- InstrumentDevice
"""
org_id = self.OMS.create_marine_facility(any_old(RT.Org))
def create_under_org(resource_type, extra_fields=None):
obj = any_old(resource_type, extra_fields)
if RT.InstrumentDevice == resource_type:
resource_id = self.IMS.create_instrument_device(obj)
else:
resource_id, _ = self.RR.create(obj)
self.OMS.assign_resource_to_observatory_org(resource_id=resource_id, org_id=org_id)
return resource_id
#stuff we control
observatory_id = create_under_org(RT.Observatory)
subsite_id = create_under_org(RT.Subsite)
subsite2_id = create_under_org(RT.Subsite)
subsiteb_id = create_under_org(RT.Subsite)
subsitez_id = create_under_org(RT.Subsite)
platform_site_id = create_under_org(RT.PlatformSite)
platform_siteb_id = create_under_org(RT.PlatformSite)
platform_siteb2_id = create_under_org(RT.PlatformSite)
platform_site3_id = create_under_org(RT.PlatformSite)
instrument_site_id = create_under_org(RT.InstrumentSite)
instrument_site2_id = create_under_org(RT.InstrumentSite)
instrument_siteb3_id = create_under_org(RT.InstrumentSite)
instrument_site4_id = create_under_org(RT.InstrumentSite)
#stuff we associate to
instrument_device_id = create_under_org(RT.InstrumentDevice)
instrument_device2_id = create_under_org(RT.InstrumentDevice)
platform_device_id = create_under_org(RT.PlatformDevice)
platform_deviceb_id = create_under_org(RT.PlatformDevice)
instrument_model_id, _ = self.RR.create(any_old(RT.InstrumentModel))
platform_model_id, _ = self.RR.create(any_old(RT.PlatformModel))
deployment_id, _ = self.RR.create(any_old(RT.Deployment))
#observatory
self.RR.create_association(observatory_id, PRED.hasSite, subsite_id)
self.RR.create_association(observatory_id, PRED.hasSite, subsitez_id)
#site
self.RR.create_association(subsite_id, PRED.hasSite, subsite2_id)
self.RR.create_association(subsite_id, PRED.hasSite, subsiteb_id)
self.RR.create_association(subsite2_id, PRED.hasSite, platform_site3_id)
self.RR.create_association(subsiteb_id, PRED.hasSite, platform_siteb2_id)
self.RR.create_association(subsiteb_id, PRED.hasSite, platform_site_id)
#platform_site(s)
self.RR.create_association(platform_site3_id, PRED.hasSite, instrument_site4_id)
self.RR.create_association(platform_siteb2_id, PRED.hasSite, instrument_siteb3_id)
self.RR.create_association(platform_site_id, PRED.hasSite, instrument_site2_id)
self.RR.create_association(platform_site_id, PRED.hasSite, platform_siteb_id)
self.RR.create_association(platform_siteb_id, PRED.hasSite, instrument_site_id)
self.RR.create_association(platform_siteb_id, PRED.hasDevice, platform_deviceb_id)
#test network parent link
self.OMS.assign_device_to_network_parent(platform_device_id, platform_deviceb_id)
self.RR.create_association(platform_site_id, PRED.hasModel, platform_model_id)
self.RR.create_association(platform_site_id, PRED.hasDevice, platform_device_id)
self.RR.create_association(platform_site_id, PRED.hasDeployment, deployment_id)
#instrument_site(s)
self.RR.create_association(instrument_site_id, PRED.hasModel, instrument_model_id)
self.RR.create_association(instrument_site_id, PRED.hasDevice, instrument_device_id)
self.RR.create_association(instrument_site_id, PRED.hasDeployment, deployment_id)
self.RR.create_association(instrument_site2_id, PRED.hasDevice, instrument_device2_id)
#platform_device
self.RR.create_association(platform_device_id, PRED.hasModel, platform_model_id)
#instrument_device
self.RR.create_association(instrument_device_id, PRED.hasModel, instrument_model_id)
self.RR.create_association(instrument_device2_id, PRED.hasModel, instrument_model_id)
ret = DotDict()
ret.org_id = org_id
ret.observatory_id = observatory_id
ret.subsite_id = subsite_id
ret.subsite2_id = subsite2_id
ret.subsiteb_id = subsiteb_id
ret.subsitez_id = subsitez_id
ret.platform_site_id = platform_site_id
ret.platform_siteb_id = platform_siteb_id
ret.platform_siteb2_id = platform_siteb2_id
ret.platform_site3_id = platform_site3_id
ret.instrument_site_id = instrument_site_id
ret.instrument_site2_id = instrument_site2_id
ret.instrument_siteb3_id = instrument_siteb3_id
ret.instrument_site4_id = instrument_site4_id
ret.instrument_device_id = instrument_device_id
ret.instrument_device2_id = instrument_device2_id
ret.platform_device_id = platform_device_id
ret.platform_deviceb_id = platform_deviceb_id
ret.instrument_model_id = instrument_model_id
ret.platform_model_id = platform_model_id
ret.deployment_id = deployment_id
return ret
#@unittest.skip("targeting")
def test_create_observatory(self):
observatory_obj = IonObject(RT.Observatory,
name='TestFacility',
description='some new mf')
observatory_id = self.OMS.create_observatory(observatory_obj)
self.OMS.force_delete_observatory(observatory_id)
#@unittest.skip("targeting")
def _do_test_create_geospatial_point_center(self, resources):
platformsite_obj = IonObject(RT.PlatformSite,
name='TestPlatformSite',
description='some new TestPlatformSite')
geo_index_obj = IonObject(OT.GeospatialBounds)
geo_index_obj.geospatial_latitude_limit_north = 20.0
geo_index_obj.geospatial_latitude_limit_south = 10.0
geo_index_obj.geospatial_longitude_limit_east = 15.0
geo_index_obj.geospatial_longitude_limit_west = 20.0
platformsite_obj.constraint_list = [geo_index_obj]
platformsite_id = self.OMS.create_platform_site(platformsite_obj)
# now get the dp back to see if it was updated
platformsite_obj = self.OMS.read_platform_site(platformsite_id)
self.assertEquals('some new TestPlatformSite', platformsite_obj.description)
self.assertAlmostEqual(15.0, platformsite_obj.geospatial_point_center.lat, places=1)
#now adjust a few params
platformsite_obj.description = 'some old TestPlatformSite'
geo_index_obj = IonObject(OT.GeospatialBounds)
geo_index_obj.geospatial_latitude_limit_north = 30.0
geo_index_obj.geospatial_latitude_limit_south = 20.0
platformsite_obj.constraint_list = [geo_index_obj]
update_result = self.OMS.update_platform_site(platformsite_obj)
# now get the dp back to see if it was updated
platformsite_obj = self.OMS.read_platform_site(platformsite_id)
self.assertEquals('some old TestPlatformSite', platformsite_obj.description)
self.assertAlmostEqual(25.0, platformsite_obj.geospatial_point_center.lat, places=1)
self.OMS.force_delete_platform_site(platformsite_id)
#@unittest.skip("targeting")
def _do_test_find_observatory_org(self, resources):
log.debug("Make TestOrg")
org_obj = IonObject(RT.Org,
name='TestOrg',
description='some new mf org')
org_id = self.OMS.create_marine_facility(org_obj)
log.debug("Make Observatory")
observatory_obj = IonObject(RT.Observatory,
name='TestObservatory',
description='some new obs')
observatory_id = self.OMS.create_observatory(observatory_obj)
log.debug("assign observatory to org")
self.OMS.assign_resource_to_observatory_org(observatory_id, org_id)
log.debug("verify assigment")
org_objs = self.OMS.find_org_by_observatory(observatory_id)
self.assertEqual(1, len(org_objs))
self.assertEqual(org_id, org_objs[0]._id)
log.debug("org_id=<" + org_id + ">")
log.debug("create a subsite with parent Observatory")
subsite_obj = IonObject(RT.Subsite,
name= 'TestSubsite',
description = 'sample subsite')
subsite_id = self.OMS.create_subsite(subsite_obj, observatory_id)
self.assertIsNotNone(subsite_id, "Subsite not created.")
log.debug("verify that Subsite is linked to Observatory")
mf_subsite_assoc = self.RR.get_association(observatory_id, PRED.hasSite, subsite_id)
self.assertIsNotNone(mf_subsite_assoc, "Subsite not connected to Observatory.")
log.debug("add the Subsite as a resource of this Observatory")
self.OMS.assign_resource_to_observatory_org(resource_id=subsite_id, org_id=org_id)
log.debug("verify that Subsite is linked to Org")
org_subsite_assoc = self.RR.get_association(org_id, PRED.hasResource, subsite_id)
self.assertIsNotNone(org_subsite_assoc, "Subsite not connected as resource to Org.")
log.debug("create a logical platform with parent Subsite")
platform_site_obj = IonObject(RT.PlatformSite,
name= 'TestPlatformSite',
description = 'sample logical platform')
platform_site_id = self.OMS.create_platform_site(platform_site_obj, subsite_id)
self.assertIsNotNone(platform_site_id, "PlatformSite not created.")
log.debug("verify that PlatformSite is linked to Site")
site_lp_assoc = self.RR.get_association(subsite_id, PRED.hasSite, platform_site_id)
self.assertIsNotNone(site_lp_assoc, "PlatformSite not connected to Site.")
log.debug("add the PlatformSite as a resource of this Observatory")
self.OMS.assign_resource_to_observatory_org(resource_id=platform_site_id, org_id=org_id)
log.debug("verify that PlatformSite is linked to Org")
org_lp_assoc = self.RR.get_association(org_id, PRED.hasResource, platform_site_id)
self.assertIsNotNone(org_lp_assoc, "PlatformSite not connected as resource to Org.")
log.debug("create a logical instrument with parent logical platform")
instrument_site_obj = IonObject(RT.InstrumentSite,
name= 'TestInstrumentSite',
description = 'sample logical instrument')
instrument_site_id = self.OMS.create_instrument_site(instrument_site_obj, platform_site_id)
self.assertIsNotNone(instrument_site_id, "InstrumentSite not created.")
log.debug("verify that InstrumentSite is linked to PlatformSite")
li_lp_assoc = self.RR.get_association(platform_site_id, PRED.hasSite, instrument_site_id)
self.assertIsNotNone(li_lp_assoc, "InstrumentSite not connected to PlatformSite.")
log.debug("add the InstrumentSite as a resource of this Observatory")
self.OMS.assign_resource_to_observatory_org(resource_id=instrument_site_id, org_id=org_id)
log.debug("verify that InstrumentSite is linked to Org")
org_li_assoc = self.RR.get_association(org_id, PRED.hasResource, instrument_site_id)
self.assertIsNotNone(org_li_assoc, "InstrumentSite not connected as resource to Org.")
log.debug("remove the InstrumentSite as a resource of this Observatory")
self.OMS.unassign_resource_from_observatory_org(instrument_site_id, org_id)
log.debug("verify that InstrumentSite is linked to Org")
assocs,_ = self.RR.find_objects(org_id, PRED.hasResource, RT.InstrumentSite, id_only=True )
self.assertEqual(0, len(assocs))
log.debug("remove the InstrumentSite, association should drop automatically")
self.OMS.delete_instrument_site(instrument_site_id)
assocs, _ = self.RR.find_objects(platform_site_id, PRED.hasSite, RT.InstrumentSite, id_only=True )
self.assertEqual(0, len(assocs))
log.debug("remove the PlatformSite as a resource of this Observatory")
self.OMS.unassign_resource_from_observatory_org(platform_site_id, org_id)
log.debug("verify that PlatformSite is linked to Org")
assocs,_ = self.RR.find_objects(org_id, PRED.hasResource, RT.PlatformSite, id_only=True )
self.assertEqual(0, len(assocs))
log.debug("remove the Site as a resource of this Observatory")
self.OMS.unassign_resource_from_observatory_org(subsite_id, org_id)
log.debug("verify that Site is linked to Org")
assocs,_ = self.RR.find_objects(org_id, PRED.hasResource, RT.Subsite, id_only=True )
self.assertEqual(0, len(assocs))
self.RR.delete(org_id)
self.OMS.force_delete_observatory(observatory_id)
self.OMS.force_delete_subsite(subsite_id)
self.OMS.force_delete_platform_site(platform_site_id)
self.OMS.force_delete_instrument_site(instrument_site_id)
@attr('EXT')
def test_observatory_extensions(self):
obs_id = self.RR2.create(any_old(RT.Observatory))
pss_id = self.RR2.create(any_old(RT.PlatformSite, dict(alt_resource_type="StationSite")))
pas_id = self.RR2.create(any_old(RT.PlatformSite, dict(alt_resource_type="PlatformAssemblySite")))
pcs_id = self.RR2.create(any_old(RT.PlatformSite, dict(alt_resource_type="PlatformComponentSite")))
ins_id = self.RR2.create(any_old(RT.InstrumentSite))
obs_obj = self.RR2.read(obs_id)
pss_obj = self.RR2.read(pss_id)
pas_obj = self.RR2.read(pas_id)
pcs_obj = self.RR2.read(pcs_id)
ins_obj = self.RR2.read(ins_id)
self.RR2.create_association(obs_id, PRED.hasSite, pss_id)
self.RR2.create_association(pss_id, PRED.hasSite, pas_id)
self.RR2.create_association(pas_id, PRED.hasSite, pcs_id)
self.RR2.create_association(pcs_id, PRED.hasSite, ins_id)
extended_obs = self.OMS.get_observatory_site_extension(obs_id, user_id=12345)
self.assertEqual([pss_obj], extended_obs.computed.platform_station_sites.value)
self.assertEqual(ComputedValueAvailability.PROVIDED, extended_obs.computed.platform_station_sites.status)
self.assertEqual([pas_obj], extended_obs.computed.platform_assembly_sites.value)
self.assertEqual(ComputedValueAvailability.PROVIDED, extended_obs.computed.platform_assembly_sites.status)
self.assertEqual([pcs_obj], extended_obs.computed.platform_component_sites.value)
self.assertEqual(ComputedValueAvailability.PROVIDED, extended_obs.computed.platform_component_sites.status)
self.assertEqual([ins_obj], extended_obs.computed.instrument_sites.value)
extended_pss = self.OMS.get_observatory_site_extension(obs_id, user_id=12345)
self.assertEqual([pas_obj], extended_pss.computed.platform_assembly_sites.value)
self.assertEqual([pcs_obj], extended_pss.computed.platform_component_sites.value)
self.assertEqual([ins_obj], extended_pss.computed.instrument_sites.value)
extended_pas = self.OMS.get_observatory_site_extension(pas_id, user_id=12345)
self.assertEqual([pcs_obj], extended_pas.computed.platform_component_sites.value)
self.assertEqual([ins_obj], extended_pas.computed.instrument_sites.value)
extended_pcs = self.OMS.get_platform_component_site_extension(pcs_id, user_id=12345)
self.assertEqual([ins_obj], extended_pcs.computed.instrument_sites.value)
#@unittest.skip("in development...")
@attr('EXT')
@attr('EXT1')
def test_observatory_org_extended(self):
stuff = self._make_associations()
parsed_pdict_id = self.dataset_management.read_parameter_dictionary_by_name('ctd_parsed_param_dict',
id_only=True)
parsed_stream_def_id = self.pubsubcli.create_stream_definition(name='parsed',
parameter_dictionary_id=parsed_pdict_id)
tdom, sdom = time_series_domain()
sdom = sdom.dump()
tdom = tdom.dump()
dp_obj = IonObject(RT.DataProduct,
name='the parsed data',
description='ctd stream test',
temporal_domain = tdom,
spatial_domain = sdom)
data_product_id1 = self.dpclient.create_data_product(data_product=dp_obj,
stream_definition_id=parsed_stream_def_id)
self.damsclient.assign_data_product(input_resource_id=stuff.instrument_device_id,
data_product_id=data_product_id1)
#Create a user to be used as regular member
member_actor_obj = IonObject(RT.ActorIdentity, name='org member actor')
member_actor_id,_ = self.RR.create(member_actor_obj)
assert(member_actor_id)
member_actor_header = get_actor_header(member_actor_id)
member_user_obj = IonObject(RT.UserInfo, name='org member user')
member_user_id,_ = self.RR.create(member_user_obj)
assert(member_user_id)
self.RR.create_association(subject=member_actor_id, predicate=PRED.hasInfo, object=member_user_id)
#Build the Service Agreement Proposal to enroll a user actor
sap = IonObject(OT.EnrollmentProposal,consumer=member_actor_id, provider=stuff.org_id )
sap_response = self.org_management_service.negotiate(sap, headers=member_actor_header )
#enroll the member without using negotiation
self.org_management_service.enroll_member(org_id=stuff.org_id, actor_id=member_actor_id)
#--------------------------------------------------------------------------------
# Get the extended Site (platformSite)
#--------------------------------------------------------------------------------
try:
extended_site = self.OMS.get_site_extension(stuff.platform_site_id)
except:
log.error('failed to get extended site', exc_info=True)
raise
log.debug("extended_site: %r ", extended_site)
self.assertEqual(1, len(extended_site.platform_devices))
self.assertEqual(1, len(extended_site.platform_models))
self.assertEqual(stuff.platform_device_id, extended_site.platform_devices[0]._id)
self.assertEqual(stuff.platform_model_id, extended_site.platform_models[0]._id)
log.debug("verify that PlatformDeviceb is linked to PlatformDevice with hasNetworkParent link")
associations = self.RR.find_associations(subject=stuff.platform_deviceb_id, predicate=PRED.hasNetworkParent, object=stuff.platform_device_id, id_only=True)
self.assertIsNotNone(associations, "PlatformDevice child not connected to PlatformDevice parent.")
#--------------------------------------------------------------------------------
# Get the extended Org
#--------------------------------------------------------------------------------
#test the extended resource
extended_org = self.OMS.get_marine_facility_extension(stuff.org_id)
log.debug("test_observatory_org_extended: extended_org: %s ", str(extended_org))
#self.assertEqual(2, len(extended_org.instruments_deployed) )
#self.assertEqual(1, len(extended_org.platforms_not_deployed) )
self.assertEqual(2, extended_org.number_of_platforms)
self.assertEqual(2, len(extended_org.platform_models) )
self.assertEqual(2, extended_org.number_of_instruments)
self.assertEqual(2, len(extended_org.instrument_models) )
self.assertEqual(1, len(extended_org.members))
self.assertNotEqual(extended_org.members[0]._id, member_actor_id)
self.assertEqual(extended_org.members[0]._id, member_user_id)
self.assertEqual(1, len(extended_org.open_requests))
self.assertTrue(len(extended_site.deployments)>0)
self.assertEqual(len(extended_site.deployments), len(extended_site.deployment_info))
#test the extended resource of the ION org
ion_org_id = self.org_management_service.find_org()
extended_org = self.OMS.get_marine_facility_extension(ion_org_id._id, user_id=12345)
log.debug("test_observatory_org_extended: extended_ION_org: %s ", str(extended_org))
self.assertEqual(1, len(extended_org.members))
self.assertEqual(0, extended_org.number_of_platforms)
#self.assertEqual(1, len(extended_org.sites))
#--------------------------------------------------------------------------------
# Get the extended Site
#--------------------------------------------------------------------------------
#create device state events to use for op /non-op filtering in extended
t = get_ion_ts()
self.event_publisher.publish_event( ts_created= t, event_type = 'ResourceAgentStateEvent',
origin = stuff.instrument_device_id, state=ResourceAgentState.STREAMING )
self.event_publisher.publish_event( ts_created= t, event_type = 'ResourceAgentStateEvent',
origin = stuff.instrument_device2_id, state=ResourceAgentState.INACTIVE )
extended_site = self.OMS.get_site_extension(stuff.instrument_site2_id)
log.debug("test_observatory_org_extended: extended_site: %s ", str(extended_site))
self.dpclient.delete_data_product(data_product_id1)
class PubsubManagementIntTest(IonIntegrationTestCase):
def setUp(self):
self._start_container()
self.container.start_rel_from_url('res/deploy/r2deploy.yml')
self.pubsub_management = PubsubManagementServiceClient()
self.resource_registry = ResourceRegistryServiceClient()
self.dataset_management = DatasetManagementServiceClient()
self.data_product_management = DataProductManagementServiceClient()
self.pdicts = {}
self.queue_cleanup = list()
self.exchange_cleanup = list()
self.context_ids = set()
def tearDown(self):
for queue in self.queue_cleanup:
xn = self.container.ex_manager.create_xn_queue(queue)
xn.delete()
for exchange in self.exchange_cleanup:
xp = self.container.ex_manager.create_xp(exchange)
xp.delete()
self.cleanup_contexts()
def test_stream_def_crud(self):
# Test Creation
pdict = DatasetManagementService.get_parameter_dictionary_by_name('ctd_parsed_param_dict')
stream_definition_id = self.pubsub_management.create_stream_definition('ctd parsed', parameter_dictionary_id=pdict.identifier)
self.addCleanup(self.pubsub_management.delete_stream_definition, stream_definition_id)
# Make sure there is an assoc
self.assertTrue(self.resource_registry.find_associations(subject=stream_definition_id, predicate=PRED.hasParameterDictionary, object=pdict.identifier, id_only=True))
# Test Reading
stream_definition = self.pubsub_management.read_stream_definition(stream_definition_id)
self.assertTrue(PubsubManagementService._compare_pdicts(pdict.dump(), stream_definition.parameter_dictionary))
# Test comparisons
in_stream_definition_id = self.pubsub_management.create_stream_definition('L0 products', parameter_dictionary_id=pdict.identifier, available_fields=['time','temp','conductivity','pressure'])
self.addCleanup(self.pubsub_management.delete_stream_definition, in_stream_definition_id)
out_stream_definition_id = in_stream_definition_id
self.assertTrue(self.pubsub_management.compare_stream_definition(in_stream_definition_id, out_stream_definition_id))
self.assertTrue(self.pubsub_management.compatible_stream_definitions(in_stream_definition_id, out_stream_definition_id))
out_stream_definition_id = self.pubsub_management.create_stream_definition('L2 Products', parameter_dictionary_id=pdict.identifier, available_fields=['time','salinity','density'])
self.addCleanup(self.pubsub_management.delete_stream_definition, out_stream_definition_id)
self.assertFalse(self.pubsub_management.compare_stream_definition(in_stream_definition_id, out_stream_definition_id))
self.assertTrue(self.pubsub_management.compatible_stream_definitions(in_stream_definition_id, out_stream_definition_id))
@unittest.skip('Needs to be refactored for cleanup')
def test_validate_stream_defs(self):
self.addCleanup(self.cleanup_contexts)
#test no input
incoming_pdict_id = self._get_pdict(['TIME', 'LAT', 'LON', 'TEMPWAT_L0', 'CONDWAT_L0', 'PRESWAT_L0'])
outgoing_pdict_id = self._get_pdict(['DENSITY', 'PRACSAL', 'TEMPWAT_L1', 'CONDWAT_L1', 'PRESWAT_L1'])
available_fields_in = []
available_fields_out = []
incoming_stream_def_id = self.pubsub_management.create_stream_definition('in_sd_0', parameter_dictionary_id=incoming_pdict_id, available_fields=available_fields_in)
self.addCleanup(self.pubsub_management.delete_stream_definition, incoming_stream_def_id)
outgoing_stream_def_id = self.pubsub_management.create_stream_definition('out_sd_0', parameter_dictionary_id=outgoing_pdict_id, available_fields=available_fields_out)
self.addCleanup(self.pubsub_management.delete_stream_definition, outgoing_stream_def_id)
result = self.pubsub_management.validate_stream_defs(incoming_stream_def_id, outgoing_stream_def_id)
self.assertFalse(result)
#test input with no output
incoming_pdict_id = self._get_pdict(['TIME', 'LAT', 'LON', 'TEMPWAT_L0', 'CONDWAT_L0', 'PRESWAT_L0'])
outgoing_pdict_id = self._get_pdict(['DENSITY', 'PRACSAL', 'TEMPWAT_L1', 'CONDWAT_L1', 'PRESWAT_L1'])
available_fields_in = ['TIME', 'LAT', 'LON', 'TEMPWAT_L0', 'CONDWAT_L0', 'PRESWAT_L0']
available_fields_out = []
incoming_stream_def_id = self.pubsub_management.create_stream_definition('in_sd_1', parameter_dictionary_id=incoming_pdict_id, available_fields=available_fields_in)
self.addCleanup(self.pubsub_management.delete_stream_definition, incoming_stream_def_id)
outgoing_stream_def_id = self.pubsub_management.create_stream_definition('out_sd_1', parameter_dictionary_id=outgoing_pdict_id, available_fields=available_fields_out)
self.addCleanup(self.pubsub_management.delete_stream_definition, outgoing_stream_def_id)
result = self.pubsub_management.validate_stream_defs(incoming_stream_def_id, outgoing_stream_def_id)
self.assertTrue(result)
#test available field missing parameter context definition -- missing PRESWAT_L0
incoming_pdict_id = self._get_pdict(['TIME', 'LAT', 'LON', 'TEMPWAT_L0', 'CONDWAT_L0'])
outgoing_pdict_id = self._get_pdict(['DENSITY', 'PRACSAL', 'TEMPWAT_L1', 'CONDWAT_L1', 'PRESWAT_L1'])
available_fields_in = ['TIME', 'LAT', 'LON', 'TEMPWAT_L0', 'CONDWAT_L0', 'PRESWAT_L0']
available_fields_out = ['DENSITY']
incoming_stream_def_id = self.pubsub_management.create_stream_definition('in_sd_2', parameter_dictionary_id=incoming_pdict_id, available_fields=available_fields_in)
self.addCleanup(self.pubsub_management.delete_stream_definition, incoming_stream_def_id)
outgoing_stream_def_id = self.pubsub_management.create_stream_definition('out_sd_2', parameter_dictionary_id=outgoing_pdict_id, available_fields=available_fields_out)
self.addCleanup(self.pubsub_management.delete_stream_definition, outgoing_stream_def_id)
result = self.pubsub_management.validate_stream_defs(incoming_stream_def_id, outgoing_stream_def_id)
self.assertFalse(result)
#test l1 from l0
incoming_pdict_id = self._get_pdict(['TIME', 'LAT', 'LON', 'TEMPWAT_L0', 'CONDWAT_L0', 'PRESWAT_L0'])
outgoing_pdict_id = self._get_pdict(['TEMPWAT_L1', 'CONDWAT_L1', 'PRESWAT_L1'])
available_fields_in = ['TIME', 'LAT', 'LON', 'TEMPWAT_L0', 'CONDWAT_L0', 'PRESWAT_L0']
available_fields_out = ['TEMPWAT_L1', 'CONDWAT_L1', 'PRESWAT_L1']
incoming_stream_def_id = self.pubsub_management.create_stream_definition('in_sd_3', parameter_dictionary_id=incoming_pdict_id, available_fields=available_fields_in)
self.addCleanup(self.pubsub_management.delete_stream_definition, incoming_stream_def_id)
outgoing_stream_def_id = self.pubsub_management.create_stream_definition('out_sd_3', parameter_dictionary_id=outgoing_pdict_id, available_fields=available_fields_out)
self.addCleanup(self.pubsub_management.delete_stream_definition, outgoing_stream_def_id)
result = self.pubsub_management.validate_stream_defs(incoming_stream_def_id, outgoing_stream_def_id)
self.assertTrue(result)
#test l2 from l0
incoming_pdict_id = self._get_pdict(['TIME', 'LAT', 'LON', 'TEMPWAT_L0', 'CONDWAT_L0', 'PRESWAT_L0'])
outgoing_pdict_id = self._get_pdict(['TEMPWAT_L1', 'CONDWAT_L1', 'PRESWAT_L1', 'DENSITY', 'PRACSAL'])
available_fields_in = ['TIME', 'LAT', 'LON', 'TEMPWAT_L0', 'CONDWAT_L0', 'PRESWAT_L0']
available_fields_out = ['DENSITY', 'PRACSAL']
incoming_stream_def_id = self.pubsub_management.create_stream_definition('in_sd_4', parameter_dictionary_id=incoming_pdict_id, available_fields=available_fields_in)
self.addCleanup(self.pubsub_management.delete_stream_definition, incoming_stream_def_id)
outgoing_stream_def_id = self.pubsub_management.create_stream_definition('out_sd_4', parameter_dictionary_id=outgoing_pdict_id, available_fields=available_fields_out)
self.addCleanup(self.pubsub_management.delete_stream_definition, outgoing_stream_def_id)
result = self.pubsub_management.validate_stream_defs(incoming_stream_def_id, outgoing_stream_def_id)
self.assertTrue(result)
#test Ln from L0
incoming_pdict_id = self._get_pdict(['TIME', 'LAT', 'LON', 'TEMPWAT_L0', 'CONDWAT_L0', 'PRESWAT_L0'])
outgoing_pdict_id = self._get_pdict(['DENSITY','PRACSAL','TEMPWAT_L1', 'CONDWAT_L1', 'PRESWAT_L1'])
available_fields_in = ['TIME', 'LAT', 'LON', 'TEMPWAT_L0', 'CONDWAT_L0', 'PRESWAT_L0']
available_fields_out = ['DENSITY', 'PRACSAL', 'TEMPWAT_L1', 'CONDWAT_L1', 'PRESWAT_L1']
incoming_stream_def_id = self.pubsub_management.create_stream_definition('in_sd_5', parameter_dictionary_id=incoming_pdict_id, available_fields=available_fields_in)
self.addCleanup(self.pubsub_management.delete_stream_definition, incoming_stream_def_id)
outgoing_stream_def_id = self.pubsub_management.create_stream_definition('out_sd_5', parameter_dictionary_id=outgoing_pdict_id, available_fields=available_fields_out)
self.addCleanup(self.pubsub_management.delete_stream_definition, outgoing_stream_def_id)
result = self.pubsub_management.validate_stream_defs(incoming_stream_def_id, outgoing_stream_def_id)
self.assertTrue(result)
#test L2 from L1
incoming_pdict_id = self._get_pdict(['TIME', 'LAT', 'LON', 'TEMPWAT_L1', 'CONDWAT_L1', 'PRESWAT_L1'])
outgoing_pdict_id = self._get_pdict(['DENSITY','PRACSAL','TEMPWAT_L1', 'CONDWAT_L1', 'PRESWAT_L1'])
available_fields_in = ['TIME', 'LAT', 'LON', 'TEMPWAT_L1', 'CONDWAT_L1', 'PRESWAT_L1']
available_fields_out = ['DENSITY', 'PRACSAL']
incoming_stream_def_id = self.pubsub_management.create_stream_definition('in_sd_6', parameter_dictionary_id=incoming_pdict_id, available_fields=available_fields_in)
self.addCleanup(self.pubsub_management.delete_stream_definition, incoming_stream_def_id)
outgoing_stream_def_id = self.pubsub_management.create_stream_definition('out_sd_6', parameter_dictionary_id=outgoing_pdict_id, available_fields=available_fields_out)
self.addCleanup(self.pubsub_management.delete_stream_definition, outgoing_stream_def_id)
result = self.pubsub_management.validate_stream_defs(incoming_stream_def_id, outgoing_stream_def_id)
self.assertTrue(result)
#test L1 from L0 missing L0
incoming_pdict_id = self._get_pdict(['TIME', 'LAT', 'LON'])
outgoing_pdict_id = self._get_pdict(['TEMPWAT_L1', 'CONDWAT_L1', 'PRESWAT_L1'])
available_fields_in = ['TIME', 'LAT', 'LON']
available_fields_out = ['DENSITY', 'PRACSAL']
incoming_stream_def_id = self.pubsub_management.create_stream_definition('in_sd_7', parameter_dictionary_id=incoming_pdict_id, available_fields=available_fields_in)
self.addCleanup(self.pubsub_management.delete_stream_definition, incoming_stream_def_id)
outgoing_stream_def_id = self.pubsub_management.create_stream_definition('out_sd_7', parameter_dictionary_id=outgoing_pdict_id, available_fields=available_fields_out)
self.addCleanup(self.pubsub_management.delete_stream_definition, outgoing_stream_def_id)
result = self.pubsub_management.validate_stream_defs(incoming_stream_def_id, outgoing_stream_def_id)
self.assertFalse(result)
#test L2 from L0 missing L0
incoming_pdict_id = self._get_pdict(['TIME', 'LAT', 'LON'])
outgoing_pdict_id = self._get_pdict(['DENSITY', 'PRACSAL', 'TEMPWAT_L1', 'CONDWAT_L1', 'PRESWAT_L1'])
available_fields_in = ['TIME', 'LAT', 'LON']
available_fields_out = ['DENSITY', 'PRACSAL']
incoming_stream_def_id = self.pubsub_management.create_stream_definition('in_sd_8', parameter_dictionary_id=incoming_pdict_id, available_fields=available_fields_in)
self.addCleanup(self.pubsub_management.delete_stream_definition, incoming_stream_def_id)
outgoing_stream_def_id = self.pubsub_management.create_stream_definition('out_sd_8', parameter_dictionary_id=outgoing_pdict_id, available_fields=available_fields_out)
self.addCleanup(self.pubsub_management.delete_stream_definition, outgoing_stream_def_id)
result = self.pubsub_management.validate_stream_defs(incoming_stream_def_id, outgoing_stream_def_id)
self.assertFalse(result)
#test L2 from L0 missing L1
incoming_pdict_id = self._get_pdict(['TIME', 'LAT', 'LON', 'TEMPWAT_L0', 'CONDWAT_L0', 'PRESWAT_L0'])
outgoing_pdict_id = self._get_pdict(['DENSITY', 'PRACSAL'])
available_fields_in = ['TIME', 'LAT', 'LON', 'TEMPWAT_L0', 'CONDWAT_L0', 'PRESWAT_L0']
available_fields_out = ['DENSITY', 'PRACSAL']
incoming_stream_def_id = self.pubsub_management.create_stream_definition('in_sd_9', parameter_dictionary_id=incoming_pdict_id, available_fields=available_fields_in)
self.addCleanup(self.pubsub_management.delete_stream_definition, incoming_stream_def_id)
outgoing_stream_def_id = self.pubsub_management.create_stream_definition('out_sd_9', parameter_dictionary_id=outgoing_pdict_id, available_fields=available_fields_out)
self.addCleanup(self.pubsub_management.delete_stream_definition, outgoing_stream_def_id)
result = self.pubsub_management.validate_stream_defs(incoming_stream_def_id, outgoing_stream_def_id)
self.assertFalse(result)
def publish_on_stream(self, stream_id, msg):
stream = self.pubsub_management.read_stream(stream_id)
stream_route = stream.stream_route
publisher = StandaloneStreamPublisher(stream_id=stream_id, stream_route=stream_route)
publisher.publish(msg)
def test_stream_crud(self):
stream_def_id = self.pubsub_management.create_stream_definition('test_definition', stream_type='stream')
self.addCleanup(self.pubsub_management.delete_stream_definition, stream_def_id)
topic_id = self.pubsub_management.create_topic(name='test_topic', exchange_point='test_exchange')
self.addCleanup(self.pubsub_management.delete_topic, topic_id)
self.exchange_cleanup.append('test_exchange')
topic2_id = self.pubsub_management.create_topic(name='another_topic', exchange_point='outside')
self.addCleanup(self.pubsub_management.delete_topic, topic2_id)
stream_id, route = self.pubsub_management.create_stream(name='test_stream', topic_ids=[topic_id, topic2_id], exchange_point='test_exchange', stream_definition_id=stream_def_id)
topics, assocs = self.resource_registry.find_objects(subject=stream_id, predicate=PRED.hasTopic, id_only=True)
self.assertEquals(topics,[topic_id])
defs, assocs = self.resource_registry.find_objects(subject=stream_id, predicate=PRED.hasStreamDefinition, id_only=True)
self.assertTrue(len(defs))
stream = self.pubsub_management.read_stream(stream_id)
self.assertEquals(stream.name,'test_stream')
self.pubsub_management.delete_stream(stream_id)
with self.assertRaises(NotFound):
self.pubsub_management.read_stream(stream_id)
defs, assocs = self.resource_registry.find_objects(subject=stream_id, predicate=PRED.hasStreamDefinition, id_only=True)
self.assertFalse(len(defs))
topics, assocs = self.resource_registry.find_objects(subject=stream_id, predicate=PRED.hasTopic, id_only=True)
self.assertFalse(len(topics))
def test_data_product_subscription(self):
pdict_id = self.dataset_management.read_parameter_dictionary_by_name('ctd_parsed_param_dict', id_only=True)
stream_def_id = self.pubsub_management.create_stream_definition('ctd parsed', parameter_dictionary_id=pdict_id)
self.addCleanup(self.pubsub_management.delete_stream_definition, stream_def_id)
tdom, sdom = time_series_domain()
dp = DataProduct(name='ctd parsed')
dp.spatial_domain = sdom.dump()
dp.temporal_domain = tdom.dump()
data_product_id = self.data_product_management.create_data_product(data_product=dp, stream_definition_id=stream_def_id)
self.addCleanup(self.data_product_management.delete_data_product, data_product_id)
subscription_id = self.pubsub_management.create_subscription('validator', data_product_ids=[data_product_id])
self.addCleanup(self.pubsub_management.delete_subscription, subscription_id)
validated = Event()
def validation(msg, route, stream_id):
validated.set()
stream_ids, _ = self.resource_registry.find_objects(subject=data_product_id, predicate=PRED.hasStream, id_only=True)
dp_stream_id = stream_ids.pop()
validator = StandaloneStreamSubscriber('validator', callback=validation)
validator.start()
self.addCleanup(validator.stop)
self.pubsub_management.activate_subscription(subscription_id)
self.addCleanup(self.pubsub_management.deactivate_subscription, subscription_id)
route = self.pubsub_management.read_stream_route(dp_stream_id)
publisher = StandaloneStreamPublisher(dp_stream_id, route)
publisher.publish('hi')
self.assertTrue(validated.wait(10))
def test_subscription_crud(self):
stream_def_id = self.pubsub_management.create_stream_definition('test_definition', stream_type='stream')
stream_id, route = self.pubsub_management.create_stream(name='test_stream', exchange_point='test_exchange', stream_definition_id=stream_def_id)
subscription_id = self.pubsub_management.create_subscription(name='test subscription', stream_ids=[stream_id], exchange_name='test_queue')
self.exchange_cleanup.append('test_exchange')
subs, assocs = self.resource_registry.find_objects(subject=subscription_id,predicate=PRED.hasStream,id_only=True)
self.assertEquals(subs,[stream_id])
res, _ = self.resource_registry.find_resources(restype=RT.ExchangeName, name='test_queue', id_only=True)
self.assertEquals(len(res),1)
subs, assocs = self.resource_registry.find_subjects(object=subscription_id, predicate=PRED.hasSubscription, id_only=True)
self.assertEquals(subs[0], res[0])
subscription = self.pubsub_management.read_subscription(subscription_id)
self.assertEquals(subscription.exchange_name, 'test_queue')
self.pubsub_management.delete_subscription(subscription_id)
subs, assocs = self.resource_registry.find_objects(subject=subscription_id,predicate=PRED.hasStream,id_only=True)
self.assertFalse(len(subs))
subs, assocs = self.resource_registry.find_subjects(object=subscription_id, predicate=PRED.hasSubscription, id_only=True)
self.assertFalse(len(subs))
self.pubsub_management.delete_stream(stream_id)
self.pubsub_management.delete_stream_definition(stream_def_id)
def test_move_before_activate(self):
stream_id, route = self.pubsub_management.create_stream(name='test_stream', exchange_point='test_xp')
#--------------------------------------------------------------------------------
# Test moving before activate
#--------------------------------------------------------------------------------
subscription_id = self.pubsub_management.create_subscription('first_queue', stream_ids=[stream_id])
xn_ids, _ = self.resource_registry.find_resources(restype=RT.ExchangeName, name='first_queue', id_only=True)
subjects, _ = self.resource_registry.find_subjects(object=subscription_id, predicate=PRED.hasSubscription, id_only=True)
self.assertEquals(xn_ids[0], subjects[0])
self.pubsub_management.move_subscription(subscription_id, exchange_name='second_queue')
xn_ids, _ = self.resource_registry.find_resources(restype=RT.ExchangeName, name='second_queue', id_only=True)
subjects, _ = self.resource_registry.find_subjects(object=subscription_id, predicate=PRED.hasSubscription, id_only=True)
self.assertEquals(len(subjects),1)
self.assertEquals(subjects[0], xn_ids[0])
self.pubsub_management.delete_subscription(subscription_id)
self.pubsub_management.delete_stream(stream_id)
def test_move_activated_subscription(self):
stream_id, route = self.pubsub_management.create_stream(name='test_stream', exchange_point='test_xp')
#--------------------------------------------------------------------------------
# Test moving after activate
#--------------------------------------------------------------------------------
subscription_id = self.pubsub_management.create_subscription('first_queue', stream_ids=[stream_id])
self.pubsub_management.activate_subscription(subscription_id)
xn_ids, _ = self.resource_registry.find_resources(restype=RT.ExchangeName, name='first_queue', id_only=True)
subjects, _ = self.resource_registry.find_subjects(object=subscription_id, predicate=PRED.hasSubscription, id_only=True)
self.assertEquals(xn_ids[0], subjects[0])
self.verified = Event()
def verify(m,r,s):
self.assertEquals(m,'verified')
self.verified.set()
subscriber = StandaloneStreamSubscriber('second_queue', verify)
subscriber.start()
self.pubsub_management.move_subscription(subscription_id, exchange_name='second_queue')
xn_ids, _ = self.resource_registry.find_resources(restype=RT.ExchangeName, name='second_queue', id_only=True)
subjects, _ = self.resource_registry.find_subjects(object=subscription_id, predicate=PRED.hasSubscription, id_only=True)
self.assertEquals(len(subjects),1)
self.assertEquals(subjects[0], xn_ids[0])
publisher = StandaloneStreamPublisher(stream_id, route)
publisher.publish('verified')
self.assertTrue(self.verified.wait(2))
self.pubsub_management.deactivate_subscription(subscription_id)
self.pubsub_management.delete_subscription(subscription_id)
self.pubsub_management.delete_stream(stream_id)
def test_queue_cleanup(self):
stream_id, route = self.pubsub_management.create_stream('test_stream','xp1')
xn_objs, _ = self.resource_registry.find_resources(restype=RT.ExchangeName, name='queue1')
for xn_obj in xn_objs:
xn = self.container.ex_manager.create_xn_queue(xn_obj.name)
xn.delete()
subscription_id = self.pubsub_management.create_subscription('queue1',stream_ids=[stream_id])
xn_ids, _ = self.resource_registry.find_resources(restype=RT.ExchangeName, name='queue1')
self.assertEquals(len(xn_ids),1)
self.pubsub_management.delete_subscription(subscription_id)
xn_ids, _ = self.resource_registry.find_resources(restype=RT.ExchangeName, name='queue1')
self.assertEquals(len(xn_ids),0)
def test_activation_and_deactivation(self):
stream_id, route = self.pubsub_management.create_stream('stream1','xp1')
subscription_id = self.pubsub_management.create_subscription('sub1', stream_ids=[stream_id])
self.check1 = Event()
def verifier(m,r,s):
self.check1.set()
subscriber = StandaloneStreamSubscriber('sub1',verifier)
subscriber.start()
publisher = StandaloneStreamPublisher(stream_id, route)
publisher.publish('should not receive')
self.assertFalse(self.check1.wait(0.25))
self.pubsub_management.activate_subscription(subscription_id)
publisher.publish('should receive')
self.assertTrue(self.check1.wait(2))
self.check1.clear()
self.assertFalse(self.check1.is_set())
self.pubsub_management.deactivate_subscription(subscription_id)
publisher.publish('should not receive')
self.assertFalse(self.check1.wait(0.5))
self.pubsub_management.activate_subscription(subscription_id)
publisher.publish('should receive')
self.assertTrue(self.check1.wait(2))
subscriber.stop()
self.pubsub_management.deactivate_subscription(subscription_id)
self.pubsub_management.delete_subscription(subscription_id)
self.pubsub_management.delete_stream(stream_id)
def test_topic_crud(self):
topic_id = self.pubsub_management.create_topic(name='test_topic', exchange_point='test_xp')
self.exchange_cleanup.append('test_xp')
topic = self.pubsub_management.read_topic(topic_id)
self.assertEquals(topic.name,'test_topic')
self.assertEquals(topic.exchange_point, 'test_xp')
self.pubsub_management.delete_topic(topic_id)
with self.assertRaises(NotFound):
self.pubsub_management.read_topic(topic_id)
def test_full_pubsub(self):
self.sub1_sat = Event()
self.sub2_sat = Event()
def subscriber1(m,r,s):
self.sub1_sat.set()
def subscriber2(m,r,s):
self.sub2_sat.set()
sub1 = StandaloneStreamSubscriber('sub1', subscriber1)
sub1.start()
self.addCleanup(sub1.stop)
sub2 = StandaloneStreamSubscriber('sub2', subscriber2)
sub2.start()
self.addCleanup(sub2.stop)
log_topic = self.pubsub_management.create_topic('instrument_logs', exchange_point='instruments')
self.addCleanup(self.pubsub_management.delete_topic, log_topic)
science_topic = self.pubsub_management.create_topic('science_data', exchange_point='instruments')
self.addCleanup(self.pubsub_management.delete_topic, science_topic)
events_topic = self.pubsub_management.create_topic('notifications', exchange_point='events')
self.addCleanup(self.pubsub_management.delete_topic, events_topic)
log_stream, route = self.pubsub_management.create_stream('instrument1-logs', topic_ids=[log_topic], exchange_point='instruments')
self.addCleanup(self.pubsub_management.delete_stream, log_stream)
ctd_stream, route = self.pubsub_management.create_stream('instrument1-ctd', topic_ids=[science_topic], exchange_point='instruments')
self.addCleanup(self.pubsub_management.delete_stream, ctd_stream)
event_stream, route = self.pubsub_management.create_stream('notifications', topic_ids=[events_topic], exchange_point='events')
self.addCleanup(self.pubsub_management.delete_stream, event_stream)
raw_stream, route = self.pubsub_management.create_stream('temp', exchange_point='global.data')
self.addCleanup(self.pubsub_management.delete_stream, raw_stream)
subscription1 = self.pubsub_management.create_subscription('subscription1', stream_ids=[log_stream,event_stream], exchange_name='sub1')
self.addCleanup(self.pubsub_management.delete_subscription, subscription1)
subscription2 = self.pubsub_management.create_subscription('subscription2', exchange_points=['global.data'], stream_ids=[ctd_stream], exchange_name='sub2')
self.addCleanup(self.pubsub_management.delete_subscription, subscription2)
self.pubsub_management.activate_subscription(subscription1)
self.addCleanup(self.pubsub_management.deactivate_subscription, subscription1)
self.pubsub_management.activate_subscription(subscription2)
self.addCleanup(self.pubsub_management.deactivate_subscription, subscription2)
self.publish_on_stream(log_stream, 1)
self.assertTrue(self.sub1_sat.wait(4))
self.assertFalse(self.sub2_sat.is_set())
self.publish_on_stream(raw_stream,1)
self.assertTrue(self.sub1_sat.wait(4))
def test_topic_craziness(self):
self.msg_queue = Queue()
def subscriber1(m,r,s):
self.msg_queue.put(m)
sub1 = StandaloneStreamSubscriber('sub1', subscriber1)
sub1.start()
self.addCleanup(sub1.stop)
topic1 = self.pubsub_management.create_topic('topic1', exchange_point='xp1')
self.addCleanup(self.pubsub_management.delete_topic, topic1)
topic2 = self.pubsub_management.create_topic('topic2', exchange_point='xp1', parent_topic_id=topic1)
self.addCleanup(self.pubsub_management.delete_topic, topic2)
topic3 = self.pubsub_management.create_topic('topic3', exchange_point='xp1', parent_topic_id=topic1)
self.addCleanup(self.pubsub_management.delete_topic, topic3)
topic4 = self.pubsub_management.create_topic('topic4', exchange_point='xp1', parent_topic_id=topic2)
self.addCleanup(self.pubsub_management.delete_topic, topic4)
topic5 = self.pubsub_management.create_topic('topic5', exchange_point='xp1', parent_topic_id=topic2)
self.addCleanup(self.pubsub_management.delete_topic, topic5)
topic6 = self.pubsub_management.create_topic('topic6', exchange_point='xp1', parent_topic_id=topic3)
self.addCleanup(self.pubsub_management.delete_topic, topic6)
topic7 = self.pubsub_management.create_topic('topic7', exchange_point='xp1', parent_topic_id=topic3)
self.addCleanup(self.pubsub_management.delete_topic, topic7)
# Tree 2
topic8 = self.pubsub_management.create_topic('topic8', exchange_point='xp2')
self.addCleanup(self.pubsub_management.delete_topic, topic8)
topic9 = self.pubsub_management.create_topic('topic9', exchange_point='xp2', parent_topic_id=topic8)
self.addCleanup(self.pubsub_management.delete_topic, topic9)
topic10 = self.pubsub_management.create_topic('topic10', exchange_point='xp2', parent_topic_id=topic9)
self.addCleanup(self.pubsub_management.delete_topic, topic10)
topic11 = self.pubsub_management.create_topic('topic11', exchange_point='xp2', parent_topic_id=topic9)
self.addCleanup(self.pubsub_management.delete_topic, topic11)
topic12 = self.pubsub_management.create_topic('topic12', exchange_point='xp2', parent_topic_id=topic11)
self.addCleanup(self.pubsub_management.delete_topic, topic12)
topic13 = self.pubsub_management.create_topic('topic13', exchange_point='xp2', parent_topic_id=topic11)
self.addCleanup(self.pubsub_management.delete_topic, topic13)
self.exchange_cleanup.extend(['xp1','xp2'])
stream1_id, route = self.pubsub_management.create_stream('stream1', topic_ids=[topic7, topic4, topic5], exchange_point='xp1')
self.addCleanup(self.pubsub_management.delete_stream, stream1_id)
stream2_id, route = self.pubsub_management.create_stream('stream2', topic_ids=[topic8], exchange_point='xp2')
self.addCleanup(self.pubsub_management.delete_stream, stream2_id)
stream3_id, route = self.pubsub_management.create_stream('stream3', topic_ids=[topic10,topic13], exchange_point='xp2')
self.addCleanup(self.pubsub_management.delete_stream, stream3_id)
stream4_id, route = self.pubsub_management.create_stream('stream4', topic_ids=[topic9], exchange_point='xp2')
self.addCleanup(self.pubsub_management.delete_stream, stream4_id)
stream5_id, route = self.pubsub_management.create_stream('stream5', topic_ids=[topic11], exchange_point='xp2')
self.addCleanup(self.pubsub_management.delete_stream, stream5_id)
subscription1 = self.pubsub_management.create_subscription('sub1', topic_ids=[topic1])
self.addCleanup(self.pubsub_management.delete_subscription, subscription1)
subscription2 = self.pubsub_management.create_subscription('sub2', topic_ids=[topic8], exchange_name='sub1')
self.addCleanup(self.pubsub_management.delete_subscription, subscription2)
subscription3 = self.pubsub_management.create_subscription('sub3', topic_ids=[topic9], exchange_name='sub1')
self.addCleanup(self.pubsub_management.delete_subscription, subscription3)
subscription4 = self.pubsub_management.create_subscription('sub4', topic_ids=[topic10,topic13, topic11], exchange_name='sub1')
self.addCleanup(self.pubsub_management.delete_subscription, subscription4)
#--------------------------------------------------------------------------------
self.pubsub_management.activate_subscription(subscription1)
self.publish_on_stream(stream1_id,1)
self.assertEquals(self.msg_queue.get(timeout=10), 1)
with self.assertRaises(Empty):
self.msg_queue.get(timeout=0.1)
self.pubsub_management.deactivate_subscription(subscription1)
#--------------------------------------------------------------------------------
self.pubsub_management.activate_subscription(subscription2)
self.publish_on_stream(stream2_id,2)
self.assertEquals(self.msg_queue.get(timeout=10), 2)
with self.assertRaises(Empty):
self.msg_queue.get(timeout=0.1)
self.pubsub_management.deactivate_subscription(subscription2)
#--------------------------------------------------------------------------------
self.pubsub_management.activate_subscription(subscription3)
self.publish_on_stream(stream2_id, 3)
with self.assertRaises(Empty):
self.msg_queue.get(timeout=0.3)
self.publish_on_stream(stream3_id, 4)
self.assertEquals(self.msg_queue.get(timeout=10),4)
self.pubsub_management.deactivate_subscription(subscription3)
#--------------------------------------------------------------------------------
self.pubsub_management.activate_subscription(subscription4)
self.publish_on_stream(stream4_id, 5)
with self.assertRaises(Empty):
self.msg_queue.get(timeout=0.3)
self.publish_on_stream(stream5_id, 6)
self.assertEquals(self.msg_queue.get(timeout=10),6)
with self.assertRaises(Empty):
self.msg_queue.get(timeout=0.3)
self.pubsub_management.deactivate_subscription(subscription4)
#--------------------------------------------------------------------------------
def cleanup_contexts(self):
for context_id in self.context_ids:
self.dataset_management.delete_parameter_context(context_id)
def add_context_to_cleanup(self, context_id):
self.context_ids.add(context_id)
def _get_pdict(self, filter_values):
t_ctxt = ParameterContext('TIME', param_type=QuantityType(value_encoding=np.dtype('int64')))
t_ctxt.uom = 'seconds since 01-01-1900'
t_ctxt_id = self.dataset_management.create_parameter_context(name='TIME', parameter_context=t_ctxt.dump(), parameter_type='quantity<int64>', units=t_ctxt.uom)
self.add_context_to_cleanup(t_ctxt_id)
lat_ctxt = ParameterContext('LAT', param_type=ConstantType(QuantityType(value_encoding=np.dtype('float32'))), fill_value=-9999)
lat_ctxt.axis = AxisTypeEnum.LAT
lat_ctxt.uom = 'degree_north'
lat_ctxt_id = self.dataset_management.create_parameter_context(name='LAT', parameter_context=lat_ctxt.dump(), parameter_type='quantity<float32>', units=lat_ctxt.uom)
self.add_context_to_cleanup(lat_ctxt_id)
lon_ctxt = ParameterContext('LON', param_type=ConstantType(QuantityType(value_encoding=np.dtype('float32'))), fill_value=-9999)
lon_ctxt.axis = AxisTypeEnum.LON
lon_ctxt.uom = 'degree_east'
lon_ctxt_id = self.dataset_management.create_parameter_context(name='LON', parameter_context=lon_ctxt.dump(), parameter_type='quantity<float32>', units=lon_ctxt.uom)
self.add_context_to_cleanup(lon_ctxt_id)
# Independent Parameters
# Temperature - values expected to be the decimal results of conversion from hex
temp_ctxt = ParameterContext('TEMPWAT_L0', param_type=QuantityType(value_encoding=np.dtype('float32')), fill_value=-9999)
temp_ctxt.uom = 'deg_C'
temp_ctxt_id = self.dataset_management.create_parameter_context(name='TEMPWAT_L0', parameter_context=temp_ctxt.dump(), parameter_type='quantity<float32>', units=temp_ctxt.uom)
self.add_context_to_cleanup(temp_ctxt_id)
# Conductivity - values expected to be the decimal results of conversion from hex
cond_ctxt = ParameterContext('CONDWAT_L0', param_type=QuantityType(value_encoding=np.dtype('float32')), fill_value=-9999)
cond_ctxt.uom = 'S m-1'
cond_ctxt_id = self.dataset_management.create_parameter_context(name='CONDWAT_L0', parameter_context=cond_ctxt.dump(), parameter_type='quantity<float32>', units=cond_ctxt.uom)
self.add_context_to_cleanup(cond_ctxt_id)
# Pressure - values expected to be the decimal results of conversion from hex
press_ctxt = ParameterContext('PRESWAT_L0', param_type=QuantityType(value_encoding=np.dtype('float32')), fill_value=-9999)
press_ctxt.uom = 'dbar'
press_ctxt_id = self.dataset_management.create_parameter_context(name='PRESWAT_L0', parameter_context=press_ctxt.dump(), parameter_type='quantity<float32>', units=press_ctxt.uom)
self.add_context_to_cleanup(press_ctxt_id)
# Dependent Parameters
# TEMPWAT_L1 = (TEMPWAT_L0 / 10000) - 10
tl1_func = '(T / 10000) - 10'
tl1_pmap = {'T': 'TEMPWAT_L0'}
expr = NumexprFunction('TEMPWAT_L1', tl1_func, ['T'], param_map=tl1_pmap)
tempL1_ctxt = ParameterContext('TEMPWAT_L1', param_type=ParameterFunctionType(function=expr), variability=VariabilityEnum.TEMPORAL)
tempL1_ctxt.uom = 'deg_C'
tempL1_ctxt_id = self.dataset_management.create_parameter_context(name=tempL1_ctxt.name, parameter_context=tempL1_ctxt.dump(), parameter_type='pfunc', units=tempL1_ctxt.uom)
self.add_context_to_cleanup(tempL1_ctxt_id)
# CONDWAT_L1 = (CONDWAT_L0 / 100000) - 0.5
cl1_func = '(C / 100000) - 0.5'
cl1_pmap = {'C': 'CONDWAT_L0'}
expr = NumexprFunction('CONDWAT_L1', cl1_func, ['C'], param_map=cl1_pmap)
condL1_ctxt = ParameterContext('CONDWAT_L1', param_type=ParameterFunctionType(function=expr), variability=VariabilityEnum.TEMPORAL)
condL1_ctxt.uom = 'S m-1'
condL1_ctxt_id = self.dataset_management.create_parameter_context(name=condL1_ctxt.name, parameter_context=condL1_ctxt.dump(), parameter_type='pfunc', units=condL1_ctxt.uom)
self.add_context_to_cleanup(condL1_ctxt_id)
# Equation uses p_range, which is a calibration coefficient - Fixing to 679.34040721
# PRESWAT_L1 = (PRESWAT_L0 * p_range / (0.85 * 65536)) - (0.05 * p_range)
pl1_func = '(P * p_range / (0.85 * 65536)) - (0.05 * p_range)'
pl1_pmap = {'P': 'PRESWAT_L0', 'p_range': 679.34040721}
expr = NumexprFunction('PRESWAT_L1', pl1_func, ['P', 'p_range'], param_map=pl1_pmap)
presL1_ctxt = ParameterContext('PRESWAT_L1', param_type=ParameterFunctionType(function=expr), variability=VariabilityEnum.TEMPORAL)
presL1_ctxt.uom = 'S m-1'
presL1_ctxt_id = self.dataset_management.create_parameter_context(name=presL1_ctxt.name, parameter_context=presL1_ctxt.dump(), parameter_type='pfunc', units=presL1_ctxt.uom)
self.add_context_to_cleanup(presL1_ctxt_id)
# Density & practical salinity calucluated using the Gibbs Seawater library - available via python-gsw project:
# https://code.google.com/p/python-gsw/ & http://pypi.python.org/pypi/gsw/3.0.1
# PRACSAL = gsw.SP_from_C((CONDWAT_L1 * 10), TEMPWAT_L1, PRESWAT_L1)
owner = 'gsw'
sal_func = 'SP_from_C'
sal_arglist = ['C', 't', 'p']
sal_pmap = {'C': NumexprFunction('CONDWAT_L1*10', 'C*10', ['C'], param_map={'C': 'CONDWAT_L1'}), 't': 'TEMPWAT_L1', 'p': 'PRESWAT_L1'}
sal_kwargmap = None
expr = PythonFunction('PRACSAL', owner, sal_func, sal_arglist, sal_kwargmap, sal_pmap)
sal_ctxt = ParameterContext('PRACSAL', param_type=ParameterFunctionType(expr), variability=VariabilityEnum.TEMPORAL)
sal_ctxt.uom = 'g kg-1'
sal_ctxt_id = self.dataset_management.create_parameter_context(name=sal_ctxt.name, parameter_context=sal_ctxt.dump(), parameter_type='pfunc', units=sal_ctxt.uom)
self.add_context_to_cleanup(sal_ctxt_id)
# absolute_salinity = gsw.SA_from_SP(PRACSAL, PRESWAT_L1, longitude, latitude)
# conservative_temperature = gsw.CT_from_t(absolute_salinity, TEMPWAT_L1, PRESWAT_L1)
# DENSITY = gsw.rho(absolute_salinity, conservative_temperature, PRESWAT_L1)
owner = 'gsw'
abs_sal_expr = PythonFunction('abs_sal', owner, 'SA_from_SP', ['PRACSAL', 'PRESWAT_L1', 'LON','LAT'])
cons_temp_expr = PythonFunction('cons_temp', owner, 'CT_from_t', [abs_sal_expr, 'TEMPWAT_L1', 'PRESWAT_L1'])
dens_expr = PythonFunction('DENSITY', owner, 'rho', [abs_sal_expr, cons_temp_expr, 'PRESWAT_L1'])
dens_ctxt = ParameterContext('DENSITY', param_type=ParameterFunctionType(dens_expr), variability=VariabilityEnum.TEMPORAL)
dens_ctxt.uom = 'kg m-3'
dens_ctxt_id = self.dataset_management.create_parameter_context(name=dens_ctxt.name, parameter_context=dens_ctxt.dump(), parameter_type='pfunc', units=dens_ctxt.uom)
self.add_context_to_cleanup(dens_ctxt_id)
ids = [t_ctxt_id, lat_ctxt_id, lon_ctxt_id, temp_ctxt_id, cond_ctxt_id, press_ctxt_id, tempL1_ctxt_id, condL1_ctxt_id, presL1_ctxt_id, sal_ctxt_id, dens_ctxt_id]
contexts = [t_ctxt, lat_ctxt, lon_ctxt, temp_ctxt, cond_ctxt, press_ctxt, tempL1_ctxt, condL1_ctxt, presL1_ctxt, sal_ctxt, dens_ctxt]
context_ids = [ids[i] for i,ctxt in enumerate(contexts) if ctxt.name in filter_values]
pdict_name = '_'.join([ctxt.name for ctxt in contexts if ctxt.name in filter_values])
try:
self.pdicts[pdict_name]
return self.pdicts[pdict_name]
except KeyError:
pdict_id = self.dataset_management.create_parameter_dictionary(pdict_name, parameter_context_ids=context_ids, temporal_context='time')
self.addCleanup(self.dataset_management.delete_parameter_dictionary, pdict_id)
self.pdicts[pdict_name] = pdict_id
return pdict_id
class TestResourceRegistryAttachments(IonIntegrationTestCase):
def setUp(self):
# Start container
#print 'instantiating container'
self._start_container()
#container = Container()
#print 'starting container'
#container.start()
#print 'started container'
self.container.start_rel_from_url('res/deploy/r2deploy.yml')
self.RR = ResourceRegistryServiceClient(node=self.container.node)
print 'started services'
def test_resource_registry_blob_sanity(self):
resource_id, _ = self.RR.create(IonObject(RT.Resource, name="foo"))
MY_CONTENT = "the quick brown fox etc etc etc"
#save
att_id = self.RR.create_attachment(resource_id, IonObject(RT.Attachment,
name="test.txt",
content=MY_CONTENT,
content_type="text/plain",
keywords=["test1", "test2"],
attachment_type=AttachmentType.BLOB))
#load
attachment = self.RR.read_attachment(att_id, include_content=True)
self.assertEqual("test.txt", attachment.name)
self.assertEqual("text/plain", attachment.content_type)
self.assertIn("test1", attachment.keywords)
self.assertIn("test2", attachment.keywords)
#content has changed; it's base64-encoded from what we put in
self.assertEqual(MY_CONTENT, attachment.content)
obj = self.RR.read(resource_id)
self.assertEqual(obj.name, "foo")
obj.name = "TheDudeAbides"
obj = self.RR.update(obj)
obj = self.RR.read(resource_id)
self.assertEqual(obj.name, "TheDudeAbides")
att = self.RR.find_attachments(resource_id)
self.assertNotEqual(att, None)
actor_identity_obj = IonObject("ActorIdentity", name="name")
actor_identity_obj_id, actor_identity_obj_rev = self.RR.create(actor_identity_obj)
user_info_obj = IonObject("UserInfo", name="name")
user_info_obj_id, user_info_obj_rev = self.RR.create(user_info_obj)
assoc_id, assoc_rev = self.RR.create_association(actor_identity_obj_id, PRED.hasInfo, user_info_obj_id)
self.assertNotEqual(assoc_id, None)
find_assoc = self.RR.find_associations(actor_identity_obj_id, PRED.hasInfo, user_info_obj_id)
self.assertTrue(find_assoc[0]._id == assoc_id)
subj = self.RR.find_subjects(RT.ActorIdentity, PRED.hasInfo, user_info_obj_id, True)
res_obj1 = self.RR.read_object(actor_identity_obj_id, PRED.hasInfo, RT.UserInfo)
self.assertEquals(res_obj1._id, user_info_obj_id)
self.RR.delete_association(assoc_id)
self.RR.delete_attachment(att_id)
self.RR.delete(resource_id)
class TestResourceRegistry(IonIntegrationTestCase):
def setUp(self):
# Start container
self._start_container()
self.container.start_rel_from_url('res/deploy/r2deploy.yml')
# Now create client to bank service
self.resource_registry_service = ResourceRegistryServiceClient()
@unittest.skip('Represents a bug in storage/retrieval')
def test_tuple_in_dict(self):
# create a resource with a tuple saved in a dict
transform_obj = IonObject(RT.Transform)
transform_obj.configuration = {}
transform_obj.configuration["tuple"] = ('STRING', )
transform_id, _ = self.resource_registry_service.create(transform_obj)
# read the resource back
returned_transform_obj = self.resource_registry_service.read(
transform_id)
self.assertEqual(transform_obj.configuration["tuple"],
returned_transform_obj.configuration["tuple"])
def test_basics(self):
# Sequence all the tests so that we can save numerous system start and stops
self._do_test_crud()
self._do_test_read_mult()
self._do_test_lifecycle()
self._do_test_attach()
self._do_test_association()
self._do_test_find_resources()
self._do_test_find_objects_mult()
def _do_test_crud(self):
# Some quick registry tests
# Can't call new with fields that aren't defined in the object's schema
with self.assertRaises(TypeError) as cm:
IonObject("UserInfo", name="name", foo="bar")
self.assertTrue(cm.exception.message ==
"__init__() got an unexpected keyword argument 'foo'")
# Can't call new with fields that aren't defined in the object's schema
with self.assertRaises(TypeError) as cm:
IonObject("UserInfo", {"name": "name", "foo": "bar"})
self.assertTrue(cm.exception.message ==
"__init__() got an unexpected keyword argument 'foo'")
# Can't call new with fields that aren't defined in the object's schema
with self.assertRaises(TypeError) as cm:
IonObject("UserInfo", {"name": "name"}, foo="bar")
self.assertTrue(cm.exception.message ==
"__init__() got an unexpected keyword argument 'foo'")
# Instantiate an object
obj = IonObject("UserInfo", name="name")
# Can set attributes that aren't in the object's schema
with self.assertRaises(AttributeError) as cm:
setattr(obj, "foo", "bar")
self.assertTrue(
cm.exception.message == "'UserInfo' object has no attribute 'foo'")
# Cam't call update with object that hasn't been persisted
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.update(obj)
self.assertTrue(
cm.exception.message.startswith(
"Object does not have required '_id' or '_rev' attribute"))
# Persist object and read it back
obj_id, obj_rev = self.resource_registry_service.create(obj)
read_obj = self.resource_registry_service.read(obj_id)
# Cannot create object with _id and _rev fields pre-set
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.create(read_obj)
# Update object
read_obj.name = "John Doe"
self.resource_registry_service.update(read_obj)
# Update should fail with revision mismatch
with self.assertRaises(Conflict) as cm:
self.resource_registry_service.update(read_obj)
# Re-read and update object
read_obj = self.resource_registry_service.read(obj_id)
self.resource_registry_service.update(read_obj)
# Delete object
self.resource_registry_service.delete(obj_id)
# Make sure read, update and delete report error
with self.assertRaises(NotFound) as cm:
self.resource_registry_service.read(obj_id)
self.assertTrue(cm.exception.message.startswith("Object with id"))
with self.assertRaises(NotFound) as cm:
self.resource_registry_service.update(read_obj)
self.assertTrue(cm.exception.message.startswith("Object with id"))
with self.assertRaises(NotFound) as cm:
self.resource_registry_service.delete(obj_id)
self.assertTrue(cm.exception.message.startswith("Object with id"))
# Owner creation tests
user = IonObject("ActorIdentity", name='user')
uid, _ = self.resource_registry_service.create(user)
inst = IonObject("InstrumentDevice", name='instrument')
iid, _ = self.resource_registry_service.create(
inst, headers={'ion-actor-id': str(uid)})
ids, _ = self.resource_registry_service.find_objects(iid,
PRED.hasOwner,
RT.ActorIdentity,
id_only=True)
self.assertEquals(len(ids), 1)
assoc = self.resource_registry_service.read(ids[0])
self.resource_registry_service.delete(iid)
with self.assertRaises(NotFound) as ex:
assoc = self.resource_registry_service.read(iid)
def _do_test_read_mult(self):
test_resource1_id, _ = self.resource_registry_service.create(
Resource(name='test1'))
test_resource2_id, _ = self.resource_registry_service.create(
Resource(name='test2'))
res_list = [test_resource1_id, test_resource2_id]
objects = self.resource_registry_service.read_mult(res_list)
for o in objects:
self.assertIsInstance(o, Resource)
self.assertTrue(o._id in res_list)
def _do_test_lifecycle(self):
# Lifecycle tests
att = IonObject("InstrumentDevice", name='mine', description='desc')
rid, rev = self.resource_registry_service.create(att)
att1 = self.resource_registry_service.read(rid)
self.assertEquals(att1.name, att.name)
self.assertEquals(att1.lcstate, LCS.DRAFT)
self.assertEquals(att1.availability, AS.PRIVATE)
new_state = self.resource_registry_service.execute_lifecycle_transition(
rid, LCE.PLAN)
self.assertEquals(new_state, lcstate(LCS.PLANNED, AS.PRIVATE))
att2 = self.resource_registry_service.read(rid)
self.assertEquals(att2.lcstate, LCS.PLANNED)
self.assertEquals(att2.availability, AS.PRIVATE)
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.execute_lifecycle_transition(
rid, LCE.UNANNOUNCE)
self.assertTrue(
"type=InstrumentDevice, lcstate=PLANNED_PRIVATE has no transition for event unannounce"
in cm.exception.message)
new_state = self.resource_registry_service.execute_lifecycle_transition(
rid, LCE.DEVELOP)
self.assertEquals(new_state, lcstate(LCS.DEVELOPED, AS.PRIVATE))
with self.assertRaises(BadRequest):
self.resource_registry_service.execute_lifecycle_transition(
resource_id=rid, transition_event='NONE##')
self.resource_registry_service.set_lifecycle_state(
rid, lcstate(LCS.INTEGRATED, AS.PRIVATE))
att1 = self.resource_registry_service.read(rid)
self.assertEquals(att1.lcstate, LCS.INTEGRATED)
self.assertEquals(att1.availability, AS.PRIVATE)
def _do_test_attach(self):
binary = "\x89PNG\r\n\x1a\n\x00\x00\x00\rIHDR\x00\x00\x00\x10\x00\x00\x00\x10\x08\x03\x00\x00\x00(-\x0fS\x00\x00\x00\x03sBIT\x08\x08\x08\xdb\xe1O\xe0\x00\x00\x00~PLTEf3\x00\xfc\xf7\xe0\xee\xcc\x00\xd3\xa0\x00\xcc\x99\x00\xec\xcdc\x9fl\x00\xdd\xb2\x00\xff\xff\xff|I\x00\xf9\xdb\x00\xdd\xb5\x19\xd9\xad\x10\xb6\x83\x00\xf8\xd6\x00\xf2\xc5\x00\xd8\xab\x00n;\x00\xff\xcc\x00\xd6\xa4\t\xeb\xb8\x00\x83Q\x00\xadz\x00\xff\xde\x00\xff\xd6\x00\xd6\xa3\x00\xdf\xaf\x00\xde\xad\x10\xbc\x8e\x00\xec\xbe\x00\xec\xd4d\xff\xe3\x00tA\x00\xf6\xc4\x00\xf6\xce\x00\xa5u\x00\xde\xa5\x00\xf7\xbd\x00\xd6\xad\x08\xdd\xaf\x19\x8cR\x00\xea\xb7\x00\xee\xe9\xdf\xc5\x00\x00\x00\tpHYs\x00\x00\n\xf0\x00\x00\n\xf0\x01B\xac4\x98\x00\x00\x00\x1ctEXtSoftware\x00Adobe Fireworks CS4\x06\xb2\xd3\xa0\x00\x00\x00\x15tEXtCreation Time\x0029/4/09Oq\xfdE\x00\x00\x00\xadIDAT\x18\x95M\x8f\x8d\x0e\x820\x0c\x84;ZdC~f\x07\xb2\x11D\x86\x89\xe8\xfb\xbf\xa0+h\xe2\x97\\\xd2^\x93\xb6\x07:1\x9f)q\x9e\xa5\x06\xad\xd5\x13\x8b\xac,\xb3\x02\x9d\x12C\xa1-\xef;M\x08*\x19\xce\x0e?\x1a\xeb4\xcc\xd4\x0c\x831\x87V\xca\xa1\x1a\xd3\x08@\xe4\xbd\xb7\x15P;\xc8\xd4{\x91\xbf\x11\x90\xffg\xdd\x8di\xfa\xb6\x0bs2Z\xff\xe8yg2\xdc\x11T\x96\xc7\x05\xa5\xef\x96+\xa7\xa59E\xae\xe1\x84cm^1\xa6\xb3\xda\x85\xc8\xd8/\x17se\x0eN^'\x8c\xc7\x8e\x88\xa8\xf6p\x8e\xc2;\xc6.\xd0\x11.\x91o\x12\x7f\xcb\xa5\xfe\x00\x89]\x10:\xf5\x00\x0e\xbf\x00\x00\x00\x00IEND\xaeB`\x82"
# Owner creation tests
instrument = IonObject("InstrumentDevice", name='instrument')
iid, _ = self.resource_registry_service.create(instrument)
att = Attachment(content=binary, attachment_type=AttachmentType.BLOB)
aid1 = self.resource_registry_service.create_attachment(iid, att)
att1 = self.resource_registry_service.read_attachment(
aid1, include_content=True)
self.assertEquals(binary, att1.content)
import base64
att = Attachment(content=base64.encodestring(binary),
attachment_type=AttachmentType.ASCII)
aid2 = self.resource_registry_service.create_attachment(iid, att)
att1 = self.resource_registry_service.read_attachment(
aid2, include_content=True)
self.assertEquals(binary, base64.decodestring(att1.content))
att_ids = self.resource_registry_service.find_attachments(iid,
id_only=True)
self.assertEquals(att_ids, [aid1, aid2])
att_ids = self.resource_registry_service.find_attachments(
iid, id_only=True, descending=True)
self.assertEquals(att_ids, [aid2, aid1])
att_ids = self.resource_registry_service.find_attachments(
iid, id_only=True, descending=True, limit=1)
self.assertEquals(att_ids, [aid2])
atts = self.resource_registry_service.find_attachments(
iid, id_only=False, include_content=True, limit=1)
self.assertEquals(atts[0].content, binary)
self.resource_registry_service.delete_attachment(aid1)
att_ids = self.resource_registry_service.find_attachments(iid,
id_only=True)
self.assertEquals(att_ids, [aid2])
self.resource_registry_service.delete_attachment(aid2)
att_ids = self.resource_registry_service.find_attachments(iid,
id_only=True)
self.assertEquals(att_ids, [])
def _do_test_association(self):
# Instantiate ActorIdentity object
actor_identity_obj = IonObject("ActorIdentity", name="name")
actor_identity_obj_id, actor_identity_obj_rev = self.resource_registry_service.create(
actor_identity_obj)
read_actor_identity_obj = self.resource_registry_service.read(
actor_identity_obj_id)
# Instantiate UserInfo object
user_info_obj = IonObject("UserInfo", name="name")
user_info_obj_id, user_info_obj_rev = self.resource_registry_service.create(
user_info_obj)
read_user_info_obj = self.resource_registry_service.read(
user_info_obj_id)
# Test create failures
with self.assertRaises(AttributeError) as cm:
self.resource_registry_service.create_association(
actor_identity_obj_id, PRED.bogus, user_info_obj_id)
self.assertTrue(cm.exception.message == "bogus")
# Predicate not provided
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.create_association(
actor_identity_obj_id, None, user_info_obj_id)
self.assertTrue(
cm.exception.message == "Association must have all elements set")
# Subject id or object not provided
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.create_association(
None, PRED.hasInfo, user_info_obj_id)
self.assertTrue(
cm.exception.message == "Association must have all elements set")
# Object id or object not provided
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.create_association(
actor_identity_obj_id, PRED.hasInfo, None)
self.assertTrue(
cm.exception.message == "Association must have all elements set")
# Bad subject id
with self.assertRaises(NotFound) as cm:
self.resource_registry_service.create_association(
"bogus", PRED.hasInfo, user_info_obj_id)
self.assertTrue(
cm.exception.message == "Object with id bogus does not exist.")
# Bad object id
with self.assertRaises(NotFound) as cm:
self.resource_registry_service.create_association(
actor_identity_obj_id, PRED.hasInfo, "bogus")
self.assertTrue(
cm.exception.message == "Object with id bogus does not exist.")
# _id missing from subject
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.create_association(
actor_identity_obj, PRED.hasInfo, user_info_obj_id)
self.assertTrue(cm.exception.message.startswith("Subject id"))
# _id missing from object
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.create_association(
actor_identity_obj_id, PRED.hasInfo, user_info_obj)
self.assertTrue(cm.exception.message.startswith("Object id"))
# Wrong subject type
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.create_association(
user_info_obj_id, PRED.hasInfo, user_info_obj_id)
self.assertTrue(cm.exception.message ==
"Illegal subject type UserInfo for predicate hasInfo")
# Wrong object type
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.create_association(
actor_identity_obj_id, PRED.hasInfo, actor_identity_obj_id)
self.assertTrue(
cm.exception.message ==
"Illegal object type ActorIdentity for predicate hasInfo")
# Create two different association types between the same subject and predicate
assoc_id1, assoc_rev1 = self.resource_registry_service.create_association(
actor_identity_obj_id, PRED.hasInfo, user_info_obj_id)
# Read object, subject
res_obj1 = self.resource_registry_service.read_object(
actor_identity_obj_id, PRED.hasInfo, RT.UserInfo)
self.assertEquals(res_obj1._id, user_info_obj_id)
res_obj1 = self.resource_registry_service.read_object(
actor_identity_obj_id, PRED.hasInfo, RT.UserInfo, id_only=True)
self.assertEquals(res_obj1, user_info_obj_id)
res_obj2 = self.resource_registry_service.read_subject(
RT.ActorIdentity, PRED.hasInfo, user_info_obj_id)
self.assertEquals(res_obj2._id, actor_identity_obj_id)
res_obj2 = self.resource_registry_service.read_subject(
RT.ActorIdentity, PRED.hasInfo, user_info_obj_id, id_only=True)
self.assertEquals(res_obj2, actor_identity_obj_id)
# Search for associations (good cases)
ret1 = self.resource_registry_service.find_associations(
actor_identity_obj_id, PRED.hasInfo, user_info_obj_id)
ret2 = self.resource_registry_service.find_associations(
actor_identity_obj_id, PRED.hasInfo)
ret3 = self.resource_registry_service.find_associations(
None, PRED.hasInfo)
self.assertTrue(len(ret1) == len(ret2) == len(ret3))
self.assertTrue(ret1[0]._id == ret2[0]._id == ret3[0]._id)
ret1 = self.resource_registry_service.find_associations(
actor_identity_obj_id, PRED.hasInfo, user_info_obj_id, None, False)
ret2 = self.resource_registry_service.find_associations(
actor_identity_obj_id, PRED.hasInfo, id_only=False)
ret3 = self.resource_registry_service.find_associations(
predicate=PRED.hasInfo, id_only=False)
self.assertTrue(ret1 == ret2 == ret3)
# Search for associations (good cases)
ret1 = self.resource_registry_service.find_associations(
read_actor_identity_obj, PRED.hasInfo, read_user_info_obj)
ret2 = self.resource_registry_service.find_associations(
read_actor_identity_obj, PRED.hasInfo)
ret3 = self.resource_registry_service.find_associations(
None, PRED.hasInfo)
self.assertTrue(len(ret1) == len(ret2) == len(ret3))
self.assertTrue(ret1[0]._id == ret2[0]._id == ret3[0]._id)
ret1 = self.resource_registry_service.find_associations(
actor_identity_obj_id, PRED.hasInfo, read_user_info_obj, None,
True)
ret2 = self.resource_registry_service.find_associations(
actor_identity_obj_id, PRED.hasInfo, id_only=True)
ret3 = self.resource_registry_service.find_associations(
predicate=PRED.hasInfo, id_only=True)
self.assertTrue(ret1 == ret2 == ret3)
# Search for associations (bad cases)
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.find_associations(None, None, None)
self.assertIn("Illegal parameters", cm.exception.message)
# Find subjects (good cases)
subj_ret1 = self.resource_registry_service.find_subjects(
RT.ActorIdentity, PRED.hasInfo, user_info_obj_id, True)
subj_ret2 = self.resource_registry_service.find_subjects(
RT.ActorIdentity, PRED.hasInfo, read_user_info_obj, True)
self.assertTrue(len(subj_ret1) == len(subj_ret2))
self.assertTrue(subj_ret1[0] == subj_ret2[0])
self.assertTrue(subj_ret1[1][0]._id == subj_ret2[1][0]._id)
subj_ret3 = self.resource_registry_service.find_subjects(
None, PRED.hasInfo, user_info_obj_id, True)
subj_ret4 = self.resource_registry_service.find_subjects(
None, None, read_user_info_obj, True)
self.assertTrue(len(subj_ret3) == len(subj_ret4))
self.assertTrue(subj_ret3[0] == subj_ret4[0])
self.assertTrue(subj_ret3[1][0]._id == subj_ret4[1][0]._id)
subj_ret5 = self.resource_registry_service.find_subjects(
None, PRED.hasInfo, user_info_obj_id, False)
subj_ret6 = self.resource_registry_service.find_subjects(
None, None, read_user_info_obj, False)
self.assertTrue(len(subj_ret5) == len(subj_ret6))
self.assertTrue(subj_ret5[0][0]._id == subj_ret6[0][0]._id)
self.assertTrue(subj_ret5[1][0]._id == subj_ret6[1][0]._id)
# Find subjects (bad cases)
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.find_subjects(None, None, None)
self.assertTrue(cm.exception.message == "Must provide object")
with self.assertRaises(AttributeError) as cm:
self.resource_registry_service.find_subjects(
RT.UserCredentials, PRED.bogus, user_info_obj_id, True)
self.assertTrue(cm.exception.message == "bogus")
ret = self.resource_registry_service.find_subjects(
RT.UserInfo, PRED.hasCredentials, user_info_obj_id, True)
self.assertTrue(len(ret[0]) == 0)
ret = self.resource_registry_service.find_subjects(
RT.UserCredentials, PRED.hasInfo, user_info_obj_id, True)
self.assertTrue(len(ret[0]) == 0)
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.find_subjects(
RT.UserCredentials, PRED.hasInfo, user_info_obj, True)
self.assertTrue(
cm.exception.message == "Object id not available in object")
# Find objects (good cases)
subj_ret1 = self.resource_registry_service.find_objects(
actor_identity_obj_id, PRED.hasInfo, RT.UserInfo, True)
subj_ret2 = self.resource_registry_service.find_objects(
read_actor_identity_obj, PRED.hasInfo, RT.UserInfo, True)
self.assertTrue(len(subj_ret1) == len(subj_ret2))
self.assertTrue(subj_ret1[0] == subj_ret2[0])
self.assertTrue(subj_ret1[1][0]._id == subj_ret2[1][0]._id)
subj_ret3 = self.resource_registry_service.find_objects(
actor_identity_obj_id, PRED.hasInfo, None, True)
subj_ret4 = self.resource_registry_service.find_objects(
actor_identity_obj_id, None, None, True)
self.assertTrue(len(subj_ret3) == len(subj_ret4))
self.assertTrue(subj_ret3[0] == subj_ret4[0])
self.assertTrue(subj_ret3[1][0]._id == subj_ret4[1][0]._id)
subj_ret5 = self.resource_registry_service.find_objects(
actor_identity_obj_id, PRED.hasInfo, None, False)
subj_ret6 = self.resource_registry_service.find_objects(
read_actor_identity_obj, None, None, False)
self.assertTrue(len(subj_ret5) == len(subj_ret6))
self.assertTrue(subj_ret5[0][0]._id == subj_ret6[0][0]._id)
self.assertTrue(subj_ret5[1][0]._id == subj_ret6[1][0]._id)
# Find objects (bad cases)
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.find_objects(None, None, None)
self.assertTrue(cm.exception.message == "Must provide subject")
with self.assertRaises(AttributeError) as cm:
self.resource_registry_service.find_objects(
actor_identity_obj_id, PRED.bogus, RT.UserCredentials, True)
self.assertTrue(cm.exception.message == "bogus")
ret = self.resource_registry_service.find_objects(
actor_identity_obj_id, PRED.hasCredentials, RT.ActorIdentity, True)
self.assertTrue(len(ret[0]) == 0)
ret = self.resource_registry_service.find_objects(
actor_identity_obj_id, PRED.hasInfo, RT.UserCredentials, True)
self.assertTrue(len(ret[0]) == 0)
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.find_objects(
actor_identity_obj, PRED.hasInfo, RT.UserInfo, True)
self.assertTrue(
cm.exception.message == "Object id not available in subject")
# Get association (bad cases)
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.get_association(None, None, None)
self.assertIn("Illegal parameters", cm.exception.message)
assoc = self.resource_registry_service.get_association(
actor_identity_obj_id, PRED.hasInfo, user_info_obj_id)
self.assertTrue(assoc._id == assoc_id1)
# Delete (bad cases)
with self.assertRaises(NotFound) as cm:
self.resource_registry_service.delete_association("bogus")
self.assertTrue(
cm.exception.message == "Object with id bogus does not exist.")
# Delete other association
self.resource_registry_service.delete_association(assoc_id1)
# Delete resources
self.resource_registry_service.delete(actor_identity_obj_id)
self.resource_registry_service.delete(user_info_obj_id)
def _do_test_find_resources(self):
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.find_resources(
RT.UserInfo, LCS.DRAFT, "name", False)
self.assertTrue(
cm.exception.message == "find by name does not support lcstate")
ret = self.resource_registry_service.find_resources(
RT.UserInfo, None, "name", False)
self.assertEquals(len(ret[0]), 0)
# Instantiate an object
obj = IonObject("InstrumentAgentInstance", name="name")
# Persist object and read it back
obj_id, obj_rev = self.resource_registry_service.create(obj)
read_obj = self.resource_registry_service.read(obj_id)
ret = self.resource_registry_service.find_resources(
RT.InstrumentAgentInstance, None, "name", False)
self.assertEquals(len(ret[0]), 1)
self.assertEquals(ret[0][0]._id, read_obj._id)
ret = self.resource_registry_service.find_resources(
RT.InstrumentAgentInstance, LCS.DEPLOYED, None, False)
self.assertEquals(len(ret[0]), 1)
self.assertEquals(ret[0][0]._id, read_obj._id)
def _do_test_find_objects_mult(self):
dp = DataProcess()
transform = Transform()
pd = ProcessDefinition()
dp_id, _ = self.resource_registry_service.create(dp)
transform_id, _ = self.resource_registry_service.create(transform)
pd_id, _ = self.resource_registry_service.create(pd)
self.resource_registry_service.create_association(
subject=dp_id, object=transform_id, predicate=PRED.hasTransform)
self.resource_registry_service.create_association(
subject=transform_id,
object=pd_id,
predicate=PRED.hasProcessDefinition)
results, _ = self.resource_registry_service.find_objects_mult(
subjects=[dp_id], id_only=True)
self.assertTrue(results == [transform_id])
results, _ = self.resource_registry_service.find_objects_mult(
subjects=[dp_id, transform_id], id_only=True)
results.sort()
correct = [transform_id, pd_id]
correct.sort()
self.assertTrue(results == correct)
@attr('EXT')
def test_get_resource_extension(self):
#Testing multiple instrument owners
subject1 = "/DC=org/DC=cilogon/C=US/O=ProtectNetwork/CN=Roger Unwin A254"
actor_identity_obj1 = IonObject(RT.ActorIdentity, {"name": subject1})
actor_id1, _ = self.resource_registry_service.create(
actor_identity_obj1)
user_info_obj1 = IonObject(RT.UserInfo, {"name": "Foo"})
user_info_id1, _ = self.resource_registry_service.create(
user_info_obj1)
self.resource_registry_service.create_association(
actor_id1, PRED.hasInfo, user_info_id1)
subject2 = "/DC=org/DC=cilogon/C=US/O=ProtectNetwork/CN=Bob Cumbers A256"
actor_identity_obj2 = IonObject(RT.ActorIdentity, {"name": subject2})
actor_id2, _ = self.resource_registry_service.create(
actor_identity_obj2)
user_info_obj2 = IonObject(RT.UserInfo, {"name": "Foo2"})
user_info_id2, _ = self.resource_registry_service.create(
user_info_obj2)
self.resource_registry_service.create_association(
actor_id2, PRED.hasInfo, user_info_id2)
test_obj = IonObject(RT.InformationResource, {"name": "TestResource"})
test_obj_id, _ = self.resource_registry_service.create(test_obj)
self.resource_registry_service.create_association(
test_obj_id, PRED.hasOwner, actor_id1)
self.resource_registry_service.create_association(
test_obj_id, PRED.hasOwner, actor_id2)
extended_resource = self.resource_registry_service.get_resource_extension(
test_obj_id, OT.ExtendedInformationResource)
self.assertEqual(test_obj_id, extended_resource._id)
self.assertEqual(len(extended_resource.owners), 2)
extended_resource_list = self.resource_registry_service.get_resource_extension(
str([user_info_id1, user_info_id2]),
OT.ExtendedInformationResource)
self.assertEqual(len(extended_resource_list), 2)
optional_args = {'user_id': user_info_id1}
extended_resource = self.resource_registry_service.get_resource_extension(
test_obj_id,
OT.TestExtendedInformationResource,
optional_args=optional_args)
self.assertEqual(test_obj_id, extended_resource._id)
self.assertEqual(len(extended_resource.owners), 2)
self.assertEqual(extended_resource.user_id, user_info_id1)
@attr('PREP')
def test_prepare_resource_support(self):
prepare_data = self.resource_registry_service.prepare_resource_support(
resource_type=RT.StreamDefinition)
self.assertEqual(prepare_data.create_request.service_name,
"resource_registry")
self.assertEqual(prepare_data.create_request.service_operation,
"create")
self.assertEqual(prepare_data.create_request.request_parameters,
{"object": "$(object)"})
self.assertEqual(prepare_data.update_request.service_name,
"resource_registry")
self.assertEqual(prepare_data.update_request.service_operation,
"update")
self.assertEqual(prepare_data.update_request.request_parameters,
{"object": "$(object)"})
res_id, _ = self.resource_registry_service.create(
prepare_data.resource)
prepare_data = self.resource_registry_service.prepare_resource_support(
resource_type=RT.StreamDefinition, resource_id=res_id)
prepare_data.resource.name = "test_stream_def"
prepare_data.resource.stream_type = "test_type"
stream_def_id, _ = self.resource_registry_service.update(
prepare_data.resource)
#def ion_object_encoder(obj):
# return obj.__dict__
#print simplejson.dumps(prepare_data, default=ion_object_encoder, indent=2)
stream_def = self.resource_registry_service.read(stream_def_id)
self.assertEqual(stream_def.name, prepare_data.resource.name)
self.assertEqual(stream_def.stream_type,
prepare_data.resource.stream_type)
class TestResourceRegistry(IonIntegrationTestCase):
def setUp(self):
# Start container
self._start_container()
self.container.start_rel_from_url('res/deploy/r2deploy.yml')
# Now create client to bank service
self.resource_registry_service = ResourceRegistryServiceClient()
@unittest.skip('Represents a bug in storage/retrieval')
def test_tuple_in_dict(self):
# create a resource with a tuple saved in a dict
transform_obj = IonObject(RT.Transform)
transform_obj.configuration = {}
transform_obj.configuration["tuple"] = ('STRING',)
transform_id, _ = self.resource_registry_service.create(transform_obj)
# read the resource back
returned_transform_obj = self.resource_registry_service.read(transform_id)
self.assertEqual(transform_obj.configuration["tuple"], returned_transform_obj.configuration["tuple"])
def test_basics(self):
# Sequence all the tests so that we can save numerous system start and stops
self._do_test_crud()
self._do_test_read_mult()
self._do_test_lifecycle()
self._do_test_attach()
self._do_test_association()
self._do_test_find_resources()
self._do_test_find_objects_mult()
def _do_test_crud(self):
# Some quick registry tests
# Can't call new with fields that aren't defined in the object's schema
with self.assertRaises(TypeError) as cm:
IonObject("UserInfo", name="name", foo="bar")
self.assertTrue(cm.exception.message == "__init__() got an unexpected keyword argument 'foo'")
# Can't call new with fields that aren't defined in the object's schema
with self.assertRaises(TypeError) as cm:
IonObject("UserInfo", {"name": "name", "foo": "bar"})
self.assertTrue(cm.exception.message == "__init__() got an unexpected keyword argument 'foo'")
# Can't call new with fields that aren't defined in the object's schema
with self.assertRaises(TypeError) as cm:
IonObject("UserInfo", {"name": "name"}, foo="bar")
self.assertTrue(cm.exception.message == "__init__() got an unexpected keyword argument 'foo'")
# Instantiate an object
obj = IonObject("UserInfo", name="name")
# Can set attributes that aren't in the object's schema
with self.assertRaises(AttributeError) as cm:
setattr(obj, "foo", "bar")
self.assertTrue(cm.exception.message == "'UserInfo' object has no attribute 'foo'")
# Cam't call update with object that hasn't been persisted
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.update(obj)
self.assertTrue(cm.exception.message.startswith("Object does not have required '_id' or '_rev' attribute"))
# Persist object and read it back
obj_id, obj_rev = self.resource_registry_service.create(obj)
read_obj = self.resource_registry_service.read(obj_id)
# Cannot create object with _id and _rev fields pre-set
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.create(read_obj)
# Update object
read_obj.name = "John Doe"
self.resource_registry_service.update(read_obj)
# Update should fail with revision mismatch
with self.assertRaises(Conflict) as cm:
self.resource_registry_service.update(read_obj)
# Re-read and update object
read_obj = self.resource_registry_service.read(obj_id)
self.resource_registry_service.update(read_obj)
# Delete object
self.resource_registry_service.delete(obj_id)
# Make sure read, update and delete report error
with self.assertRaises(NotFound) as cm:
self.resource_registry_service.read(obj_id)
self.assertTrue(cm.exception.message.startswith("Object with id"))
with self.assertRaises(NotFound) as cm:
self.resource_registry_service.update(read_obj)
self.assertTrue(cm.exception.message.startswith("Object with id"))
with self.assertRaises(NotFound) as cm:
self.resource_registry_service.delete(obj_id)
self.assertTrue(cm.exception.message.startswith("Object with id"))
# Owner creation tests
user = IonObject("ActorIdentity", name='user')
uid,_ = self.resource_registry_service.create(user)
inst = IonObject("InstrumentDevice", name='instrument')
iid,_ = self.resource_registry_service.create(inst, headers={'ion-actor-id':str(uid)})
ids,_ = self.resource_registry_service.find_objects(iid, PRED.hasOwner, RT.ActorIdentity, id_only=True)
self.assertEquals(len(ids), 1)
assoc = self.resource_registry_service.read(ids[0])
self.resource_registry_service.delete(iid)
with self.assertRaises(NotFound) as ex:
assoc = self.resource_registry_service.read(iid)
def _do_test_read_mult(self):
test_resource1_id,_ = self.resource_registry_service.create(Resource(name='test1'))
test_resource2_id,_ = self.resource_registry_service.create(Resource(name='test2'))
res_list = [test_resource1_id, test_resource2_id]
objects = self.resource_registry_service.read_mult(res_list)
for o in objects:
self.assertIsInstance(o,Resource)
self.assertTrue(o._id in res_list)
def _do_test_lifecycle(self):
# Lifecycle tests
att = IonObject("InstrumentDevice", name='mine', description='desc')
rid,rev = self.resource_registry_service.create(att)
att1 = self.resource_registry_service.read(rid)
self.assertEquals(att1.name, att.name)
self.assertEquals(att1.lcstate, LCS.DRAFT)
self.assertEquals(att1.availability, AS.PRIVATE)
new_state = self.resource_registry_service.execute_lifecycle_transition(rid, LCE.PLAN)
self.assertEquals(new_state, lcstate(LCS.PLANNED, AS.PRIVATE))
att2 = self.resource_registry_service.read(rid)
self.assertEquals(att2.lcstate, LCS.PLANNED)
self.assertEquals(att2.availability, AS.PRIVATE)
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.execute_lifecycle_transition(rid, LCE.UNANNOUNCE)
self.assertTrue("type=InstrumentDevice, lcstate=PLANNED_PRIVATE has no transition for event unannounce" in cm.exception.message)
new_state = self.resource_registry_service.execute_lifecycle_transition(rid, LCE.DEVELOP)
self.assertEquals(new_state, lcstate(LCS.DEVELOPED, AS.PRIVATE))
with self.assertRaises(BadRequest):
self.resource_registry_service.execute_lifecycle_transition(
resource_id=rid, transition_event='NONE##')
self.resource_registry_service.set_lifecycle_state(rid, lcstate(LCS.INTEGRATED, AS.PRIVATE))
att1 = self.resource_registry_service.read(rid)
self.assertEquals(att1.lcstate, LCS.INTEGRATED)
self.assertEquals(att1.availability, AS.PRIVATE)
def _do_test_attach(self):
binary = "\x89PNG\r\n\x1a\n\x00\x00\x00\rIHDR\x00\x00\x00\x10\x00\x00\x00\x10\x08\x03\x00\x00\x00(-\x0fS\x00\x00\x00\x03sBIT\x08\x08\x08\xdb\xe1O\xe0\x00\x00\x00~PLTEf3\x00\xfc\xf7\xe0\xee\xcc\x00\xd3\xa0\x00\xcc\x99\x00\xec\xcdc\x9fl\x00\xdd\xb2\x00\xff\xff\xff|I\x00\xf9\xdb\x00\xdd\xb5\x19\xd9\xad\x10\xb6\x83\x00\xf8\xd6\x00\xf2\xc5\x00\xd8\xab\x00n;\x00\xff\xcc\x00\xd6\xa4\t\xeb\xb8\x00\x83Q\x00\xadz\x00\xff\xde\x00\xff\xd6\x00\xd6\xa3\x00\xdf\xaf\x00\xde\xad\x10\xbc\x8e\x00\xec\xbe\x00\xec\xd4d\xff\xe3\x00tA\x00\xf6\xc4\x00\xf6\xce\x00\xa5u\x00\xde\xa5\x00\xf7\xbd\x00\xd6\xad\x08\xdd\xaf\x19\x8cR\x00\xea\xb7\x00\xee\xe9\xdf\xc5\x00\x00\x00\tpHYs\x00\x00\n\xf0\x00\x00\n\xf0\x01B\xac4\x98\x00\x00\x00\x1ctEXtSoftware\x00Adobe Fireworks CS4\x06\xb2\xd3\xa0\x00\x00\x00\x15tEXtCreation Time\x0029/4/09Oq\xfdE\x00\x00\x00\xadIDAT\x18\x95M\x8f\x8d\x0e\x820\x0c\x84;ZdC~f\x07\xb2\x11D\x86\x89\xe8\xfb\xbf\xa0+h\xe2\x97\\\xd2^\x93\xb6\x07:1\x9f)q\x9e\xa5\x06\xad\xd5\x13\x8b\xac,\xb3\x02\x9d\x12C\xa1-\xef;M\x08*\x19\xce\x0e?\x1a\xeb4\xcc\xd4\x0c\x831\x87V\xca\xa1\x1a\xd3\x08@\xe4\xbd\xb7\x15P;\xc8\xd4{\x91\xbf\x11\x90\xffg\xdd\x8di\xfa\xb6\x0bs2Z\xff\xe8yg2\xdc\x11T\x96\xc7\x05\xa5\xef\x96+\xa7\xa59E\xae\xe1\x84cm^1\xa6\xb3\xda\x85\xc8\xd8/\x17se\x0eN^'\x8c\xc7\x8e\x88\xa8\xf6p\x8e\xc2;\xc6.\xd0\x11.\x91o\x12\x7f\xcb\xa5\xfe\x00\x89]\x10:\xf5\x00\x0e\xbf\x00\x00\x00\x00IEND\xaeB`\x82"
# Owner creation tests
instrument = IonObject("InstrumentDevice", name='instrument')
iid,_ = self.resource_registry_service.create(instrument)
att = Attachment(content=binary, attachment_type=AttachmentType.BLOB)
aid1 = self.resource_registry_service.create_attachment(iid, att)
att1 = self.resource_registry_service.read_attachment(aid1, include_content=True)
self.assertEquals(binary, att1.content)
import base64
att = Attachment(content=base64.encodestring(binary), attachment_type=AttachmentType.ASCII)
aid2 = self.resource_registry_service.create_attachment(iid, att)
att1 = self.resource_registry_service.read_attachment(aid2, include_content=True)
self.assertEquals(binary, base64.decodestring(att1.content))
att_ids = self.resource_registry_service.find_attachments(iid, id_only=True)
self.assertEquals(att_ids, [aid1, aid2])
att_ids = self.resource_registry_service.find_attachments(iid, id_only=True, descending=True)
self.assertEquals(att_ids, [aid2, aid1])
att_ids = self.resource_registry_service.find_attachments(iid, id_only=True, descending=True, limit=1)
self.assertEquals(att_ids, [aid2])
atts = self.resource_registry_service.find_attachments(iid, id_only=False, include_content=True, limit=1)
self.assertEquals(atts[0].content, binary)
self.resource_registry_service.delete_attachment(aid1)
att_ids = self.resource_registry_service.find_attachments(iid, id_only=True)
self.assertEquals(att_ids, [aid2])
self.resource_registry_service.delete_attachment(aid2)
att_ids = self.resource_registry_service.find_attachments(iid, id_only=True)
self.assertEquals(att_ids, [])
def _do_test_association(self):
# Instantiate ActorIdentity object
actor_identity_obj = IonObject("ActorIdentity", name="name")
actor_identity_obj_id, actor_identity_obj_rev = self.resource_registry_service.create(actor_identity_obj)
read_actor_identity_obj = self.resource_registry_service.read(actor_identity_obj_id)
# Instantiate UserInfo object
user_info_obj = IonObject("UserInfo", name="name")
user_info_obj_id, user_info_obj_rev = self.resource_registry_service.create(user_info_obj)
read_user_info_obj = self.resource_registry_service.read(user_info_obj_id)
# Test create failures
with self.assertRaises(AttributeError) as cm:
self.resource_registry_service.create_association(actor_identity_obj_id, PRED.bogus, user_info_obj_id)
self.assertTrue(cm.exception.message == "bogus")
# Predicate not provided
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.create_association(actor_identity_obj_id, None, user_info_obj_id)
self.assertTrue(cm.exception.message == "Association must have all elements set")
# Subject id or object not provided
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.create_association(None, PRED.hasInfo, user_info_obj_id)
self.assertTrue(cm.exception.message == "Association must have all elements set")
# Object id or object not provided
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.create_association(actor_identity_obj_id, PRED.hasInfo, None)
self.assertTrue(cm.exception.message == "Association must have all elements set")
# Bad subject id
with self.assertRaises(NotFound) as cm:
self.resource_registry_service.create_association("bogus", PRED.hasInfo, user_info_obj_id)
self.assertTrue(cm.exception.message == "Object with id bogus does not exist.")
# Bad object id
with self.assertRaises(NotFound) as cm:
self.resource_registry_service.create_association(actor_identity_obj_id, PRED.hasInfo, "bogus")
self.assertTrue(cm.exception.message == "Object with id bogus does not exist.")
# _id missing from subject
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.create_association(actor_identity_obj, PRED.hasInfo, user_info_obj_id)
self.assertTrue(cm.exception.message.startswith("Subject id"))
# _id missing from object
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.create_association(actor_identity_obj_id, PRED.hasInfo, user_info_obj)
self.assertTrue(cm.exception.message.startswith("Object id"))
# Wrong subject type
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.create_association(user_info_obj_id, PRED.hasInfo, user_info_obj_id)
self.assertTrue(cm.exception.message == "Illegal subject type UserInfo for predicate hasInfo")
# Wrong object type
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.create_association(actor_identity_obj_id, PRED.hasInfo, actor_identity_obj_id)
self.assertTrue(cm.exception.message == "Illegal object type ActorIdentity for predicate hasInfo")
# Create two different association types between the same subject and predicate
assoc_id1, assoc_rev1 = self.resource_registry_service.create_association(actor_identity_obj_id, PRED.hasInfo, user_info_obj_id)
# Read object, subject
res_obj1 = self.resource_registry_service.read_object(actor_identity_obj_id, PRED.hasInfo, RT.UserInfo)
self.assertEquals(res_obj1._id, user_info_obj_id)
res_obj1 = self.resource_registry_service.read_object(actor_identity_obj_id, PRED.hasInfo, RT.UserInfo, id_only=True)
self.assertEquals(res_obj1, user_info_obj_id)
res_obj2 = self.resource_registry_service.read_subject(RT.ActorIdentity, PRED.hasInfo, user_info_obj_id)
self.assertEquals(res_obj2._id, actor_identity_obj_id)
res_obj2 = self.resource_registry_service.read_subject(RT.ActorIdentity, PRED.hasInfo, user_info_obj_id, id_only=True)
self.assertEquals(res_obj2, actor_identity_obj_id)
# Search for associations (good cases)
ret1 = self.resource_registry_service.find_associations(actor_identity_obj_id, PRED.hasInfo, user_info_obj_id)
ret2 = self.resource_registry_service.find_associations(actor_identity_obj_id, PRED.hasInfo)
ret3 = self.resource_registry_service.find_associations(None, PRED.hasInfo)
self.assertTrue(len(ret1) == len(ret2) == len(ret3))
self.assertTrue(ret1[0]._id == ret2[0]._id == ret3[0]._id)
ret1 = self.resource_registry_service.find_associations(actor_identity_obj_id, PRED.hasInfo, user_info_obj_id, None, False)
ret2 = self.resource_registry_service.find_associations(actor_identity_obj_id, PRED.hasInfo, id_only=False)
ret3 = self.resource_registry_service.find_associations(predicate=PRED.hasInfo, id_only=False)
self.assertTrue(ret1 == ret2 == ret3)
# Search for associations (good cases)
ret1 = self.resource_registry_service.find_associations(read_actor_identity_obj, PRED.hasInfo, read_user_info_obj)
ret2 = self.resource_registry_service.find_associations(read_actor_identity_obj, PRED.hasInfo)
ret3 = self.resource_registry_service.find_associations(None, PRED.hasInfo)
self.assertTrue(len(ret1) == len(ret2) == len(ret3))
self.assertTrue(ret1[0]._id == ret2[0]._id == ret3[0]._id)
ret1 = self.resource_registry_service.find_associations(actor_identity_obj_id, PRED.hasInfo, read_user_info_obj, None, True)
ret2 = self.resource_registry_service.find_associations(actor_identity_obj_id, PRED.hasInfo, id_only=True)
ret3 = self.resource_registry_service.find_associations(predicate=PRED.hasInfo, id_only=True)
self.assertTrue(ret1 == ret2 == ret3)
# Search for associations (bad cases)
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.find_associations(None, None, None)
self.assertIn("Illegal parameters", cm.exception.message)
# Find subjects (good cases)
subj_ret1 = self.resource_registry_service.find_subjects(RT.ActorIdentity, PRED.hasInfo, user_info_obj_id, True)
subj_ret2 = self.resource_registry_service.find_subjects(RT.ActorIdentity, PRED.hasInfo, read_user_info_obj, True)
self.assertTrue(len(subj_ret1) == len(subj_ret2))
self.assertTrue(subj_ret1[0] == subj_ret2[0])
self.assertTrue(subj_ret1[1][0]._id == subj_ret2[1][0]._id)
subj_ret3 = self.resource_registry_service.find_subjects(None, PRED.hasInfo, user_info_obj_id, True)
subj_ret4 = self.resource_registry_service.find_subjects(None, None, read_user_info_obj, True)
self.assertTrue(len(subj_ret3) == len(subj_ret4))
self.assertTrue(subj_ret3[0] == subj_ret4[0])
self.assertTrue(subj_ret3[1][0]._id == subj_ret4[1][0]._id)
subj_ret5 = self.resource_registry_service.find_subjects(None, PRED.hasInfo, user_info_obj_id, False)
subj_ret6 = self.resource_registry_service.find_subjects(None, None, read_user_info_obj, False)
self.assertTrue(len(subj_ret5) == len(subj_ret6))
self.assertTrue(subj_ret5[0][0]._id == subj_ret6[0][0]._id)
self.assertTrue(subj_ret5[1][0]._id == subj_ret6[1][0]._id)
# Find subjects (bad cases)
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.find_subjects(None, None, None)
self.assertTrue(cm.exception.message == "Must provide object")
with self.assertRaises(AttributeError) as cm:
self.resource_registry_service.find_subjects(RT.UserCredentials, PRED.bogus, user_info_obj_id, True)
self.assertTrue(cm.exception.message == "bogus")
ret = self.resource_registry_service.find_subjects(RT.UserInfo, PRED.hasCredentials, user_info_obj_id, True)
self.assertTrue(len(ret[0]) == 0)
ret = self.resource_registry_service.find_subjects(RT.UserCredentials, PRED.hasInfo, user_info_obj_id, True)
self.assertTrue(len(ret[0]) == 0)
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.find_subjects(RT.UserCredentials, PRED.hasInfo, user_info_obj, True)
self.assertTrue(cm.exception.message == "Object id not available in object")
# Find objects (good cases)
subj_ret1 = self.resource_registry_service.find_objects(actor_identity_obj_id, PRED.hasInfo, RT.UserInfo, True)
subj_ret2 = self.resource_registry_service.find_objects(read_actor_identity_obj, PRED.hasInfo, RT.UserInfo, True)
self.assertTrue(len(subj_ret1) == len(subj_ret2))
self.assertTrue(subj_ret1[0] == subj_ret2[0])
self.assertTrue(subj_ret1[1][0]._id == subj_ret2[1][0]._id)
subj_ret3 = self.resource_registry_service.find_objects(actor_identity_obj_id, PRED.hasInfo, None, True)
subj_ret4 = self.resource_registry_service.find_objects(actor_identity_obj_id, None, None, True)
self.assertTrue(len(subj_ret3) == len(subj_ret4))
self.assertTrue(subj_ret3[0] == subj_ret4[0])
self.assertTrue(subj_ret3[1][0]._id == subj_ret4[1][0]._id)
subj_ret5 = self.resource_registry_service.find_objects(actor_identity_obj_id, PRED.hasInfo, None, False)
subj_ret6 = self.resource_registry_service.find_objects(read_actor_identity_obj, None, None, False)
self.assertTrue(len(subj_ret5) == len(subj_ret6))
self.assertTrue(subj_ret5[0][0]._id == subj_ret6[0][0]._id)
self.assertTrue(subj_ret5[1][0]._id == subj_ret6[1][0]._id)
# Find objects (bad cases)
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.find_objects(None, None, None)
self.assertTrue(cm.exception.message == "Must provide subject")
with self.assertRaises(AttributeError) as cm:
self.resource_registry_service.find_objects(actor_identity_obj_id, PRED.bogus, RT.UserCredentials, True)
self.assertTrue(cm.exception.message == "bogus")
ret = self.resource_registry_service.find_objects(actor_identity_obj_id, PRED.hasCredentials, RT.ActorIdentity, True)
self.assertTrue(len(ret[0]) == 0)
ret = self.resource_registry_service.find_objects(actor_identity_obj_id, PRED.hasInfo, RT.UserCredentials, True)
self.assertTrue(len(ret[0]) == 0)
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.find_objects(actor_identity_obj, PRED.hasInfo, RT.UserInfo, True)
self.assertTrue(cm.exception.message == "Object id not available in subject")
# Get association (bad cases)
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.get_association(None, None, None)
self.assertIn("Illegal parameters", cm.exception.message)
assoc = self.resource_registry_service.get_association(actor_identity_obj_id, PRED.hasInfo, user_info_obj_id)
self.assertTrue(assoc._id == assoc_id1)
# Delete (bad cases)
with self.assertRaises(NotFound) as cm:
self.resource_registry_service.delete_association("bogus")
self.assertTrue(cm.exception.message == "Object with id bogus does not exist.")
# Delete other association
self.resource_registry_service.delete_association(assoc_id1)
# Delete resources
self.resource_registry_service.delete(actor_identity_obj_id)
self.resource_registry_service.delete(user_info_obj_id)
def _do_test_find_resources(self):
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.find_resources(RT.UserInfo, LCS.DRAFT, "name", False)
self.assertTrue(cm.exception.message == "find by name does not support lcstate")
ret = self.resource_registry_service.find_resources(RT.UserInfo, None, "name", False)
self.assertEquals(len(ret[0]), 0)
# Instantiate an object
obj = IonObject("InstrumentAgentInstance", name="name")
# Persist object and read it back
obj_id, obj_rev = self.resource_registry_service.create(obj)
read_obj = self.resource_registry_service.read(obj_id)
ret = self.resource_registry_service.find_resources(RT.InstrumentAgentInstance, None, "name", False)
self.assertEquals(len(ret[0]), 1)
self.assertEquals(ret[0][0]._id, read_obj._id)
ret = self.resource_registry_service.find_resources(RT.InstrumentAgentInstance, LCS.DEPLOYED, None, False)
self.assertEquals(len(ret[0]), 1)
self.assertEquals(ret[0][0]._id, read_obj._id)
def _do_test_find_objects_mult(self):
dp = DataProcess()
transform = Transform()
pd = ProcessDefinition()
dp_id, _ = self.resource_registry_service.create(dp)
transform_id, _ = self.resource_registry_service.create(transform)
pd_id, _ = self.resource_registry_service.create(pd)
self.resource_registry_service.create_association(subject=dp_id, object=transform_id, predicate=PRED.hasTransform)
self.resource_registry_service.create_association(subject=transform_id, object=pd_id, predicate=PRED.hasProcessDefinition)
results, _ = self.resource_registry_service.find_objects_mult(subjects=[dp_id],id_only=True)
self.assertTrue(results == [transform_id])
results, _ = self.resource_registry_service.find_objects_mult(subjects=[dp_id, transform_id], id_only=True)
results.sort()
correct = [transform_id, pd_id]
correct.sort()
self.assertTrue(results == correct)
@attr('EXT')
def test_get_resource_extension(self):
#Testing multiple instrument owners
subject1 = "/DC=org/DC=cilogon/C=US/O=ProtectNetwork/CN=Roger Unwin A254"
actor_identity_obj1 = IonObject(RT.ActorIdentity, {"name": subject1})
actor_id1,_ = self.resource_registry_service.create(actor_identity_obj1)
user_info_obj1 = IonObject(RT.UserInfo, {"name": "Foo"})
user_info_id1,_ = self.resource_registry_service.create(user_info_obj1)
self.resource_registry_service.create_association(actor_id1, PRED.hasInfo, user_info_id1)
subject2 = "/DC=org/DC=cilogon/C=US/O=ProtectNetwork/CN=Bob Cumbers A256"
actor_identity_obj2 = IonObject(RT.ActorIdentity, {"name": subject2})
actor_id2,_ = self.resource_registry_service.create(actor_identity_obj2)
user_info_obj2 = IonObject(RT.UserInfo, {"name": "Foo2"})
user_info_id2,_ = self.resource_registry_service.create(user_info_obj2)
self.resource_registry_service.create_association(actor_id2, PRED.hasInfo, user_info_id2)
test_obj = IonObject(RT.InformationResource, {"name": "TestResource"})
test_obj_id,_ = self.resource_registry_service.create(test_obj)
self.resource_registry_service.create_association(test_obj_id, PRED.hasOwner, actor_id1)
self.resource_registry_service.create_association(test_obj_id, PRED.hasOwner, actor_id2)
extended_resource = self.resource_registry_service.get_resource_extension(test_obj_id, OT.ExtendedInformationResource )
self.assertEqual(test_obj_id,extended_resource._id)
self.assertEqual(len(extended_resource.owners),2)
extended_resource_list = self.resource_registry_service.get_resource_extension(str([user_info_id1,user_info_id2]), OT.ExtendedInformationResource)
self.assertEqual(len(extended_resource_list), 2)
optional_args = {'user_id': user_info_id1}
extended_resource = self.resource_registry_service.get_resource_extension(test_obj_id, OT.TestExtendedInformationResource, optional_args=optional_args )
self.assertEqual(test_obj_id,extended_resource._id)
self.assertEqual(len(extended_resource.owners),2)
self.assertEqual(extended_resource.user_id, user_info_id1)
class TestResourceRegistry(IonIntegrationTestCase):
# service_dependencies = [('resource_registry', {'resource_registry': {'persistent': True, 'force_clean': True}})]
def setUp(self):
# Start container
self._start_container()
# Establish endpoint with container
container_client = ContainerAgentClient(node=self.container.node, name=self.container.name)
container_client.start_rel_from_url('res/deploy/r2coi.yml')
# Now create client to bank service
self.resource_registry_service = ResourceRegistryServiceClient(node=self.container.node)
def test_crud(self):
# Some quick registry tests
# Can't call new with fields that aren't defined in the object's schema
with self.assertRaises(TypeError) as cm:
IonObject("UserInfo", name="name", foo="bar")
self.assertTrue(cm.exception.message == "__init__() got an unexpected keyword argument 'foo'")
# Can't call new with fields that aren't defined in the object's schema
with self.assertRaises(TypeError) as cm:
IonObject("UserInfo", {"name": "name", "foo": "bar"})
self.assertTrue(cm.exception.message == "__init__() got an unexpected keyword argument 'foo'")
# Can't call new with fields that aren't defined in the object's schema
with self.assertRaises(TypeError) as cm:
IonObject("UserInfo", {"name": "name"}, foo="bar")
self.assertTrue(cm.exception.message == "__init__() got an unexpected keyword argument 'foo'")
# Instantiate an object
obj = IonObject("UserInfo", name="name")
# Can set attributes that aren't in the object's schema
with self.assertRaises(AttributeError) as cm:
setattr(obj, "foo", "bar")
self.assertTrue(cm.exception.message == "'UserInfo' object has no attribute 'foo'")
# Cam't call update with object that hasn't been persisted
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.update(obj)
self.assertTrue(cm.exception.message.startswith("Object does not have required '_id' or '_rev' attribute"))
# Persist object and read it back
obj_id, obj_rev = self.resource_registry_service.create(obj)
read_obj = self.resource_registry_service.read(obj_id)
# Cannot create object with _id and _rev fields pre-set
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.create(read_obj)
self.assertTrue(cm.exception.message.startswith("Doc must not have '_id'"))
# Update object
read_obj.name = "John Doe"
self.resource_registry_service.update(read_obj)
# Update should fail with revision mismatch
with self.assertRaises(Conflict) as cm:
self.resource_registry_service.update(read_obj)
self.assertTrue(cm.exception.message.startswith("Object not based on most current version"))
# Re-read and update object
read_obj = self.resource_registry_service.read(obj_id)
self.resource_registry_service.update(read_obj)
# Delete object
self.resource_registry_service.delete(obj_id)
# Make sure read, update and delete report error
with self.assertRaises(NotFound) as cm:
self.resource_registry_service.read(obj_id)
self.assertTrue(cm.exception.message.startswith("Object with id"))
with self.assertRaises(NotFound) as cm:
self.resource_registry_service.update(read_obj)
self.assertTrue(cm.exception.message.startswith("Object with id"))
with self.assertRaises(NotFound) as cm:
self.resource_registry_service.delete(obj_id)
self.assertTrue(cm.exception.message.startswith("Object with id"))
def test_lifecycle(self):
att = IonObject("Attachment", name='mine', description='desc')
rid,rev = self.resource_registry_service.create(att)
att1 = self.resource_registry_service.read(rid)
self.assertEquals(att1.name, att.name)
self.assertEquals(att1.lcstate, LCS.DRAFT)
new_state = self.resource_registry_service.execute_lifecycle_transition(rid, LCE.register)
self.assertEquals(new_state, LCS.PLANNED)
att2 = self.resource_registry_service.read(rid)
self.assertEquals(att2.lcstate, LCS.PLANNED)
with self.assertRaises(Inconsistent) as cm:
self.resource_registry_service.execute_lifecycle_transition(rid, LCE.register)
self.assertTrue("type=Attachment, lcstate=PLANNED has no transition for event register" in cm.exception.message)
new_state = self.resource_registry_service.execute_lifecycle_transition(rid, LCE.develop, LCS.PLANNED)
self.assertEquals(new_state, LCS.DEVELOPED)
self.assertRaises(iex.Inconsistent, self.resource_registry_service.execute_lifecycle_transition,
resource_id=rid, transition_event=LCE.develop, current_lcstate=LCS.PLANNED)
def test_association(self):
# Instantiate UserIdentity object
user_identity_obj = IonObject("UserIdentity", name="name")
user_identity_obj_id, user_identity_obj_rev = self.resource_registry_service.create(user_identity_obj)
read_user_identity_obj = self.resource_registry_service.read(user_identity_obj_id)
# Instantiate UserInfo object
user_info_obj = IonObject("UserInfo", name="name")
user_info_obj_id, user_info_obj_rev = self.resource_registry_service.create(user_info_obj)
read_user_info_obj = self.resource_registry_service.read(user_info_obj_id)
# Test create failures
with self.assertRaises(AttributeError) as cm:
self.resource_registry_service.create_association(user_identity_obj_id, PRED.bogus, user_info_obj_id)
self.assertTrue(cm.exception.message == "bogus")
# Predicate not provided
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.create_association(user_identity_obj_id, None, user_info_obj_id)
self.assertTrue(cm.exception.message == "Association must have all elements set")
# Bad association type
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.create_association(user_identity_obj_id, PRED.hasInfo, user_info_obj_id, 'bogustype')
self.assertTrue(cm.exception.message == "Unsupported assoc_type: bogustype")
# Subject id or object not provided
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.create_association(None, PRED.hasInfo, user_info_obj_id)
self.assertTrue(cm.exception.message == "Association must have all elements set")
# Object id or object not provided
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.create_association(user_identity_obj_id, PRED.hasInfo, None)
self.assertTrue(cm.exception.message == "Association must have all elements set")
# Bad subject id
with self.assertRaises(NotFound) as cm:
self.resource_registry_service.create_association("bogus", PRED.hasInfo, user_info_obj_id)
self.assertTrue(cm.exception.message == "Object with id bogus does not exist.")
# Bad object id
with self.assertRaises(NotFound) as cm:
self.resource_registry_service.create_association(user_identity_obj_id, PRED.hasInfo, "bogus")
self.assertTrue(cm.exception.message == "Object with id bogus does not exist.")
# _id missing from subject
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.create_association(user_identity_obj, PRED.hasInfo, user_info_obj_id)
self.assertTrue(cm.exception.message == "Subject id or rev not available")
# _id missing from object
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.create_association(user_identity_obj_id, PRED.hasInfo, user_info_obj)
self.assertTrue(cm.exception.message == "Object id or rev not available")
# Wrong subject type
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.create_association(user_info_obj_id, PRED.hasInfo, user_info_obj_id)
self.assertTrue(cm.exception.message == "Illegal subject type UserInfo for predicate hasInfo")
# Wrong object type
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.create_association(user_identity_obj_id, PRED.hasInfo, user_identity_obj_id)
self.assertTrue(cm.exception.message == "Illegal object type UserIdentity for predicate hasInfo")
# Create duplicate associations
assoc_id1, assoc_rev1 = self.resource_registry_service.create_association(user_identity_obj_id, PRED.hasInfo, user_info_obj_id)
assoc_id2, assoc_rev2 = self.resource_registry_service.create_association(user_identity_obj_id, PRED.hasInfo, user_info_obj_id, "H2R")
# Search for associations (good cases)
ret1 = self.resource_registry_service.find_associations(user_identity_obj_id, PRED.hasInfo, user_info_obj_id)
ret2 = self.resource_registry_service.find_associations(user_identity_obj_id, PRED.hasInfo)
ret3 = self.resource_registry_service.find_associations(None, PRED.hasInfo)
self.assertTrue(len(ret1) == len(ret2) == len(ret3))
self.assertTrue(ret1[0]._id == ret2[0]._id == ret3[0]._id)
ret1 = self.resource_registry_service.find_associations(user_identity_obj_id, PRED.hasInfo, user_info_obj_id, True)
ret2 = self.resource_registry_service.find_associations(user_identity_obj_id, PRED.hasInfo, id_only=True)
ret3 = self.resource_registry_service.find_associations(predicate=PRED.hasInfo, id_only=True)
self.assertTrue(ret1 == ret2 == ret3)
# Search for associations (good cases)
ret1 = self.resource_registry_service.find_associations(read_user_identity_obj, PRED.hasInfo, read_user_info_obj)
ret2 = self.resource_registry_service.find_associations(read_user_identity_obj, PRED.hasInfo)
ret3 = self.resource_registry_service.find_associations(None, PRED.hasInfo)
self.assertTrue(len(ret1) == len(ret2) == len(ret3))
self.assertTrue(ret1[0]._id == ret2[0]._id == ret3[0]._id)
ret1 = self.resource_registry_service.find_associations(user_identity_obj_id, PRED.hasInfo, read_user_info_obj, True)
ret2 = self.resource_registry_service.find_associations(user_identity_obj_id, PRED.hasInfo, id_only=True)
ret3 = self.resource_registry_service.find_associations(predicate=PRED.hasInfo, id_only=True)
self.assertTrue(ret1 == ret2 == ret3)
# Search for associations (bad cases)
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.find_associations(None, None, None)
self.assertTrue(cm.exception.message == "Illegal parameters")
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.find_associations(user_identity_obj_id, None, None)
self.assertTrue(cm.exception.message == "Illegal parameters")
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.find_associations(None, None, user_info_obj_id)
self.assertTrue(cm.exception.message == "Illegal parameters")
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.find_associations(user_identity_obj, None, user_info_obj_id)
self.assertTrue(cm.exception.message == "Object id not available in subject")
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.find_associations(user_identity_obj_id, None, user_info_obj)
self.assertTrue(cm.exception.message == "Object id not available in object")
# Find subjects (good cases)
subj_ret1 = self.resource_registry_service.find_subjects(RT.UserIdentity, PRED.hasInfo, user_info_obj_id, True)
subj_ret2 = self.resource_registry_service.find_subjects(RT.UserIdentity, PRED.hasInfo, read_user_info_obj, True)
self.assertTrue(len(subj_ret1) == len(subj_ret2))
self.assertTrue(subj_ret1[0] == subj_ret2[0])
self.assertTrue(subj_ret1[1][0]._id == subj_ret2[1][0]._id)
subj_ret3 = self.resource_registry_service.find_subjects(None, PRED.hasInfo, user_info_obj_id, True)
subj_ret4 = self.resource_registry_service.find_subjects(None, None, read_user_info_obj, True)
self.assertTrue(len(subj_ret3) == len(subj_ret4))
self.assertTrue(subj_ret3[0] == subj_ret4[0])
self.assertTrue(subj_ret3[1][0]._id == subj_ret4[1][0]._id)
subj_ret5 = self.resource_registry_service.find_subjects(None, PRED.hasInfo, user_info_obj_id, False)
subj_ret6 = self.resource_registry_service.find_subjects(None, None, read_user_info_obj, False)
self.assertTrue(len(subj_ret5) == len(subj_ret6))
self.assertTrue(subj_ret5[0][0]._id == subj_ret6[0][0]._id)
self.assertTrue(subj_ret5[1][0]._id == subj_ret6[1][0]._id)
# Find subjects (bad cases)
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.find_subjects(None, None, None)
self.assertTrue(cm.exception.message == "Must provide object")
with self.assertRaises(AttributeError) as cm:
self.resource_registry_service.find_subjects(RT.UserCredentials, PRED.bogus, user_info_obj_id, True)
self.assertTrue(cm.exception.message == "bogus")
ret = self.resource_registry_service.find_subjects(RT.UserInfo, PRED.hasCredentials, user_info_obj_id, True)
self.assertTrue(len(ret[0]) == 0)
ret = self.resource_registry_service.find_subjects(RT.UserCredentials, PRED.hasInfo, user_info_obj_id, True)
self.assertTrue(len(ret[0]) == 0)
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.find_subjects(RT.UserCredentials, PRED.hasInfo, user_info_obj, True)
self.assertTrue(cm.exception.message == "Object id not available in object")
# Find objects (good cases)
subj_ret1 = self.resource_registry_service.find_objects(user_identity_obj_id, PRED.hasInfo, RT.UserInfo, True)
subj_ret2 = self.resource_registry_service.find_objects(read_user_identity_obj, PRED.hasInfo, RT.UserInfo, True)
self.assertTrue(len(subj_ret1) == len(subj_ret2))
self.assertTrue(subj_ret1[0] == subj_ret2[0])
self.assertTrue(subj_ret1[1][0]._id == subj_ret2[1][0]._id)
subj_ret3 = self.resource_registry_service.find_objects(user_identity_obj_id, PRED.hasInfo, None, True)
subj_ret4 = self.resource_registry_service.find_objects(user_identity_obj_id, None, None, True)
self.assertTrue(len(subj_ret3) == len(subj_ret4))
self.assertTrue(subj_ret3[0] == subj_ret4[0])
self.assertTrue(subj_ret3[1][0]._id == subj_ret4[1][0]._id)
subj_ret5 = self.resource_registry_service.find_objects(user_identity_obj_id, PRED.hasInfo, None, False)
subj_ret6 = self.resource_registry_service.find_objects(read_user_identity_obj, None, None, False)
self.assertTrue(len(subj_ret5) == len(subj_ret6))
self.assertTrue(subj_ret5[0][0]._id == subj_ret6[0][0]._id)
self.assertTrue(subj_ret5[1][0]._id == subj_ret6[1][0]._id)
# Find objects (bad cases)
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.find_objects(None, None, None)
self.assertTrue(cm.exception.message == "Must provide subject")
with self.assertRaises(AttributeError) as cm:
self.resource_registry_service.find_objects(user_identity_obj_id, PRED.bogus, RT.UserCredentials, True)
self.assertTrue(cm.exception.message == "bogus")
ret = self.resource_registry_service.find_objects(user_identity_obj_id, PRED.hasCredentials, RT.UserIdentity, True)
self.assertTrue(len(ret[0]) == 0)
ret = self.resource_registry_service.find_objects(user_identity_obj_id, PRED.hasInfo, RT.UserCredentials, True)
self.assertTrue(len(ret[0]) == 0)
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.find_objects(user_identity_obj, PRED.hasInfo, RT.UserInfo, True)
self.assertTrue(cm.exception.message == "Object id not available in subject")
# Get association (bad cases)
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.get_association(None, None, None)
self.assertTrue(cm.exception.message == "Illegal parameters")
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.get_association(user_identity_obj_id, None, None)
self.assertTrue(cm.exception.message == "Illegal parameters")
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.get_association(None, None, user_info_obj_id)
self.assertTrue(cm.exception.message == "Illegal parameters")
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.get_association(user_identity_obj, None, user_info_obj_id)
self.assertTrue(cm.exception.message == "Object id not available in subject")
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.get_association(user_identity_obj_id, None, user_info_obj)
self.assertTrue(cm.exception.message == "Object id not available in object")
with self.assertRaises(Inconsistent) as cm:
self.resource_registry_service.get_association(user_identity_obj_id, PRED.hasInfo, user_info_obj_id)
self.assertTrue(cm.exception.message.startswith("Duplicate associations found for subject/predicate/object"))
# Delete one of the associations
self.resource_registry_service.delete_association(assoc_id1)
assoc = self.resource_registry_service.get_association(user_identity_obj_id, PRED.hasInfo, user_info_obj_id)
self.assertTrue(assoc._id == assoc_id2)
# Delete (bad cases)
with self.assertRaises(NotFound) as cm:
self.resource_registry_service.delete_association("bogus")
self.assertTrue(cm.exception.message == "Object with id bogus does not exist.")
# Delete other association
self.resource_registry_service.delete_association(assoc_id2)
# Delete resources
self.resource_registry_service.delete(user_identity_obj_id)
self.resource_registry_service.delete(user_info_obj_id)
def test_find_resources(self):
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.find_resources(RT.UserInfo, LCS.DRAFT, "name", False)
self.assertTrue(cm.exception.message == "find by name does not support lcstate")
ret = self.resource_registry_service.find_resources(RT.UserInfo, None, "name", False)
self.assertTrue(len(ret[0]) == 0)
# Instantiate an object
obj = IonObject("UserInfo", name="name")
# Persist object and read it back
obj_id, obj_rev = self.resource_registry_service.create(obj)
read_obj = self.resource_registry_service.read(obj_id)
ret = self.resource_registry_service.find_resources(RT.UserInfo, None, "name", False)
self.assertTrue(len(ret[0]) == 1)
self.assertTrue(ret[0][0]._id == read_obj._id)
ret = self.resource_registry_service.find_resources(RT.UserInfo, LCS.DRAFT, None, False)
self.assertTrue(len(ret[0]) == 1)
self.assertTrue(ret[0][0]._id == read_obj._id)
class TestWorkflowManagementIntegration(VisualizationIntegrationTestHelper):
def setUp(self):
# Start container
self._start_container()
self.container.start_rel_from_url('res/deploy/r2deploy.yml')
# Now create client to DataProductManagementService
self.rrclient = ResourceRegistryServiceClient(node=self.container.node)
self.damsclient = DataAcquisitionManagementServiceClient(node=self.container.node)
self.pubsubclient = PubsubManagementServiceClient(node=self.container.node)
self.ingestclient = IngestionManagementServiceClient(node=self.container.node)
self.imsclient = InstrumentManagementServiceClient(node=self.container.node)
self.dataproductclient = DataProductManagementServiceClient(node=self.container.node)
self.dataprocessclient = DataProcessManagementServiceClient(node=self.container.node)
self.datasetclient = DatasetManagementServiceClient(node=self.container.node)
self.workflowclient = WorkflowManagementServiceClient(node=self.container.node)
self.process_dispatcher = ProcessDispatcherServiceClient(node=self.container.node)
self.data_retriever = DataRetrieverServiceClient(node=self.container.node)
self.ctd_stream_def = SBE37_CDM_stream_definition()
@attr('LOCOINT')
@unittest.skipIf(os.getenv('CEI_LAUNCH_TEST', False),'Not integrated for CEI')
#@unittest.skip("Skipping for debugging ")
def test_SA_transform_components(self):
assertions = self.assertTrue
#The list of data product streams to monitor
data_product_stream_ids = list()
#Create the input data product
ctd_stream_id, ctd_parsed_data_product_id = self.create_ctd_input_stream_and_data_product()
data_product_stream_ids.append(ctd_stream_id)
###
### Setup the first transformation
###
# Salinity: Data Process Definition
ctd_L2_salinity_dprocdef_id = self.create_salinity_data_process_definition()
l2_salinity_all_data_process_id, ctd_l2_salinity_output_dp_id = self.create_transform_process(ctd_L2_salinity_dprocdef_id,ctd_parsed_data_product_id )
## get the stream id for the transform outputs
stream_ids, _ = self.rrclient.find_objects(ctd_l2_salinity_output_dp_id, PRED.hasStream, None, True)
assertions(len(stream_ids) > 0 )
sal_stream_id = stream_ids[0]
data_product_stream_ids.append(sal_stream_id)
###
### Setup the second transformation
###
# Salinity Doubler: Data Process Definition
salinity_doubler_dprocdef_id = self.create_salinity_doubler_data_process_definition()
salinity_double_data_process_id, salinity_doubler_output_dp_id = self.create_transform_process(salinity_doubler_dprocdef_id, ctd_l2_salinity_output_dp_id )
stream_ids, _ = self.rrclient.find_objects(salinity_doubler_output_dp_id, PRED.hasStream, None, True)
assertions(len(stream_ids) > 0 )
sal_dbl_stream_id = stream_ids[0]
data_product_stream_ids.append(sal_dbl_stream_id)
#Start the output stream listener to monitor and collect messages
results = self.start_output_stream_and_listen(ctd_stream_id, data_product_stream_ids)
#Stop the transform processes
self.dataprocessclient.deactivate_data_process(salinity_double_data_process_id)
self.dataprocessclient.deactivate_data_process(l2_salinity_all_data_process_id)
#Validate the data from each of the messages along the way
self.validate_messages(results)
@attr('LOCOINT')
@attr('SMOKE')
@unittest.skip("not working")
@unittest.skipIf(os.getenv('CEI_LAUNCH_TEST', False),'Not integrated for CEI')
#@unittest.skip("Skipping for debugging ")
def test_transform_workflow(self):
assertions = self.assertTrue
# Build the workflow definition
workflow_def_obj = IonObject(RT.WorkflowDefinition, name='Salinity_Test_Workflow',description='tests a workflow of multiple transform data processes')
workflow_data_product_name = 'TEST-Workflow_Output_Product' #Set a specific output product name
#Add a transformation process definition
ctd_L2_salinity_dprocdef_id = self.create_salinity_data_process_definition()
workflow_step_obj = IonObject('DataProcessWorkflowStep', data_process_definition_id=ctd_L2_salinity_dprocdef_id, persist_process_output_data=False) #Don't persist the intermediate data product
workflow_def_obj.workflow_steps.append(workflow_step_obj)
#Add a transformation process definition
salinity_doubler_dprocdef_id = self.create_salinity_doubler_data_process_definition()
workflow_step_obj = IonObject('DataProcessWorkflowStep', data_process_definition_id=salinity_doubler_dprocdef_id, output_data_product_name=workflow_data_product_name)
workflow_def_obj.workflow_steps.append(workflow_step_obj)
#Create it in the resource registry
workflow_def_id = self.workflowclient.create_workflow_definition(workflow_def_obj)
aids = self.rrclient.find_associations(workflow_def_id, PRED.hasDataProcessDefinition)
assertions(len(aids) == 2 )
#The list of data product streams to monitor
data_product_stream_ids = list()
#Create the input data product
ctd_stream_id, ctd_parsed_data_product_id = self.create_ctd_input_stream_and_data_product()
data_product_stream_ids.append(ctd_stream_id)
#Create and start the workflow
workflow_id, workflow_product_id = self.workflowclient.create_data_process_workflow(workflow_def_id, ctd_parsed_data_product_id, timeout=30)
workflow_output_ids,_ = self.rrclient.find_subjects(RT.Workflow, PRED.hasOutputProduct, workflow_product_id, True)
assertions(len(workflow_output_ids) == 1 )
#persist the output product
#self.dataproductclient.activate_data_product_persistence(workflow_product_id)
dataset_ids,_ = self.rrclient.find_objects(workflow_product_id, PRED.hasDataset, RT.DataSet, True)
assertions(len(dataset_ids) == 1 )
dataset_id = dataset_ids[0]
#Verify the output data product name matches what was specified in the workflow definition
workflow_product = self.rrclient.read(workflow_product_id)
assertions(workflow_product.name == workflow_data_product_name)
#Walk the associations to find the appropriate output data streams to validate the messages
workflow_dp_ids,_ = self.rrclient.find_objects(workflow_id, PRED.hasDataProduct, RT.DataProduct, True)
assertions(len(workflow_dp_ids) == 2 )
for dp_id in workflow_dp_ids:
stream_ids, _ = self.rrclient.find_objects(dp_id, PRED.hasStream, None, True)
assertions(len(stream_ids) == 1 )
data_product_stream_ids.append(stream_ids[0])
#Start the output stream listener to monitor and collect messages
results = self.start_output_stream_and_listen(ctd_stream_id, data_product_stream_ids)
#Stop the workflow processes
self.workflowclient.terminate_data_process_workflow(workflow_id, False, timeout=15) # Should test true at some point
#Make sure the Workflow object was removed
objs, _ = self.rrclient.find_resources(restype=RT.Workflow)
assertions(len(objs) == 0)
#Validate the data from each of the messages along the way
self.validate_messages(results)
#validate that the data was persisted and can be retrieved
self.validate_data_ingest_retrieve(dataset_id)
#Cleanup to make sure delete is correct.
self.workflowclient.delete_workflow_definition(workflow_def_id)
workflow_def_ids,_ = self.rrclient.find_resources(restype=RT.WorkflowDefinition)
assertions(len(workflow_def_ids) == 0 )
@attr('LOCOINT')
@unittest.skipIf(os.getenv('CEI_LAUNCH_TEST', False),'Not integrated for CEI')
#@unittest.skip("Skipping for debugging ")
def test_google_dt_transform_workflow(self):
assertions = self.assertTrue
# Build the workflow definition
workflow_def_obj = IonObject(RT.WorkflowDefinition, name='GoogleDT_Test_Workflow',description='Tests the workflow of converting stream data to Google DT')
#Add a transformation process definition
google_dt_procdef_id = self.create_google_dt_data_process_definition()
workflow_step_obj = IonObject('DataProcessWorkflowStep', data_process_definition_id=google_dt_procdef_id, persist_process_output_data=True)
workflow_def_obj.workflow_steps.append(workflow_step_obj)
#Create it in the resource registry
workflow_def_id = self.workflowclient.create_workflow_definition(workflow_def_obj)
#The list of data product streams to monitor
data_product_stream_ids = list()
#Create the input data product
ctd_stream_id, ctd_parsed_data_product_id = self.create_ctd_input_stream_and_data_product()
data_product_stream_ids.append(ctd_stream_id)
#Create and start the workflow
workflow_id, workflow_product_id = self.workflowclient.create_data_process_workflow(workflow_def_id, ctd_parsed_data_product_id, timeout=20)
workflow_output_ids,_ = self.rrclient.find_subjects(RT.Workflow, PRED.hasOutputProduct, workflow_product_id, True)
assertions(len(workflow_output_ids) == 1 )
#Walk the associations to find the appropriate output data streams to validate the messages
workflow_dp_ids,_ = self.rrclient.find_objects(workflow_id, PRED.hasDataProduct, RT.DataProduct, True)
assertions(len(workflow_dp_ids) == 1 )
for dp_id in workflow_dp_ids:
stream_ids, _ = self.rrclient.find_objects(dp_id, PRED.hasStream, None, True)
assertions(len(stream_ids) == 1 )
data_product_stream_ids.append(stream_ids[0])
#Start the output stream listener to monitor and collect messages
results = self.start_output_stream_and_listen(ctd_stream_id, data_product_stream_ids)
#Stop the workflow processes
self.workflowclient.terminate_data_process_workflow(workflow_id, False) # Should test true at some point
#Validate the data from each of the messages along the way
self.validate_google_dt_transform_results(results)
# Check to see if ingestion worked. Extract the granules from data_retrieval.
# First find the dataset associated with the output dp product
ds_ids,_ = self.rrclient.find_objects(workflow_dp_ids[len(workflow_dp_ids) - 1], PRED.hasDataset, RT.DataSet, True)
retrieve_granule = self.data_retriever.retrieve(ds_ids[0])
#Validate the data from each of the messages along the way
self.validate_google_dt_transform_results(retrieve_granule)
#Cleanup to make sure delete is correct.
self.workflowclient.delete_workflow_definition(workflow_def_id)
workflow_def_ids,_ = self.rrclient.find_resources(restype=RT.WorkflowDefinition)
assertions(len(workflow_def_ids) == 0 )
@attr('LOCOINT')
@unittest.skipIf(os.getenv('CEI_LAUNCH_TEST', False),'Not integrated for CEI')
#@unittest.skip("Skipping for debugging ")
def test_mpl_graphs_transform_workflow(self):
assertions = self.assertTrue
# Build the workflow definition
workflow_def_obj = IonObject(RT.WorkflowDefinition, name='Mpl_Graphs_Test_Workflow',description='Tests the workflow of converting stream data to Matplotlib graphs')
#Add a transformation process definition
mpl_graphs_procdef_id = self.create_mpl_graphs_data_process_definition()
workflow_step_obj = IonObject('DataProcessWorkflowStep', data_process_definition_id=mpl_graphs_procdef_id, persist_process_output_data=True)
workflow_def_obj.workflow_steps.append(workflow_step_obj)
#Create it in the resource registry
workflow_def_id = self.workflowclient.create_workflow_definition(workflow_def_obj)
#The list of data product streams to monitor
data_product_stream_ids = list()
#Create the input data product
ctd_stream_id, ctd_parsed_data_product_id = self.create_ctd_input_stream_and_data_product()
data_product_stream_ids.append(ctd_stream_id)
#Create and start the workflow
workflow_id, workflow_product_id = self.workflowclient.create_data_process_workflow(workflow_def_id, ctd_parsed_data_product_id, timeout=20)
workflow_output_ids,_ = self.rrclient.find_subjects(RT.Workflow, PRED.hasOutputProduct, workflow_product_id, True)
assertions(len(workflow_output_ids) == 1 )
#Walk the associations to find the appropriate output data streams to validate the messages
workflow_dp_ids,_ = self.rrclient.find_objects(workflow_id, PRED.hasDataProduct, RT.DataProduct, True)
assertions(len(workflow_dp_ids) == 1 )
for dp_id in workflow_dp_ids:
stream_ids, _ = self.rrclient.find_objects(dp_id, PRED.hasStream, None, True)
assertions(len(stream_ids) == 1 )
data_product_stream_ids.append(stream_ids[0])
#Start the output stream listener to monitor and collect messages
results = self.start_output_stream_and_listen(ctd_stream_id, data_product_stream_ids)
#Stop the workflow processes
self.workflowclient.terminate_data_process_workflow(workflow_id, False) # Should test true at some point
#Validate the data from each of the messages along the way
self.validate_mpl_graphs_transform_results(results)
# Check to see if ingestion worked. Extract the granules from data_retrieval.
# First find the dataset associated with the output dp product
ds_ids,_ = self.rrclient.find_objects(workflow_dp_ids[len(workflow_dp_ids) - 1], PRED.hasDataset, RT.DataSet, True)
retrieve_granule = self.data_retriever.retrieve(ds_ids[0])
#Validate the data from each of the messages along the way
self.validate_mpl_graphs_transform_results(retrieve_granule)
#Cleanup to make sure delete is correct.
self.workflowclient.delete_workflow_definition(workflow_def_id)
workflow_def_ids,_ = self.rrclient.find_resources(restype=RT.WorkflowDefinition)
assertions(len(workflow_def_ids) == 0 )
@attr('LOCOINT')
@unittest.skipIf(os.getenv('CEI_LAUNCH_TEST', False),'Not integrated for CEI')
#@unittest.skip("Skipping for debugging ")
def test_multiple_workflow_instances(self):
assertions = self.assertTrue
# Build the workflow definition
workflow_def_obj = IonObject(RT.WorkflowDefinition, name='Multiple_Test_Workflow',description='Tests the workflow of converting stream data')
#Add a transformation process definition
google_dt_procdef_id = self.create_google_dt_data_process_definition()
workflow_step_obj = IonObject('DataProcessWorkflowStep', data_process_definition_id=google_dt_procdef_id)
workflow_def_obj.workflow_steps.append(workflow_step_obj)
#Create it in the resource registry
workflow_def_id = self.workflowclient.create_workflow_definition(workflow_def_obj)
#The list of data product streams to monitor
data_product_stream_ids = list()
#Create the first input data product
ctd_stream_id1, ctd_parsed_data_product_id1 = self.create_ctd_input_stream_and_data_product('ctd_parsed1')
data_product_stream_ids.append(ctd_stream_id1)
#Create and start the first workflow
workflow_id1, workflow_product_id1 = self.workflowclient.create_data_process_workflow(workflow_def_id, ctd_parsed_data_product_id1, timeout=20)
#Create the second input data product
ctd_stream_id2, ctd_parsed_data_product_id2 = self.create_ctd_input_stream_and_data_product('ctd_parsed2')
data_product_stream_ids.append(ctd_stream_id2)
#Create and start the first workflow
workflow_id2, workflow_product_id2 = self.workflowclient.create_data_process_workflow(workflow_def_id, ctd_parsed_data_product_id2, timeout=20)
#Walk the associations to find the appropriate output data streams to validate the messages
workflow_ids,_ = self.rrclient.find_resources(restype=RT.Workflow)
assertions(len(workflow_ids) == 2 )
#Start the first input stream process
ctd_sim_pid1 = self.start_sinusoidal_input_stream_process(ctd_stream_id1)
#Start the second input stream process
ctd_sim_pid2 = self.start_simple_input_stream_process(ctd_stream_id2)
#Start the output stream listener to monitor a set number of messages being sent through the workflows
results = self.start_output_stream_and_listen(None, data_product_stream_ids, message_count_per_stream=5)
# stop the flow of messages...
self.process_dispatcher.cancel_process(ctd_sim_pid1) # kill the ctd simulator process - that is enough data
self.process_dispatcher.cancel_process(ctd_sim_pid2)
#Stop the first workflow processes
self.workflowclient.terminate_data_process_workflow(workflow_id1, False) # Should test true at some point
#Stop the second workflow processes
self.workflowclient.terminate_data_process_workflow(workflow_id2, False) # Should test true at some point
workflow_ids,_ = self.rrclient.find_resources(restype=RT.Workflow)
assertions(len(workflow_ids) == 0 )
#Cleanup to make sure delete is correct.
self.workflowclient.delete_workflow_definition(workflow_def_id)
workflow_def_ids,_ = self.rrclient.find_resources(restype=RT.WorkflowDefinition)
assertions(len(workflow_def_ids) == 0 )
aid_list = self.rrclient.find_associations(workflow_def_id, PRED.hasDataProcessDefinition)
assertions(len(aid_list) == 0 )
class TestIntDataProcessManagementServiceMultiOut(IonIntegrationTestCase):
def setUp(self):
# Start container
self._start_container()
self.container.start_rel_from_url('res/deploy/r2deploy.yml')
# Now create client to DataProductManagementService
self.rrclient = ResourceRegistryServiceClient(node=self.container.node)
self.damsclient = DataAcquisitionManagementServiceClient(node=self.container.node)
self.pubsubclient = PubsubManagementServiceClient(node=self.container.node)
self.ingestclient = IngestionManagementServiceClient(node=self.container.node)
self.imsclient = InstrumentManagementServiceClient(node=self.container.node)
self.dataproductclient = DataProductManagementServiceClient(node=self.container.node)
self.dataprocessclient = DataProcessManagementServiceClient(node=self.container.node)
self.datasetclient = DatasetManagementServiceClient(node=self.container.node)
self.dataset_management = self.datasetclient
self.process_dispatcher = ProcessDispatcherServiceClient(node=self.container.node)
def test_createDataProcess(self):
#---------------------------------------------------------------------------
# Data Process Definition
#---------------------------------------------------------------------------
dpd_obj = IonObject(RT.DataProcessDefinition,
name='ctd_L0_all',
description='transform ctd package into three separate L0 streams',
module='ion.processes.data.transforms.ctd.ctd_L0_all',
class_name='ctd_L0_all')
dprocdef_id = self.dataprocessclient.create_data_process_definition(dpd_obj)
# Make assertion on the newly registered data process definition
data_process_definition = self.rrclient.read(dprocdef_id)
self.assertEquals(data_process_definition.name, 'ctd_L0_all')
self.assertEquals(data_process_definition.description, 'transform ctd package into three separate L0 streams')
self.assertEquals(data_process_definition.module, 'ion.processes.data.transforms.ctd.ctd_L0_all')
self.assertEquals(data_process_definition.class_name, 'ctd_L0_all')
# Read the data process definition using data process management and make assertions
dprocdef_obj = self.dataprocessclient.read_data_process_definition(dprocdef_id)
self.assertEquals(dprocdef_obj.class_name,'ctd_L0_all')
self.assertEquals(dprocdef_obj.module,'ion.processes.data.transforms.ctd.ctd_L0_all')
#---------------------------------------------------------------------------
# Create an input instrument
#---------------------------------------------------------------------------
instrument_obj = IonObject(RT.InstrumentDevice, name='Inst1',description='an instrument that is creating the data product')
instrument_id, rev = self.rrclient.create(instrument_obj)
# Register the instrument so that the data producer and stream object are created
data_producer_id = self.damsclient.register_instrument(instrument_id)
# create a stream definition for the data from the ctd simulator
pdict_id = self.dataset_management.read_parameter_dictionary_by_name('ctd_parsed_param_dict', id_only=True)
ctd_stream_def_id = self.pubsubclient.create_stream_definition(name='Simulated CTD data', parameter_dictionary_id=pdict_id)
self.dataprocessclient.assign_input_stream_definition_to_data_process_definition(ctd_stream_def_id, dprocdef_id )
# Assert that the link between the stream definition and the data process definition was done
assocs = self.rrclient.find_associations(subject=dprocdef_id, predicate=PRED.hasInputStreamDefinition, object=ctd_stream_def_id, id_only=True)
self.assertIsNotNone(assocs)
#---------------------------------------------------------------------------
# Input Data Product
#---------------------------------------------------------------------------
tdom, sdom = time_series_domain()
sdom = sdom.dump()
tdom = tdom.dump()
input_dp_obj = IonObject( RT.DataProduct,
name='InputDataProduct',
description='some new dp',
temporal_domain = tdom,
spatial_domain = sdom)
input_dp_id = self.dataproductclient.create_data_product(data_product=input_dp_obj, stream_definition_id=ctd_stream_def_id, exchange_point='test')
#Make assertions on the input data product created
input_dp_obj = self.rrclient.read(input_dp_id)
self.assertEquals(input_dp_obj.name, 'InputDataProduct')
self.assertEquals(input_dp_obj.description, 'some new dp')
self.damsclient.assign_data_product(instrument_id, input_dp_id)
# Retrieve the stream via the DataProduct->Stream associations
stream_ids, _ = self.rrclient.find_objects(input_dp_id, PRED.hasStream, None, True)
self.in_stream_id = stream_ids[0]
#---------------------------------------------------------------------------
# Output Data Product
#---------------------------------------------------------------------------
outgoing_stream_conductivity_id = self.pubsubclient.create_stream_definition(name='conductivity', parameter_dictionary_id=pdict_id)
self.dataprocessclient.assign_stream_definition_to_data_process_definition(outgoing_stream_conductivity_id, dprocdef_id,binding='conductivity' )
outgoing_stream_pressure_id = self.pubsubclient.create_stream_definition(name='pressure', parameter_dictionary_id=pdict_id)
self.dataprocessclient.assign_stream_definition_to_data_process_definition(outgoing_stream_pressure_id, dprocdef_id, binding='pressure' )
outgoing_stream_temperature_id = self.pubsubclient.create_stream_definition(name='temperature', parameter_dictionary_id=pdict_id)
self.dataprocessclient.assign_stream_definition_to_data_process_definition(outgoing_stream_temperature_id, dprocdef_id, binding='temperature' )
self.output_products={}
output_dp_obj = IonObject(RT.DataProduct,
name='conductivity',
description='transform output conductivity',
temporal_domain = tdom,
spatial_domain = sdom)
output_dp_id_1 = self.dataproductclient.create_data_product(output_dp_obj, outgoing_stream_conductivity_id)
self.output_products['conductivity'] = output_dp_id_1
output_dp_obj = IonObject(RT.DataProduct,
name='pressure',
description='transform output pressure',
temporal_domain = tdom,
spatial_domain = sdom)
output_dp_id_2 = self.dataproductclient.create_data_product(output_dp_obj, outgoing_stream_pressure_id)
self.output_products['pressure'] = output_dp_id_2
output_dp_obj = IonObject(RT.DataProduct,
name='temperature',
description='transform output ',
temporal_domain = tdom,
spatial_domain = sdom)
output_dp_id_3 = self.dataproductclient.create_data_product(output_dp_obj, outgoing_stream_temperature_id)
self.output_products['temperature'] = output_dp_id_3
#---------------------------------------------------------------------------
# Create the data process
#---------------------------------------------------------------------------
def _create_data_process():
dproc_id = self.dataprocessclient.create_data_process(dprocdef_id, [input_dp_id], self.output_products)
return dproc_id
dproc_id = _create_data_process()
# Make assertions on the data process created
data_process = self.dataprocessclient.read_data_process(dproc_id)
# Assert that the data process has a process id attached
self.assertIsNotNone(data_process.process_id)
# Assert that the data process got the input data product's subscription id attached as its own input_susbcription_id attribute
self.assertIsNotNone(data_process.input_subscription_id)
output_data_product_ids = self.rrclient.find_objects(subject=dproc_id, predicate=PRED.hasOutputProduct, object_type=RT.DataProduct, id_only=True)
self.assertEquals(Set(output_data_product_ids[0]), Set([output_dp_id_1,output_dp_id_2,output_dp_id_3]))
@patch.dict(CFG, {'endpoint':{'receive':{'timeout': 60}}})
def test_createDataProcessUsingSim(self):
#-------------------------------
# Create InstrumentModel
#-------------------------------
instModel_obj = IonObject(RT.InstrumentModel, name='SBE37IMModel', description="SBE37IMModel" )
instModel_id = self.imsclient.create_instrument_model(instModel_obj)
#-------------------------------
# Create InstrumentAgent
#-------------------------------
instAgent_obj = IonObject(RT.InstrumentAgent, name='agent007', description="SBE37IMAgent", driver_uri="http://sddevrepo.oceanobservatories.org/releases/seabird_sbe37smb_ooicore-0.0.1-py2.7.egg")
instAgent_id = self.imsclient.create_instrument_agent(instAgent_obj)
self.imsclient.assign_instrument_model_to_instrument_agent(instModel_id, instAgent_id)
#-------------------------------
# Create InstrumentDevice
#-------------------------------
instDevice_obj = IonObject(RT.InstrumentDevice, name='SBE37IMDevice', description="SBE37IMDevice", serial_number="12345" )
instDevice_id = self.imsclient.create_instrument_device(instrument_device=instDevice_obj)
self.imsclient.assign_instrument_model_to_instrument_device(instModel_id, instDevice_id)
#-------------------------------
# Create InstrumentAgentInstance to hold configuration information
#-------------------------------
port_agent_config = {
'device_addr': 'sbe37-simulator.oceanobservatories.org',
'device_port': 4001,
'process_type': PortAgentProcessType.UNIX,
'binary_path': "port_agent",
'command_port': 4002,
'data_port': 4003,
'log_level': 5,
}
port_agent_config = {
'device_addr': CFG.device.sbe37.host,
'device_port': CFG.device.sbe37.port,
'process_type': PortAgentProcessType.UNIX,
'binary_path': "port_agent",
'port_agent_addr': 'localhost',
'command_port': CFG.device.sbe37.port_agent_cmd_port,
'data_port': CFG.device.sbe37.port_agent_data_port,
'log_level': 5,
'type': PortAgentType.ETHERNET
}
instAgentInstance_obj = IonObject(RT.InstrumentAgentInstance, name='SBE37IMAgentInstance', description="SBE37IMAgentInstance",
port_agent_config = port_agent_config)
instAgentInstance_id = self.imsclient.create_instrument_agent_instance(instAgentInstance_obj, instAgent_id, instDevice_id)
#-------------------------------
# Create CTD Parsed as the first data product
#-------------------------------
# create a stream definition for the data from the ctd simulator
pdict_id = self.dataset_management.read_parameter_dictionary_by_name('ctd_parsed_param_dict', id_only=True)
ctd_stream_def_id = self.pubsubclient.create_stream_definition(name='SBE32_CDM', parameter_dictionary_id=pdict_id)
# Construct temporal and spatial Coordinate Reference System objects
tdom, sdom = time_series_domain()
sdom = sdom.dump()
tdom = tdom.dump()
dp_obj = IonObject(RT.DataProduct,
name='ctd_parsed',
description='ctd stream test',
temporal_domain = tdom,
spatial_domain = sdom)
ctd_parsed_data_product = self.dataproductclient.create_data_product(dp_obj, ctd_stream_def_id)
self.damsclient.assign_data_product(input_resource_id=instDevice_id, data_product_id=ctd_parsed_data_product)
# Retrieve the id of the OUTPUT stream from the out Data Product
stream_ids, _ = self.rrclient.find_objects(ctd_parsed_data_product, PRED.hasStream, None, True)
#-------------------------------
# Create CTD Raw as the second data product
#-------------------------------
raw_stream_def_id = self.pubsubclient.create_stream_definition(name='SBE37_RAW', parameter_dictionary_id=pdict_id)
dp_obj.name = 'ctd_raw'
ctd_raw_data_product = self.dataproductclient.create_data_product(dp_obj, raw_stream_def_id)
self.damsclient.assign_data_product(input_resource_id=instDevice_id, data_product_id=ctd_raw_data_product)
# Retrieve the id of the OUTPUT stream from the out Data Product
stream_ids, _ = self.rrclient.find_objects(ctd_raw_data_product, PRED.hasStream, None, True)
#-------------------------------
# L0 Conductivity - Temperature - Pressure: Data Process Definition
#-------------------------------
dpd_obj = IonObject(RT.DataProcessDefinition,
name='ctd_L0_all',
description='transform ctd package into three separate L0 streams',
module='ion.processes.data.transforms.ctd.ctd_L0_all',
class_name='ctd_L0_all')
ctd_L0_all_dprocdef_id = self.dataprocessclient.create_data_process_definition(dpd_obj)
#-------------------------------
# L0 Conductivity - Temperature - Pressure: Output Data Products
#-------------------------------
outgoing_stream_l0_conductivity_id = self.pubsubclient.create_stream_definition(name='L0_Conductivity', parameter_dictionary_id=pdict_id)
self.dataprocessclient.assign_stream_definition_to_data_process_definition(outgoing_stream_l0_conductivity_id, ctd_L0_all_dprocdef_id, binding='conductivity' )
outgoing_stream_l0_pressure_id = self.pubsubclient.create_stream_definition(name='L0_Pressure', parameter_dictionary_id=pdict_id)
self.dataprocessclient.assign_stream_definition_to_data_process_definition(outgoing_stream_l0_pressure_id, ctd_L0_all_dprocdef_id, binding='pressure' )
outgoing_stream_l0_temperature_id = self.pubsubclient.create_stream_definition(name='L0_Temperature', parameter_dictionary_id=pdict_id)
self.dataprocessclient.assign_stream_definition_to_data_process_definition(outgoing_stream_l0_temperature_id, ctd_L0_all_dprocdef_id, binding='temperature' )
self.output_products={}
ctd_l0_conductivity_output_dp_obj = IonObject( RT.DataProduct,
name='L0_Conductivity',
description='transform output conductivity',
temporal_domain = tdom,
spatial_domain = sdom)
ctd_l0_conductivity_output_dp_id = self.dataproductclient.create_data_product(ctd_l0_conductivity_output_dp_obj,
outgoing_stream_l0_conductivity_id)
self.output_products['conductivity'] = ctd_l0_conductivity_output_dp_id
ctd_l0_pressure_output_dp_obj = IonObject(RT.DataProduct,
name='L0_Pressure',
description='transform output pressure',
temporal_domain = tdom,
spatial_domain = sdom)
ctd_l0_pressure_output_dp_id = self.dataproductclient.create_data_product(ctd_l0_pressure_output_dp_obj,
outgoing_stream_l0_pressure_id)
self.output_products['pressure'] = ctd_l0_pressure_output_dp_id
ctd_l0_temperature_output_dp_obj = IonObject(RT.DataProduct,
name='L0_Temperature',
description='transform output temperature',
temporal_domain = tdom,
spatial_domain = sdom)
ctd_l0_temperature_output_dp_id = self.dataproductclient.create_data_product(ctd_l0_temperature_output_dp_obj,
outgoing_stream_l0_temperature_id)
self.output_products['temperature'] = ctd_l0_temperature_output_dp_id
#-------------------------------
# Create listener for data process events and verify that events are received.
#-------------------------------
# todo: add this validate for Req: L4-CI-SA-RQ-367 Data processing shall notify registered data product consumers about data processing workflow life cycle events
#todo (contd) ... I believe the capability does not exist yet now. ANS And SA are not yet publishing any workflow life cycle events (Swarbhanu)
#-------------------------------
# L0 Conductivity - Temperature - Pressure: Create the data process
#-------------------------------
ctd_l0_all_data_process_id = self.dataprocessclient.create_data_process(ctd_L0_all_dprocdef_id, [ctd_parsed_data_product], self.output_products)
data_process = self.rrclient.read(ctd_l0_all_data_process_id)
process_id = data_process.process_id
self.addCleanup(self.process_dispatcher.cancel_process, process_id)
#-------------------------------
# Wait until the process launched in the create_data_process() method is actually running, before proceeding further in this test
#-------------------------------
gate = ProcessStateGate(self.process_dispatcher.read_process, process_id, ProcessStateEnum.RUNNING)
self.assertTrue(gate.await(30), "The data process (%s) did not spawn in 30 seconds" % process_id)
#-------------------------------
# Retrieve a list of all data process defintions in RR and validate that the DPD is listed
#-------------------------------
# todo: Req: L4-CI-SA-RQ-366 Data processing shall manage data topic definitions
# todo: data topics are being handled by pub sub at the level of streams
self.dataprocessclient.activate_data_process(ctd_l0_all_data_process_id)
#todo: check that activate event is received L4-CI-SA-RQ-367
#todo... (it looks like no event is being published when the data process is activated... so below, we just check for now
# todo... that the subscription is indeed activated) (Swarbhanu)
# todo: monitor process to see if it is active (sa-rq-182)
ctd_l0_all_data_process = self.rrclient.read(ctd_l0_all_data_process_id)
input_subscription_id = ctd_l0_all_data_process.input_subscription_id
subs = self.rrclient.read(input_subscription_id)
self.assertTrue(subs.activated)
# todo: This has not yet been completed by CEI, will prbly surface thru a DPMS call
self.dataprocessclient.deactivate_data_process(ctd_l0_all_data_process_id)
#-------------------------------
# Retrieve the extended resources for data process definition and for data process
#-------------------------------
extended_process_definition = self.dataprocessclient.get_data_process_definition_extension(ctd_L0_all_dprocdef_id)
self.assertEqual(1, len(extended_process_definition.data_processes))
log.debug("test_createDataProcess: extended_process_definition %s", str(extended_process_definition))
extended_process = self.dataprocessclient.get_data_process_extension(ctd_l0_all_data_process_id)
self.assertEqual(1, len(extended_process.input_data_products))
log.debug("test_createDataProcess: extended_process %s", str(extended_process))
################################ Test the removal of data processes ##################################
#-------------------------------------------------------------------
# Test the deleting of the data process
#-------------------------------------------------------------------
# Before deleting, get the input streams, output streams and the subscriptions so that they can be checked after deleting
# dp_obj_1 = self.rrclient.read(ctd_l0_all_data_process_id)
# input_subscription_id = dp_obj_1.input_subscription_id
# out_prods, _ = self.rrclient.find_objects(subject=ctd_l0_all_data_process_id, predicate=PRED.hasOutputProduct, id_only=True)
# in_prods, _ = self.rrclient.find_objects(ctd_l0_all_data_process_id, PRED.hasInputProduct, id_only=True)
# in_streams = []
# for in_prod in in_prods:
# streams, _ = self.rrclient.find_objects(in_prod, PRED.hasStream, id_only=True)
# in_streams.extend(streams)
# out_streams = []
# for out_prod in out_prods:
# streams, _ = self.rrclient.find_objects(out_prod, PRED.hasStream, id_only=True)
# out_streams.extend(streams)
# Deleting the data process
self.dataprocessclient.delete_data_process(ctd_l0_all_data_process_id)
# Check that the data process got removed. Check the lcs state. It should be retired
dp_obj = self.rrclient.read(ctd_l0_all_data_process_id)
self.assertEquals(dp_obj.lcstate, LCS.RETIRED)
# Check for process defs still attached to the data process
dpd_assn_ids = self.rrclient.find_associations(subject=ctd_l0_all_data_process_id, predicate=PRED.hasProcessDefinition, id_only=True)
self.assertEquals(len(dpd_assn_ids), 0)
# Check for output data product still attached to the data process
out_products, assocs = self.rrclient.find_objects(subject=ctd_l0_all_data_process_id, predicate=PRED.hasOutputProduct, id_only=True)
self.assertEquals(len(out_products), 0)
self.assertEquals(len(assocs), 0)
# Check for input data products still attached to the data process
inprod_associations = self.rrclient.find_associations(ctd_l0_all_data_process_id, PRED.hasInputProduct)
self.assertEquals(len(inprod_associations), 0)
# Check for input data products still attached to the data process
inprod_associations = self.rrclient.find_associations(ctd_l0_all_data_process_id, PRED.hasInputProduct)
self.assertEquals(len(inprod_associations), 0)
# Check of the data process has been deactivated
self.assertIsNone(dp_obj.input_subscription_id)
# Read the original subscription id of the data process and check that it has been deactivated
with self.assertRaises(NotFound):
self.pubsubclient.read_subscription(input_subscription_id)
#-------------------------------------------------------------------
# Delete the data process definition
#-------------------------------------------------------------------
# before deleting, get the process definition being associated to in order to be able to check later if the latter gets deleted as it should
proc_def_ids, proc_def_asocs = self.rrclient.find_objects(ctd_l0_all_data_process_id, PRED.hasProcessDefinition)
self.dataprocessclient.delete_data_process_definition(ctd_L0_all_dprocdef_id)
# check that the data process definition has been retired
dp_proc_def = self.rrclient.read(ctd_L0_all_dprocdef_id)
self.assertEquals(dp_proc_def.lcstate, LCS.RETIRED)
# Check for old associations of this data process definition
proc_defs, proc_def_asocs = self.rrclient.find_objects(ctd_L0_all_dprocdef_id, PRED.hasProcessDefinition)
self.assertEquals(len(proc_defs), 0)
# find all associations where this is the subject
_, obj_assns = self.rrclient.find_objects(subject= ctd_L0_all_dprocdef_id, id_only=True)
self.assertEquals(len(obj_assns), 0)
################################ Test the removal of data processes ##################################
# Try force delete... This should simply delete the associations and the data process object
# from the resource registry
#---------------------------------------------------------------------------------------------------------------
# Force deleting a data process
#---------------------------------------------------------------------------------------------------------------
self.dataprocessclient.force_delete_data_process(ctd_l0_all_data_process_id)
# find all associations where this is the subject
_, obj_assns = self.rrclient.find_objects(subject=ctd_l0_all_data_process_id, id_only=True)
# find all associations where this is the object
_, sbj_assns = self.rrclient.find_subjects(object=ctd_l0_all_data_process_id, id_only=True)
self.assertEquals(len(obj_assns), 0)
self.assertEquals(len(sbj_assns), 0)
with self.assertRaises(NotFound):
self.rrclient.read(ctd_l0_all_data_process_id)
#---------------------------------------------------------------------------------------------------------------
# Force deleting a data process definition
#---------------------------------------------------------------------------------------------------------------
self.dataprocessclient.force_delete_data_process_definition(ctd_L0_all_dprocdef_id)
# find all associations where this is the subject
_, obj_assns = self.rrclient.find_objects(subject=ctd_l0_all_data_process_id, id_only=True)
# find all associations where this is the object
_, sbj_assns = self.rrclient.find_subjects(object=ctd_l0_all_data_process_id, id_only=True)
self.assertEquals(len(obj_assns), 0)
self.assertEquals(len(sbj_assns), 0)
with self.assertRaises(NotFound):
self.rrclient.read(ctd_l0_all_data_process_id)
def test_transform_function_crd(self):
tf = TransformFunction(name='simple', module='pyon.ion.process', cls='SimpleProcess')
tf_id = self.dataprocessclient.create_transform_function(tf)
self.assertTrue(tf_id)
tf2_id = self.dataprocessclient.create_transform_function(tf)
self.assertEquals(tf_id, tf2_id)
tf_obj = self.dataprocessclient.read_transform_function(tf_id)
self.assertEquals([tf.name, tf.module, tf.cls, tf.function_type], [tf_obj.name, tf_obj.module, tf_obj.cls, tf_obj.function_type])
tf.module = 'dev.null'
self.assertRaises(BadRequest, self.dataprocessclient.create_transform_function, tf)
self.dataprocessclient.delete_transform_function(tf_id)
self.assertRaises(NotFound, self.dataprocessclient.read_transform_function, tf_id)
class TestIntDataAcquisitionManagementService(IonIntegrationTestCase):
def setUp(self):
# Start container
self._start_container()
self.container.start_rel_from_url('res/deploy/r2deploy.yml')
# Now create client to DataAcquisitionManagementService
self.client = DataAcquisitionManagementServiceClient(node=self.container.node)
self.rrclient = ResourceRegistryServiceClient(node=self.container.node)
self.dataproductclient = DataProductManagementServiceClient(node=self.container.node)
self.dataprocessclient = DataProcessManagementServiceClient(node=self.container.node)
def tearDown(self):
pass
#@unittest.skip('Not done yet.')
def test_data_source_ops(self):
# test creating a new data source
print 'Creating new data source'
datasource_obj = IonObject(RT.DataSource,
name='DataSource1',
description='instrument based new source' ,
type='sbe37')
try:
ds_id = self.client.create_data_source(datasource_obj)
except BadRequest as ex:
self.fail("failed to create new data source: %s" %ex)
print 'new data source id = ', ds_id
# test reading a non-existent data source
print 'reading non-existent data source'
try:
dp_obj = self.client.read_data_source('some_fake_id')
except NotFound as ex:
pass
else:
self.fail("non-existing data source was found during read: %s" %dp_obj)
# update a data source (tests read also)
print 'Updating data source'
# first get the existing data source object
try:
datasource_obj = self.client.read_data_source(ds_id)
except NotFound as ex:
self.fail("existing data source was not found during read")
else:
pass
# now tweak the object
datasource_obj.description = 'the very first data source'
# now write the dp back to the registry
try:
update_result = self.client.update_data_source(datasource_obj)
except NotFound as ex:
self.fail("existing data source was not found during update")
except Conflict as ex:
self.fail("revision conflict exception during data source update")
#else:
# self.assertTrue(update_result == True)
# now get the data source back to see if it was updated
try:
datasource_obj = self.client.read_data_source(ds_id)
except NotFound as ex:
self.fail("existing data source was not found during read")
else:
pass
self.assertTrue(datasource_obj.description == 'the very first data source')
# now 'delete' the data source
print "deleting data source"
try:
delete_result = self.client.force_delete_data_source(ds_id)
except NotFound as ex:
self.fail("existing data source was not found during delete")
#self.assertTrue(delete_result == True)
# now try to get the deleted dp object
try:
dp_obj = self.client.read_data_source(ds_id)
except NotFound as ex:
pass
else:
self.fail("deleted data source was found during read")
# now try to delete the already deleted data source object
print "deleting non-existing data source"
try:
delete_result = self.client.delete_data_source(ds_id)
except NotFound as ex:
pass
else:
self.fail("non-existing data source was found during delete")
#@unittest.skip('Not done yet.')
def test_register_instrument(self):
# Register an instrument as a data producer in coordination with DM PubSub: create stream, register and create producer object
# set up initial instrument to register
instrument_obj = IonObject(RT.InstrumentDevice, name='Inst1',description='an instrument that is creating the data product')
instrument_id, rev = self.rrclient.create(instrument_obj)
dataproduct_obj = IonObject(RT.DataProduct, name='DataProduct1',description='sample data product')
dataproduct_id, rev = self.rrclient.create(dataproduct_obj)
# test registering a new data producer
try:
ds_id = self.client.register_instrument(instrument_id)
except BadRequest as ex:
self.fail("failed to create new data producer: %s" %ex)
print 'new data producer id = ', ds_id
# test assigning a data product to an instrument, creating the stream for the product
try:
self.client.assign_data_product(instrument_id, dataproduct_id)
self.client.assign_data_product_source(dataproduct_id, instrument_id)
except BadRequest as ex:
self.fail("failed to assign data product to data producer: %s" %ex)
except NotFound as ex:
self.fail("failed to assign data product to data producer: %s" %ex)
assocs = self.rrclient.find_associations(dataproduct_id, PRED.hasSource, instrument_id)
if not assocs or len(assocs) == 0:
self.fail("failed to assign data product to data producer")
# test UNassigning a data product from instrument, deleting the stream for the product
try:
self.client.unassign_data_product(instrument_id, dataproduct_id)
self.client.unassign_data_product_source(dataproduct_id, instrument_id)
except BadRequest as ex:
self.fail("failed to failed to UNassign data product to data producer data producer: %s" %ex)
except NotFound as ex:
self.fail("failed to failed to UNassign data product to data producer data producer: %s" %ex)
assocs = self.rrclient.find_associations(dataproduct_id, PRED.hasSource, instrument_id)
if assocs:
self.fail("failed to unassign data product to data producer")
# test UNregistering a new data producer
try:
ds_id = self.client.unregister_instrument(instrument_id)
except NotFound as ex:
self.fail("failed to unregister instrument producer: %s" %ex)
def test_register_external_data_set(self):
# Register an external data set as a data producer in coordination with DM PubSub: create stream, register and create producer object
# set up initial instrument to register
ext_dataset_obj = IonObject(RT.ExternalDataset, name='DataSet1',description='an external data feed')
ext_dataset_id, rev = self.rrclient.create(ext_dataset_obj)
dataproduct_obj = IonObject(RT.DataProduct, name='DataProduct1',description='sample data product')
dataproduct_id, rev = self.rrclient.create(dataproduct_obj)
# test registering a new external data set
try:
ds_id = self.client.register_external_data_set(ext_dataset_id)
except BadRequest as ex:
self.fail("failed to create new data producer: %s" %ex)
print 'new data producer id = ', ds_id
# test assigning a data product to an ext_dataset_id, creating the stream for the product
try:
self.client.assign_data_product(ext_dataset_id, dataproduct_id)
except BadRequest as ex:
self.fail("failed to assign data product to data producer: %s" %ex)
except NotFound as ex:
self.fail("failed to assign data product to data producer: %s" %ex)
# test UNassigning a data product from ext_dataset_id, deleting the stream for the product
try:
self.client.unassign_data_product(ext_dataset_id, dataproduct_id)
except BadRequest as ex:
self.fail("failed to failed to UNassign data product to data producer data producer: %s" %ex)
except NotFound as ex:
self.fail("failed to failed to UNassign data product to data producer data producer: %s" %ex)
# test UNregistering a external data set
try:
ds_id = self.client.unregister_external_data_set(ext_dataset_id)
except NotFound as ex:
self.fail("failed to unregister instrument producer: %s" %ex)
#@unittest.skip('not ready')
def test_eoi_resources(self):
#
# test creating a new data provider
#
print 'Creating new external_data_provider'
dataprovider_obj = IonObject(RT.ExternalDataProvider,
name='ExtDataProvider1',
description='external data provider ')
try:
dataprovider_id = self.client.create_external_data_provider(dataprovider_obj)
except BadRequest as ex:
self.fail("failed to create new data provider: %s" %ex)
print 'new data provider id = ', dataprovider_id
#
# test creating a new data source
#
print 'Creating new data source'
datasource_obj = IonObject(RT.DataSource,
name='DataSource1',
description='data source ',
type='DAP')
try:
datasource_id = self.client.create_data_source(datasource_obj)
except BadRequest as ex:
self.fail("failed to create new data source: %s" %ex)
print 'new data source id = ', datasource_id
#
# test creating a new data source model
#
print 'Creating new data source model'
datamodel_obj = IonObject(RT.DataSourceModel,
name='DataSourceModel1',
description='data source model')
try:
datamodel_id = self.client.create_data_source_model(datamodel_obj)
except BadRequest as ex:
self.fail("failed to create new data source model: %s" %ex)
print 'new data source model id = ', datamodel_id
#
# test creating a new external data set
#
print 'Creating new external data set'
dataset_obj = IonObject(RT.ExternalDataset,
name='ExternalDataSet1',
description='external data set ')
try:
extdataset_id = self.client.create_external_dataset(dataset_obj)
except BadRequest as ex:
self.fail("failed to create new external data set: %s" %ex)
print 'new external data set id = ', extdataset_id
#
# test creating a new dataset agent instance
#
print 'Creating new external data agent '
datasetagent_obj = IonObject(RT.ExternalDatasetAgent,
name='ExternalDatasetAgent1',
description='external data agent ',
handler_module = 'module_name',
handler_class = 'class_name')
try:
datasetagent_id = self.client.create_external_dataset_agent(datasetagent_obj)
except BadRequest as ex:
self.fail("failed to create new external dataset agent: %s" %ex)
print 'new external data agent id = ', datasetagent_id
#
# test creating a new datasource agent instance
#
print 'Creating new data source agent '
datasourceagent_obj = IonObject(RT.DataSourceAgent,
name='DataSourceAgent1',
description=' DataSource agent ')
try:
datasource_agent_id = self.client.create_data_source_agent(datasourceagent_obj)
except BadRequest as ex:
self.fail("failed to create new external datasource agent: %s" %ex)
print 'new external data agent id = ', datasource_agent_id
#
# test creating a new dataset agent instance
#
print 'Creating new external dataset agent instance'
datasetagentinstance_obj = IonObject(RT.ExternalDatasetAgentInstance,
name='ExternalDatasetAgentInstance1',
description='external dataset agent instance ')
try:
datasetagentinstance_id = self.client.create_external_dataset_agent_instance(datasetagentinstance_obj, datasetagent_id)
except BadRequest as ex:
self.fail("failed to create new external dataset agent instance: %s" %ex)
print 'new external data agent instance id = ', datasetagentinstance_id
#
# test creating a new datasource agent instance
#
print 'Creating new data source agent '
datasourceagentinstance_obj = IonObject(RT.DataSourceAgentInstance,
name='ExternalDataSourceAgentInstance1',
description='external DataSource agent instance ')
try:
datasource_agent_instance_id = self.client.create_data_source_agent_instance(datasourceagentinstance_obj)
except BadRequest as ex:
self.fail("failed to create new external datasource agent instance: %s" %ex)
print 'new external data agent id = ', datasource_agent_instance_id
#
# test assign / unassign
#
self.client.unassign_data_source_from_external_data_provider(datasource_id, dataprovider_id)
self.client.unassign_data_source_from_data_model(datasource_id, datamodel_id)
self.client.unassign_external_dataset_from_data_source(extdataset_id, datasource_id)
#
# test read
#
try:
dp_obj = self.client.read_external_data_provider(dataprovider_id)
except NotFound as ex:
self.fail("existing data provicer was not found during read")
else:
pass
try:
dp_obj = self.client.read_data_source(datasource_id)
except NotFound as ex:
self.fail("existing data source was not found during read")
else:
pass
#
# test delete
#
try:
self.client.delete_external_data_provider(dataprovider_id)
self.client.delete_data_source(datasource_id)
self.client.delete_external_dataset(extdataset_id)
self.client.delete_data_source_model(datamodel_id)
self.client.delete_external_dataset_agent(datasetagent_id)
self.client.delete_data_source_agent_instance(datasource_agent_instance_id)
self.client.force_delete_external_data_provider(dataprovider_id)
self.client.force_delete_data_source(datasource_id)
self.client.force_delete_external_dataset(extdataset_id)
self.client.force_delete_data_source_model(datamodel_id)
self.client.force_delete_external_dataset_agent(datasetagent_id)
self.client.force_delete_data_source_agent_instance(datasource_agent_instance_id)
except NotFound as ex:
self.fail("existing data product was not found during delete")
# test reading a non-existent data product
print 'reading non-existent data product'
try:
bad_obj = self.client.read_external_data_provider('some_fake_id')
except NotFound as ex:
pass
else:
self.fail("non-existing data product was found during read: %s" %bad_obj)
class TestResourceRegistry(IonIntegrationTestCase):
def setUp(self):
# Start container
self._start_container()
self.container.start_rel_from_url('res/deploy/r2coi.yml')
# Now create client to bank service
self.resource_registry_service = ResourceRegistryServiceClient(
node=self.container.node)
def test_crud(self):
# Some quick registry tests
# Can't call new with fields that aren't defined in the object's schema
with self.assertRaises(TypeError) as cm:
IonObject("UserInfo", name="name", foo="bar")
self.assertTrue(cm.exception.message ==
"__init__() got an unexpected keyword argument 'foo'")
# Can't call new with fields that aren't defined in the object's schema
with self.assertRaises(TypeError) as cm:
IonObject("UserInfo", {"name": "name", "foo": "bar"})
self.assertTrue(cm.exception.message ==
"__init__() got an unexpected keyword argument 'foo'")
# Can't call new with fields that aren't defined in the object's schema
with self.assertRaises(TypeError) as cm:
IonObject("UserInfo", {"name": "name"}, foo="bar")
self.assertTrue(cm.exception.message ==
"__init__() got an unexpected keyword argument 'foo'")
# Instantiate an object
obj = IonObject("UserInfo", name="name")
# Can set attributes that aren't in the object's schema
with self.assertRaises(AttributeError) as cm:
setattr(obj, "foo", "bar")
self.assertTrue(
cm.exception.message == "'UserInfo' object has no attribute 'foo'")
# Cam't call update with object that hasn't been persisted
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.update(obj)
self.assertTrue(
cm.exception.message.startswith(
"Object does not have required '_id' or '_rev' attribute"))
# Persist object and read it back
obj_id, obj_rev = self.resource_registry_service.create(obj)
read_obj = self.resource_registry_service.read(obj_id)
# Cannot create object with _id and _rev fields pre-set
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.create(read_obj)
self.assertTrue(
cm.exception.message.startswith("Doc must not have '_id'"))
# Update object
read_obj.name = "John Doe"
self.resource_registry_service.update(read_obj)
# Update should fail with revision mismatch
with self.assertRaises(Conflict) as cm:
self.resource_registry_service.update(read_obj)
self.assertTrue(
cm.exception.message.startswith(
"Object not based on most current version"))
# Re-read and update object
read_obj = self.resource_registry_service.read(obj_id)
self.resource_registry_service.update(read_obj)
# Delete object
self.resource_registry_service.delete(obj_id)
# Make sure read, update and delete report error
with self.assertRaises(NotFound) as cm:
self.resource_registry_service.read(obj_id)
self.assertTrue(cm.exception.message.startswith("Object with id"))
with self.assertRaises(NotFound) as cm:
self.resource_registry_service.update(read_obj)
self.assertTrue(cm.exception.message.startswith("Object with id"))
with self.assertRaises(NotFound) as cm:
self.resource_registry_service.delete(obj_id)
self.assertTrue(cm.exception.message.startswith("Object with id"))
# Owner creation tests
user = IonObject("ActorIdentity", name='user')
uid, _ = self.resource_registry_service.create(user)
inst = IonObject("InstrumentDevice", name='instrument')
iid, _ = self.resource_registry_service.create(
inst, headers={'ion-actor-id': str(uid)})
ids, _ = self.resource_registry_service.find_objects(iid,
PRED.hasOwner,
RT.ActorIdentity,
id_only=True)
self.assertEquals(len(ids), 1)
assoc = self.resource_registry_service.read(ids[0])
self.resource_registry_service.delete(iid)
with self.assertRaises(NotFound) as ex:
assoc = self.resource_registry_service.read(iid)
def test_lifecycle(self):
att = IonObject("InstrumentDevice", name='mine', description='desc')
rid, rev = self.resource_registry_service.create(att)
att1 = self.resource_registry_service.read(rid)
self.assertEquals(att1.name, att.name)
self.assertEquals(att1.lcstate, LCS.DRAFT_PRIVATE)
new_state = self.resource_registry_service.execute_lifecycle_transition(
rid, LCE.PLAN)
self.assertEquals(new_state, LCS.PLANNED_PRIVATE)
att2 = self.resource_registry_service.read(rid)
self.assertEquals(att2.lcstate, LCS.PLANNED_PRIVATE)
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.execute_lifecycle_transition(
rid, LCE.UNANNOUNCE)
self.assertTrue(
"type=InstrumentDevice, lcstate=PLANNED_PRIVATE has no transition for event unannounce"
in cm.exception.message)
new_state = self.resource_registry_service.execute_lifecycle_transition(
rid, LCE.DEVELOP)
self.assertEquals(new_state, LCS.DEVELOPED_PRIVATE)
self.assertRaises(
iex.BadRequest,
self.resource_registry_service.execute_lifecycle_transition,
resource_id=rid,
transition_event='NONE##')
self.resource_registry_service.set_lifecycle_state(
rid, LCS.INTEGRATED_PRIVATE)
att1 = self.resource_registry_service.read(rid)
self.assertEquals(att1.lcstate, LCS.INTEGRATED_PRIVATE)
def test_association(self):
# Instantiate ActorIdentity object
actor_identity_obj = IonObject("ActorIdentity", name="name")
actor_identity_obj_id, actor_identity_obj_rev = self.resource_registry_service.create(
actor_identity_obj)
read_actor_identity_obj = self.resource_registry_service.read(
actor_identity_obj_id)
# Instantiate UserInfo object
user_info_obj = IonObject("UserInfo", name="name")
user_info_obj_id, user_info_obj_rev = self.resource_registry_service.create(
user_info_obj)
read_user_info_obj = self.resource_registry_service.read(
user_info_obj_id)
# Test create failures
with self.assertRaises(AttributeError) as cm:
self.resource_registry_service.create_association(
actor_identity_obj_id, PRED.bogus, user_info_obj_id)
self.assertTrue(cm.exception.message == "bogus")
# Predicate not provided
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.create_association(
actor_identity_obj_id, None, user_info_obj_id)
self.assertTrue(
cm.exception.message == "Association must have all elements set")
# Bad association type
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.create_association(
actor_identity_obj_id, PRED.hasInfo, user_info_obj_id,
'bogustype')
self.assertTrue(
cm.exception.message == "Unsupported assoc_type: bogustype")
# Subject id or object not provided
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.create_association(
None, PRED.hasInfo, user_info_obj_id)
self.assertTrue(
cm.exception.message == "Association must have all elements set")
# Object id or object not provided
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.create_association(
actor_identity_obj_id, PRED.hasInfo, None)
self.assertTrue(
cm.exception.message == "Association must have all elements set")
# Bad subject id
with self.assertRaises(NotFound) as cm:
self.resource_registry_service.create_association(
"bogus", PRED.hasInfo, user_info_obj_id)
self.assertTrue(
cm.exception.message == "Object with id bogus does not exist.")
# Bad object id
with self.assertRaises(NotFound) as cm:
self.resource_registry_service.create_association(
actor_identity_obj_id, PRED.hasInfo, "bogus")
self.assertTrue(
cm.exception.message == "Object with id bogus does not exist.")
# _id missing from subject
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.create_association(
actor_identity_obj, PRED.hasInfo, user_info_obj_id)
self.assertTrue(
cm.exception.message == "Subject id or rev not available")
# _id missing from object
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.create_association(
actor_identity_obj_id, PRED.hasInfo, user_info_obj)
self.assertTrue(
cm.exception.message == "Object id or rev not available")
# Wrong subject type
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.create_association(
user_info_obj_id, PRED.hasInfo, user_info_obj_id)
self.assertTrue(cm.exception.message ==
"Illegal subject type UserInfo for predicate hasInfo")
# Wrong object type
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.create_association(
actor_identity_obj_id, PRED.hasInfo, actor_identity_obj_id)
self.assertTrue(
cm.exception.message ==
"Illegal object type ActorIdentity for predicate hasInfo")
# Create two different association types between the same subject and predicate
assoc_id1, assoc_rev1 = self.resource_registry_service.create_association(
actor_identity_obj_id, PRED.hasInfo, user_info_obj_id)
# Read object, subject
res_obj1 = self.resource_registry_service.read_object(
actor_identity_obj_id, PRED.hasInfo, RT.UserInfo)
self.assertEquals(res_obj1._id, user_info_obj_id)
res_obj1 = self.resource_registry_service.read_object(
actor_identity_obj_id, PRED.hasInfo, RT.UserInfo, id_only=True)
self.assertEquals(res_obj1, user_info_obj_id)
res_obj2 = self.resource_registry_service.read_subject(
RT.ActorIdentity, PRED.hasInfo, user_info_obj_id)
self.assertEquals(res_obj2._id, actor_identity_obj_id)
res_obj2 = self.resource_registry_service.read_subject(
RT.ActorIdentity, PRED.hasInfo, user_info_obj_id, id_only=True)
self.assertEquals(res_obj2, actor_identity_obj_id)
# Create a similar association to a specific revision
# TODO: This is not a supported case so far
assoc_id2, assoc_rev2 = self.resource_registry_service.create_association(
actor_identity_obj_id, PRED.hasInfo, user_info_obj_id, "H2R")
# Search for associations (good cases)
ret1 = self.resource_registry_service.find_associations(
actor_identity_obj_id, PRED.hasInfo, user_info_obj_id)
ret2 = self.resource_registry_service.find_associations(
actor_identity_obj_id, PRED.hasInfo)
ret3 = self.resource_registry_service.find_associations(
None, PRED.hasInfo)
self.assertTrue(len(ret1) == len(ret2) == len(ret3))
self.assertTrue(ret1[0]._id == ret2[0]._id == ret3[0]._id)
ret1 = self.resource_registry_service.find_associations(
actor_identity_obj_id, PRED.hasInfo, user_info_obj_id, None, False)
ret2 = self.resource_registry_service.find_associations(
actor_identity_obj_id, PRED.hasInfo, id_only=False)
ret3 = self.resource_registry_service.find_associations(
predicate=PRED.hasInfo, id_only=False)
self.assertTrue(ret1 == ret2 == ret3)
# Search for associations (good cases)
ret1 = self.resource_registry_service.find_associations(
read_actor_identity_obj, PRED.hasInfo, read_user_info_obj)
ret2 = self.resource_registry_service.find_associations(
read_actor_identity_obj, PRED.hasInfo)
ret3 = self.resource_registry_service.find_associations(
None, PRED.hasInfo)
self.assertTrue(len(ret1) == len(ret2) == len(ret3))
self.assertTrue(ret1[0]._id == ret2[0]._id == ret3[0]._id)
ret1 = self.resource_registry_service.find_associations(
actor_identity_obj_id, PRED.hasInfo, read_user_info_obj, None,
True)
ret2 = self.resource_registry_service.find_associations(
actor_identity_obj_id, PRED.hasInfo, id_only=True)
ret3 = self.resource_registry_service.find_associations(
predicate=PRED.hasInfo, id_only=True)
self.assertTrue(ret1 == ret2 == ret3)
# Search for associations (bad cases)
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.find_associations(None, None, None)
self.assertTrue(cm.exception.message == "Illegal parameters")
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.find_associations(
actor_identity_obj_id, None, None)
self.assertTrue(cm.exception.message == "Illegal parameters")
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.find_associations(
None, None, user_info_obj_id)
self.assertTrue(cm.exception.message == "Illegal parameters")
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.find_associations(
actor_identity_obj, None, user_info_obj_id)
self.assertTrue(
cm.exception.message == "Object id not available in subject")
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.find_associations(
actor_identity_obj_id, None, user_info_obj)
self.assertTrue(
cm.exception.message == "Object id not available in object")
# Find subjects (good cases)
subj_ret1 = self.resource_registry_service.find_subjects(
RT.ActorIdentity, PRED.hasInfo, user_info_obj_id, True)
subj_ret2 = self.resource_registry_service.find_subjects(
RT.ActorIdentity, PRED.hasInfo, read_user_info_obj, True)
self.assertTrue(len(subj_ret1) == len(subj_ret2))
self.assertTrue(subj_ret1[0] == subj_ret2[0])
self.assertTrue(subj_ret1[1][0]._id == subj_ret2[1][0]._id)
subj_ret3 = self.resource_registry_service.find_subjects(
None, PRED.hasInfo, user_info_obj_id, True)
subj_ret4 = self.resource_registry_service.find_subjects(
None, None, read_user_info_obj, True)
self.assertTrue(len(subj_ret3) == len(subj_ret4))
self.assertTrue(subj_ret3[0] == subj_ret4[0])
self.assertTrue(subj_ret3[1][0]._id == subj_ret4[1][0]._id)
subj_ret5 = self.resource_registry_service.find_subjects(
None, PRED.hasInfo, user_info_obj_id, False)
subj_ret6 = self.resource_registry_service.find_subjects(
None, None, read_user_info_obj, False)
self.assertTrue(len(subj_ret5) == len(subj_ret6))
self.assertTrue(subj_ret5[0][0]._id == subj_ret6[0][0]._id)
self.assertTrue(subj_ret5[1][0]._id == subj_ret6[1][0]._id)
# Find subjects (bad cases)
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.find_subjects(None, None, None)
self.assertTrue(cm.exception.message == "Must provide object")
with self.assertRaises(AttributeError) as cm:
self.resource_registry_service.find_subjects(
RT.UserCredentials, PRED.bogus, user_info_obj_id, True)
self.assertTrue(cm.exception.message == "bogus")
ret = self.resource_registry_service.find_subjects(
RT.UserInfo, PRED.hasCredentials, user_info_obj_id, True)
self.assertTrue(len(ret[0]) == 0)
ret = self.resource_registry_service.find_subjects(
RT.UserCredentials, PRED.hasInfo, user_info_obj_id, True)
self.assertTrue(len(ret[0]) == 0)
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.find_subjects(
RT.UserCredentials, PRED.hasInfo, user_info_obj, True)
self.assertTrue(
cm.exception.message == "Object id not available in object")
# Find objects (good cases)
subj_ret1 = self.resource_registry_service.find_objects(
actor_identity_obj_id, PRED.hasInfo, RT.UserInfo, True)
subj_ret2 = self.resource_registry_service.find_objects(
read_actor_identity_obj, PRED.hasInfo, RT.UserInfo, True)
self.assertTrue(len(subj_ret1) == len(subj_ret2))
self.assertTrue(subj_ret1[0] == subj_ret2[0])
self.assertTrue(subj_ret1[1][0]._id == subj_ret2[1][0]._id)
subj_ret3 = self.resource_registry_service.find_objects(
actor_identity_obj_id, PRED.hasInfo, None, True)
subj_ret4 = self.resource_registry_service.find_objects(
actor_identity_obj_id, None, None, True)
self.assertTrue(len(subj_ret3) == len(subj_ret4))
self.assertTrue(subj_ret3[0] == subj_ret4[0])
self.assertTrue(subj_ret3[1][0]._id == subj_ret4[1][0]._id)
subj_ret5 = self.resource_registry_service.find_objects(
actor_identity_obj_id, PRED.hasInfo, None, False)
subj_ret6 = self.resource_registry_service.find_objects(
read_actor_identity_obj, None, None, False)
self.assertTrue(len(subj_ret5) == len(subj_ret6))
self.assertTrue(subj_ret5[0][0]._id == subj_ret6[0][0]._id)
self.assertTrue(subj_ret5[1][0]._id == subj_ret6[1][0]._id)
# Find objects (bad cases)
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.find_objects(None, None, None)
self.assertTrue(cm.exception.message == "Must provide subject")
with self.assertRaises(AttributeError) as cm:
self.resource_registry_service.find_objects(
actor_identity_obj_id, PRED.bogus, RT.UserCredentials, True)
self.assertTrue(cm.exception.message == "bogus")
ret = self.resource_registry_service.find_objects(
actor_identity_obj_id, PRED.hasCredentials, RT.ActorIdentity, True)
self.assertTrue(len(ret[0]) == 0)
ret = self.resource_registry_service.find_objects(
actor_identity_obj_id, PRED.hasInfo, RT.UserCredentials, True)
self.assertTrue(len(ret[0]) == 0)
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.find_objects(
actor_identity_obj, PRED.hasInfo, RT.UserInfo, True)
self.assertTrue(
cm.exception.message == "Object id not available in subject")
# Get association (bad cases)
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.get_association(None, None, None)
self.assertTrue(cm.exception.message == "Illegal parameters")
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.get_association(
actor_identity_obj_id, None, None)
self.assertTrue(cm.exception.message == "Illegal parameters")
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.get_association(
None, None, user_info_obj_id)
self.assertTrue(cm.exception.message == "Illegal parameters")
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.get_association(
actor_identity_obj, None, user_info_obj_id)
self.assertTrue(
cm.exception.message == "Object id not available in subject")
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.get_association(
actor_identity_obj_id, None, user_info_obj)
self.assertTrue(
cm.exception.message == "Object id not available in object")
# Delete one of the associations
self.resource_registry_service.delete_association(assoc_id2)
assoc = self.resource_registry_service.get_association(
actor_identity_obj_id, PRED.hasInfo, user_info_obj_id)
self.assertTrue(assoc._id == assoc_id1)
# Delete (bad cases)
with self.assertRaises(NotFound) as cm:
self.resource_registry_service.delete_association("bogus")
self.assertTrue(
cm.exception.message == "Object with id bogus does not exist.")
# Delete other association
self.resource_registry_service.delete_association(assoc_id1)
# Delete resources
self.resource_registry_service.delete(actor_identity_obj_id)
self.resource_registry_service.delete(user_info_obj_id)
def test_find_resources(self):
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.find_resources(
RT.UserInfo, LCS.DRAFT, "name", False)
self.assertTrue(
cm.exception.message == "find by name does not support lcstate")
ret = self.resource_registry_service.find_resources(
RT.UserInfo, None, "name", False)
self.assertTrue(len(ret[0]) == 0)
# Instantiate an object
obj = IonObject("InstrumentDevice", name="name")
# Persist object and read it back
obj_id, obj_rev = self.resource_registry_service.create(obj)
read_obj = self.resource_registry_service.read(obj_id)
ret = self.resource_registry_service.find_resources(
RT.InstrumentDevice, None, "name", False)
self.assertTrue(len(ret[0]) == 1)
self.assertTrue(ret[0][0]._id == read_obj._id)
ret = self.resource_registry_service.find_resources(
RT.InstrumentDevice, LCS.DRAFT, None, False)
self.assertTrue(len(ret[0]) == 1)
self.assertTrue(ret[0][0]._id == read_obj._id)
def test_attach(self):
binary = "\x89PNG\r\n\x1a\n\x00\x00\x00\rIHDR\x00\x00\x00\x10\x00\x00\x00\x10\x08\x03\x00\x00\x00(-\x0fS\x00\x00\x00\x03sBIT\x08\x08\x08\xdb\xe1O\xe0\x00\x00\x00~PLTEf3\x00\xfc\xf7\xe0\xee\xcc\x00\xd3\xa0\x00\xcc\x99\x00\xec\xcdc\x9fl\x00\xdd\xb2\x00\xff\xff\xff|I\x00\xf9\xdb\x00\xdd\xb5\x19\xd9\xad\x10\xb6\x83\x00\xf8\xd6\x00\xf2\xc5\x00\xd8\xab\x00n;\x00\xff\xcc\x00\xd6\xa4\t\xeb\xb8\x00\x83Q\x00\xadz\x00\xff\xde\x00\xff\xd6\x00\xd6\xa3\x00\xdf\xaf\x00\xde\xad\x10\xbc\x8e\x00\xec\xbe\x00\xec\xd4d\xff\xe3\x00tA\x00\xf6\xc4\x00\xf6\xce\x00\xa5u\x00\xde\xa5\x00\xf7\xbd\x00\xd6\xad\x08\xdd\xaf\x19\x8cR\x00\xea\xb7\x00\xee\xe9\xdf\xc5\x00\x00\x00\tpHYs\x00\x00\n\xf0\x00\x00\n\xf0\x01B\xac4\x98\x00\x00\x00\x1ctEXtSoftware\x00Adobe Fireworks CS4\x06\xb2\xd3\xa0\x00\x00\x00\x15tEXtCreation Time\x0029/4/09Oq\xfdE\x00\x00\x00\xadIDAT\x18\x95M\x8f\x8d\x0e\x820\x0c\x84;ZdC~f\x07\xb2\x11D\x86\x89\xe8\xfb\xbf\xa0+h\xe2\x97\\\xd2^\x93\xb6\x07:1\x9f)q\x9e\xa5\x06\xad\xd5\x13\x8b\xac,\xb3\x02\x9d\x12C\xa1-\xef;M\x08*\x19\xce\x0e?\x1a\xeb4\xcc\xd4\x0c\x831\x87V\xca\xa1\x1a\xd3\x08@\xe4\xbd\xb7\x15P;\xc8\xd4{\x91\xbf\x11\x90\xffg\xdd\x8di\xfa\xb6\x0bs2Z\xff\xe8yg2\xdc\x11T\x96\xc7\x05\xa5\xef\x96+\xa7\xa59E\xae\xe1\x84cm^1\xa6\xb3\xda\x85\xc8\xd8/\x17se\x0eN^'\x8c\xc7\x8e\x88\xa8\xf6p\x8e\xc2;\xc6.\xd0\x11.\x91o\x12\x7f\xcb\xa5\xfe\x00\x89]\x10:\xf5\x00\x0e\xbf\x00\x00\x00\x00IEND\xaeB`\x82"
# Owner creation tests
instrument = IonObject("InstrumentDevice", name='instrument')
iid, _ = self.resource_registry_service.create(instrument)
att = Attachment(content=binary, attachment_type=AttachmentType.BLOB)
aid1 = self.resource_registry_service.create_attachment(iid, att)
att1 = self.resource_registry_service.read_attachment(aid1)
self.assertEquals(binary, att1.content)
import base64
att = Attachment(content=base64.encodestring(binary),
attachment_type=AttachmentType.ASCII)
aid2 = self.resource_registry_service.create_attachment(iid, att)
att1 = self.resource_registry_service.read_attachment(aid2)
self.assertEquals(binary, base64.decodestring(att1.content))
att_ids = self.resource_registry_service.find_attachments(iid,
id_only=True)
self.assertEquals(att_ids, [aid1, aid2])
att_ids = self.resource_registry_service.find_attachments(
iid, id_only=True, descending=True)
self.assertEquals(att_ids, [aid2, aid1])
att_ids = self.resource_registry_service.find_attachments(
iid, id_only=True, descending=True, limit=1)
self.assertEquals(att_ids, [aid2])
atts = self.resource_registry_service.find_attachments(iid,
id_only=False,
limit=1)
self.assertEquals(atts[0].content, att1.content)
self.resource_registry_service.delete_attachment(aid1)
att_ids = self.resource_registry_service.find_attachments(iid,
id_only=True)
self.assertEquals(att_ids, [aid2])
self.resource_registry_service.delete_attachment(aid2)
att_ids = self.resource_registry_service.find_attachments(iid,
id_only=True)
self.assertEquals(att_ids, [])
def test_read_mult(self):
test_resource1_id, _ = self.resource_registry_service.create(
Resource(name='test1'))
test_resource2_id, _ = self.resource_registry_service.create(
Resource(name='test2'))
res_list = [test_resource1_id, test_resource2_id]
objects = self.resource_registry_service.read_mult(res_list)
for o in objects:
self.assertIsInstance(o, Resource)
self.assertTrue(o._id in res_list)
def test_find_associations_mult(self):
dp = DataProcess()
transform = Transform()
pd = ProcessDefinition()
dp_id, _ = self.resource_registry_service.create(dp)
transform_id, _ = self.resource_registry_service.create(transform)
pd_id, _ = self.resource_registry_service.create(pd)
self.resource_registry_service.create_association(
subject=dp_id, object=transform_id, predicate=PRED.hasTransform)
self.resource_registry_service.create_association(
subject=transform_id,
object=pd_id,
predicate=PRED.hasProcessDefinition)
results, _ = self.resource_registry_service.find_associations_mult(
subjects=[dp_id], id_only=True)
self.assertTrue(results == [transform_id])
results, _ = self.resource_registry_service.find_associations_mult(
subjects=[dp_id, transform_id], id_only=True)
results.sort()
correct = [transform_id, pd_id]
correct.sort()
self.assertTrue(results == correct)
class TransformManagementServiceIntTest(IonIntegrationTestCase):
def setUp(self):
# set up the container
self._start_container()
self.container.start_rel_from_url("res/deploy/r2dm.yml")
self.pubsub_cli = PubsubManagementServiceClient(node=self.container.node)
self.tms_cli = TransformManagementServiceClient(node=self.container.node)
self.rr_cli = ResourceRegistryServiceClient(node=self.container.node)
self.procd_cli = ProcessDispatcherServiceClient(node=self.container.node)
self.input_stream_id = self.pubsub_cli.create_stream(name="input_stream", original=True)
self.input_subscription_id = self.pubsub_cli.create_subscription(
query=StreamQuery(stream_ids=[self.input_stream_id]),
exchange_name="transform_input",
name="input_subscription",
)
self.output_stream_id = self.pubsub_cli.create_stream(name="output_stream", original=True)
self.process_definition = ProcessDefinition(name="basic_transform_definition")
self.process_definition.executable = {
"module": "ion.processes.data.transforms.transform_example",
"class": "TransformExample",
}
self.process_definition_id = self.procd_cli.create_process_definition(
process_definition=self.process_definition
)
@attr("LOCOINT")
@unittest.skipIf(os.getenv("CEI_LAUNCH_TEST", False), "Not integrated for CEI")
def test_create_transform(self):
configuration = {"program_args": {"arg1": "value"}}
transform_id = self.tms_cli.create_transform(
name="test_transform",
in_subscription_id=self.input_subscription_id,
out_streams={"output": self.output_stream_id},
process_definition_id=self.process_definition_id,
)
# test transform creation in rr
transform = self.rr_cli.read(transform_id)
self.assertEquals(transform.name, "test_transform")
# test associations
predicates = [PRED.hasSubscription, PRED.hasOutStream, PRED.hasProcessDefinition]
assocs = []
for p in predicates:
assocs += self.rr_cli.find_associations(transform_id, p, id_only=True)
self.assertEquals(len(assocs), 3)
# test process creation
transform = self.tms_cli.read_transform(transform_id)
pid = transform.process_id
proc = self.container.proc_manager.procs.get(pid)
self.assertIsInstance(proc, TransformExample)
# clean up
self.tms_cli.delete_transform(transform_id)
def test_create_transform_no_procdef(self):
with self.assertRaises(NotFound):
self.tms_cli.create_transform(name="test", in_subscription_id=self.input_subscription_id)
def test_create_transform_bad_procdef(self):
with self.assertRaises(NotFound):
self.tms_cli.create_transform(
name="test", in_subscription_id=self.input_subscription_id, process_definition_id="bad"
)
def test_create_transform_no_config(self):
transform_id = self.tms_cli.create_transform(
name="test_transform",
in_subscription_id=self.input_subscription_id,
out_streams={"output": self.output_stream_id},
process_definition_id=self.process_definition_id,
)
self.tms_cli.delete_transform(transform_id)
def test_create_transform_name_failure(self):
transform_id = self.tms_cli.create_transform(
name="test_transform",
in_subscription_id=self.input_subscription_id,
out_streams={"output": self.output_stream_id},
process_definition_id=self.process_definition_id,
)
with self.assertRaises(BadRequest):
transform_id = self.tms_cli.create_transform(
name="test_transform",
in_subscription_id=self.input_subscription_id,
out_streams={"output": self.output_stream_id},
process_definition_id=self.process_definition_id,
)
self.tms_cli.delete_transform(transform_id)
@attr("LOCOINT")
@unittest.skipIf(os.getenv("CEI_LAUNCH_TEST", False), "Not integrated for CEI")
def test_create_no_output(self):
transform_id = self.tms_cli.create_transform(
name="test_transform",
in_subscription_id=self.input_subscription_id,
process_definition_id=self.process_definition_id,
)
predicates = [PRED.hasSubscription, PRED.hasOutStream, PRED.hasProcessDefinition]
assocs = []
for p in predicates:
assocs += self.rr_cli.find_associations(transform_id, p, id_only=True)
self.assertEquals(len(assocs), 2)
# test process creation
transform = self.tms_cli.read_transform(transform_id)
pid = transform.process_id
proc = self.container.proc_manager.procs.get(pid)
self.assertIsInstance(proc, TransformExample)
self.tms_cli.delete_transform(transform_id)
def test_read_transform_exists(self):
trans_obj = IonObject(RT.Transform, name="trans_obj")
trans_id, _ = self.rr_cli.create(trans_obj)
res = self.tms_cli.read_transform(trans_id)
actual = self.rr_cli.read(trans_id)
self.assertEquals(res._id, actual._id)
def test_read_transform_nonexist(self):
with self.assertRaises(NotFound) as e:
self.tms_cli.read_transform("123")
def test_activate_transform(self):
transform_id = self.tms_cli.create_transform(
name="test_transform",
in_subscription_id=self.input_subscription_id,
out_streams={"output": self.output_stream_id},
process_definition_id=self.process_definition_id,
)
self.tms_cli.activate_transform(transform_id)
# pubsub check if activated?
self.tms_cli.delete_transform(transform_id)
def test_activate_transform_nonexist(self):
with self.assertRaises(NotFound):
self.tms_cli.activate_transform("1234")
def test_delete_transform(self):
transform_id = self.tms_cli.create_transform(
name="test_transform",
in_subscription_id=self.input_subscription_id,
process_definition_id=self.process_definition_id,
)
self.tms_cli.delete_transform(transform_id)
# assertions
with self.assertRaises(NotFound):
self.rr_cli.read(transform_id)
def test_delete_transform_nonexist(self):
with self.assertRaises(NotFound):
self.tms_cli.delete_transform("123")
def test_execute_transform(self):
# set up
process_definition = ProcessDefinition(name="procdef_execute")
process_definition.executable["module"] = "ion.processes.data.transforms.transform_example"
process_definition.executable["class"] = "ReverseTransform"
data = [1, 2, 3]
process_definition_id, _ = self.rr_cli.create(process_definition)
retval = self.tms_cli.execute_transform(process_definition_id, data)
self.assertEquals(retval, [3, 2, 1])
def test_integrated_transform(self):
"""
This example script runs a chained three way transform:
B
A <
C
Where A is the even_odd transform (generates a stream of even and odd numbers from input)
and B and C are the basic transforms that receive even and odd input
"""
cc = self.container
assertions = self.assertTrue
pubsub_cli = PubsubManagementServiceClient(node=cc.node)
rr_cli = ResourceRegistryServiceClient(node=cc.node)
tms_cli = TransformManagementServiceClient(node=cc.node)
# -------------------------------
# Process Definition
# -------------------------------
# Create the process definition for the basic transform
process_definition = IonObject(RT.ProcessDefinition, name="basic_transform_definition")
process_definition.executable = {
"module": "ion.processes.data.transforms.transform_example",
"class": "TransformExample",
}
basic_transform_definition_id, _ = rr_cli.create(process_definition)
# Create The process definition for the TransformEvenOdd
process_definition = IonObject(RT.ProcessDefinition, name="evenodd_transform_definition")
process_definition.executable = {
"module": "ion.processes.data.transforms.transform_example",
"class": "TransformEvenOdd",
}
evenodd_transform_definition_id, _ = rr_cli.create(process_definition)
# -------------------------------
# Streams
# -------------------------------
streams = [pubsub_cli.create_stream() for i in xrange(5)]
# -------------------------------
# Subscriptions
# -------------------------------
query = StreamQuery(stream_ids=[streams[0]])
input_subscription_id = pubsub_cli.create_subscription(query=query, exchange_name="input_queue")
query = StreamQuery(stream_ids=[streams[1]]) # even output
even_subscription_id = pubsub_cli.create_subscription(query=query, exchange_name="even_queue")
query = StreamQuery(stream_ids=[streams[2]]) # odd output
odd_subscription_id = pubsub_cli.create_subscription(query=query, exchange_name="odd_queue")
# -------------------------------
# Launch the EvenOdd Transform
# -------------------------------
evenodd_id = tms_cli.create_transform(
name="even_odd",
in_subscription_id=input_subscription_id,
out_streams={"even": streams[1], "odd": streams[2]},
process_definition_id=evenodd_transform_definition_id,
configuration={},
)
tms_cli.activate_transform(evenodd_id)
# -------------------------------
# Launch the Even Processing Transform
# -------------------------------
even_transform_id = tms_cli.create_transform(
name="even_transform",
in_subscription_id=even_subscription_id,
out_streams={"even_plus1": streams[3]},
process_definition_id=basic_transform_definition_id,
configuration={},
)
tms_cli.activate_transform(even_transform_id)
# -------------------------------
# Launch the Odd Processing Transform
# -------------------------------
odd_transform_id = tms_cli.create_transform(
name="odd_transform",
in_subscription_id=odd_subscription_id,
out_streams={"odd_plus1": streams[4]},
process_definition_id=basic_transform_definition_id,
configuration={},
)
tms_cli.activate_transform(odd_transform_id)
# -------------------------------
# Set up final subscribers
# -------------------------------
evenplus1_subscription_id = pubsub_cli.create_subscription(
query=StreamQuery([streams[3]]),
exchange_name="evenplus1_queue",
name="EvenPlus1Subscription",
description="EvenPlus1 SubscriptionDescription",
)
oddplus1_subscription_id = pubsub_cli.create_subscription(
query=StreamQuery([streams[4]]),
exchange_name="oddplus1_queue",
name="OddPlus1Subscription",
description="OddPlus1 SubscriptionDescription",
)
total_msg_count = 2
msgs = gevent.queue.Queue()
def even1_message_received(message, headers):
input = int(message.get("num"))
assertions((input % 2)) # Assert it is odd (transform adds 1)
msgs.put(True)
def odd1_message_received(message, headers):
input = int(message.get("num"))
assertions(not (input % 2)) # Assert it is even
msgs.put(True)
subscriber_registrar = StreamSubscriberRegistrar(process=cc, node=cc.node)
even_subscriber = subscriber_registrar.create_subscriber(
exchange_name="evenplus1_queue", callback=even1_message_received
)
odd_subscriber = subscriber_registrar.create_subscriber(
exchange_name="oddplus1_queue", callback=odd1_message_received
)
# Start subscribers
even_subscriber.start()
odd_subscriber.start()
# Activate subscriptions
pubsub_cli.activate_subscription(evenplus1_subscription_id)
pubsub_cli.activate_subscription(oddplus1_subscription_id)
# -------------------------------
# Set up fake stream producer
# -------------------------------
pid = cc.spawn_process(name="dummy_process_for_test", module="pyon.ion.process", cls="SimpleProcess", config={})
dummy_process = cc.proc_manager.procs[pid]
# Normally the user does not see or create the publisher, this is part of the containers business.
# For the test we need to set it up explicitly
publisher_registrar = StreamPublisherRegistrar(process=dummy_process, node=cc.node)
stream_publisher = publisher_registrar.create_publisher(stream_id=streams[0])
# -------------------------------
# Start test
# -------------------------------
# Publish a stream
for i in xrange(total_msg_count):
stream_publisher.publish({"num": str(i)})
time.sleep(0.5)
for i in xrange(total_msg_count * 2):
try:
msgs.get()
except Empty:
assertions(False, "Failed to process all messages correctly.")
@attr("LOCOINT")
@unittest.skipIf(os.getenv("CEI_LAUNCH_TEST", False), "CEI incompatible")
def test_transform_restart(self):
tms_cli = self.tms_cli
rr_cli = self.rr_cli
pubsub_cli = self.pubsub_cli
cc = self.container
assertions = self.assertTrue
proc_def = ProcessDefinition(
executable={
"module": "ion.services.dm.transformation.test.test_transform_service",
"class": "TestTransform",
}
)
proc_def_id, _ = rr_cli.create(proc_def)
stream_id = pubsub_cli.create_stream()
subscription_id = pubsub_cli.create_subscription(
query=StreamQuery(stream_ids=[stream_id]), exchange_name="test_transform"
)
transform_id = tms_cli.create_transform(
name="test_transform", in_subscription_id=subscription_id, process_definition_id=proc_def_id
)
tms_cli.activate_transform(transform_id)
transform = rr_cli.read(transform_id)
pid = transform.process_id
assertions(cc.proc_manager.procs.has_key(pid), "Transform process was never started.")
cc.proc_manager.terminate_process(pid)
assertions(not cc.proc_manager.procs.has_key(pid), "Transform process was never killed")
handle = cc.proc_manager.procs_by_name["transform_management"]
handle._restart_transform(transform_id)
transform = rr_cli.read(transform_id)
pid = transform.process_id
assertions(cc.proc_manager.procs.has_key(pid), "Transform process was never restarted.")
class TestInstrumentDataIngestion(IonIntegrationTestCase):
"""
Tests for data ingestion from an instrument. It is basically the
test_poll from test_instrument_agent (as of 7/23/12) with
the additional preparation of the ingestion management service and the
verification that the published granules are persisted.
"""
def setUp(self):
self.resource_registry = ResourceRegistryServiceClient()
self.ingestion_management = IngestionManagementServiceClient()
self._support = DriverIntegrationTestSupport(DRV_MOD,
DRV_CLS,
DEV_ADDR,
DEV_PORT,
DELIM,
WORK_DIR)
# Start port agent, add stop to cleanup.
self._pagent = None
self._start_pagent()
self.addCleanup(self._support.stop_pagent)
# Start container.
self._start_container()
# Bring up services in a deploy file (no need to message)
self.container.start_rel_from_url('res/deploy/r2deploy.yml')
# Start data suscribers, add stop to cleanup.
# Define stream_config.
self._no_samples = None
self._async_data_result = AsyncResult()
self._data_greenlets = []
self._stream_config = {}
self._samples_received = []
self._data_subscribers = []
self._start_data_subscribers()
self.addCleanup(self._stop_data_subscribers)
self.prepare_ingestion()
# Start event subscribers, add stop to cleanup.
self._no_events = None
self._async_event_result = AsyncResult()
self._events_received = []
# Create agent config.
agent_config = {
'driver_config' : DVR_CONFIG,
'stream_config' : self._stream_config,
'agent' : {'resource_id': IA_RESOURCE_ID},
'test_mode' : True
}
# Start instrument agent.
self._ia_pid = None
log.debug("TestInstrumentDataIngestion.setup(): starting IA.")
container_client = ContainerAgentClient(node=self.container.node,
name=self.container.name)
self._ia_pid = container_client.spawn_process(name=IA_NAME,
module=IA_MOD,
cls=IA_CLS,
config=agent_config)
log.info('Agent pid=%s.', str(self._ia_pid))
# Start a resource agent client to talk with the instrument agent.
self._ia_client = None
self._ia_client = ResourceAgentClient(IA_RESOURCE_ID, process=FakeProcess())
log.info('Got ia client %s.', str(self._ia_client))
def _start_pagent(self):
"""
Construct and start the port agent.
"""
port = self._support.start_pagent()
# Configure driver to use port agent port number.
DVR_CONFIG['comms_config'] = {
'addr' : 'localhost',
'port' : port
}
def _start_data_subscribers(self):
"""
"""
# Create a pubsub client to create streams.
pubsub_client = PubsubManagementServiceClient(node=self.container.node)
# A callback for processing subscribed-to data.
def consume_data(message, headers):
log.info('Subscriber received data message: type(message)=%s.', str(type(message)))
log.info('Subscriber received data message: %s.', str(message))
self._samples_received.append(message)
if self._no_samples and self._no_samples == len(self._samples_received):
self._async_data_result.set()
# Create a stream subscriber registrar to create subscribers.
subscriber_registrar = StreamSubscriberRegistrar(process=self.container,
container=self.container)
# Create streams and subscriptions for each stream named in driver.
self._stream_config = {}
self._data_subscribers = []
for stream_name in PACKET_CONFIG:
stream_def = ctd_stream_definition(stream_id=None)
stream_def_id = pubsub_client.create_stream_definition(
container=stream_def)
stream_id = pubsub_client.create_stream(
name=stream_name,
stream_definition_id=stream_def_id,
original=True,
encoding='ION R2')
taxy = get_taxonomy(stream_name)
stream_config = dict(
id=stream_id,
taxonomy=taxy.dump()
)
self._stream_config[stream_name] = stream_config
# Create subscriptions for each stream.
exchange_name = '%s_queue' % stream_name
sub = subscriber_registrar.create_subscriber(exchange_name=exchange_name,
callback=consume_data)
self._listen(sub)
self._data_subscribers.append(sub)
query = StreamQuery(stream_ids=[stream_id])
sub_id = pubsub_client.create_subscription(
query=query, exchange_name=exchange_name, exchange_point='science_data')
pubsub_client.activate_subscription(sub_id)
def _listen(self, sub):
"""
Pass in a subscriber here, this will make it listen in a background greenlet.
"""
gl = spawn(sub.listen)
self._data_greenlets.append(gl)
sub._ready_event.wait(timeout=5)
return gl
def _stop_data_subscribers(self):
"""
Stop the data subscribers on cleanup.
"""
for sub in self._data_subscribers:
sub.stop()
for gl in self._data_greenlets:
gl.kill()
def assertRawSampleDict(self, val):
"""
Verify the value is a raw sample dictionary for the sbe37.
"""
#{'stream_name': 'raw', 'blob': ['20.8074,80.04590, 761.394, 33.5658, 1506.076, 01 Feb 2001, 01:01:00'], 'time': [1342392781.61211]}
self.assertTrue(isinstance(val, dict))
self.assertTrue(val.has_key('blob'))
self.assertTrue(val.has_key('time'))
blob = val['blob'][0]
time = val['time'][0]
self.assertTrue(isinstance(blob, str))
self.assertTrue(isinstance(time, float))
def assertParsedSampleDict(self, val):
"""
Verify the value is a parsed sample dictionary for the sbe37.
"""
#{'p': [-6.945], 'c': [0.08707], 't': [20.002], 'time': [1333752198.450622]}
self.assertTrue(isinstance(val, dict))
self.assertTrue(val.has_key('c'))
self.assertTrue(val.has_key('t'))
self.assertTrue(val.has_key('p'))
self.assertTrue(val.has_key('time'))
c = val['c'][0]
t = val['t'][0]
p = val['p'][0]
time = val['time'][0]
self.assertTrue(isinstance(c, float))
self.assertTrue(isinstance(t, float))
self.assertTrue(isinstance(p, float))
self.assertTrue(isinstance(time, float))
def assertSample(self, sample):
"""
Verify a sample retrieved from the sbe37, which is expected to be a
dict of dicts {'raw':raw_sample, 'parsed':parsed_sample}.
"""
self.assertTrue(isinstance(sample, dict))
raw_sample = sample['raw']
parsed_sample = sample['parsed']
self.assertParsedSampleDict(parsed_sample)
self.assertRawSampleDict(raw_sample)
def get_ingestion_config(self):
#
# From test_dm_end_2_end.py as of 7/23/12
#
#--------------------------------------------------------------------------------
# Grab the ingestion configuration from the resource registry
#--------------------------------------------------------------------------------
# The ingestion configuration should have been created by the bootstrap service
# which is configured through r2deploy.yml
ingest_configs, _ = self.resource_registry.find_resources(
restype=RT.IngestionConfiguration,id_only=True)
return ingest_configs[0]
def prepare_ingestion(self):
#
# Takes pieces from test_dm_end_2_end.py as of 7/23/12
#
# Get the ingestion configuration from the resource registry
self.ingest_config_id = ingest_config_id = self.get_ingestion_config()
# to keep the (stream_id, dataset_id) associated with each stream_name
self.dataset_ids = {}
for stream_name, stream_config in self._stream_config.iteritems():
stream_id = stream_config['id']
dataset_id = self.ingestion_management.persist_data_stream(
stream_id=stream_id,
ingestion_configuration_id=ingest_config_id)
log.info("persisting stream_name=%s (stream_id=%s): dataset_id=%s" % (
stream_name, stream_id, dataset_id))
self.assertTrue(self.ingestion_management.is_persisted(stream_id))
self.dataset_ids[stream_name] = (stream_id, dataset_id)
def verify_granules_persisted(self):
#
# takes elements from ingestion_management_test.py as of 7/23/12
#
ingest_config_id = self.ingest_config_id
for stream_name, (stream_id, dataset_id) in self.dataset_ids.iteritems():
assoc = self.resource_registry.find_associations(
subject=ingest_config_id, predicate=PRED.hasSubscription)
sub = self.resource_registry.read(assoc[0].o)
self.assertTrue(sub.is_active)
dataset = self.resource_registry.read(dataset_id)
self.assertIsInstance(dataset, DataSet)
log.info("Data persisted for stream_name=%s (stream_id=%s, "
"dataset_id=%s) dataset=%s" % (stream_name, stream_id, dataset_id, dataset))
def test_poll_and_verify_granules_persisted(self):
#
# As test_instrument_agent.py:TestInstrumentAgent.test_poll with
# verification that data are persisted.
#
self._test_poll()
self.verify_granules_persisted()
def _test_poll(self):
#
# Same as test_instrument_agent.py:TestInstrumentAgent.test_poll as of 7/23/12
#
cmd = AgentCommand(command='get_current_state')
retval = self._ia_client.execute_agent(cmd)
state = retval.result
self.assertEqual(state, InstrumentAgentState.UNINITIALIZED)
cmd = AgentCommand(command='initialize')
retval = self._ia_client.execute_agent(cmd)
cmd = AgentCommand(command='get_current_state')
retval = self._ia_client.execute_agent(cmd)
state = retval.result
self.assertEqual(state, InstrumentAgentState.INACTIVE)
cmd = AgentCommand(command='go_active')
retval = self._ia_client.execute_agent(cmd)
cmd = AgentCommand(command='get_current_state')
retval = self._ia_client.execute_agent(cmd)
state = retval.result
self.assertEqual(state, InstrumentAgentState.IDLE)
cmd = AgentCommand(command='run')
retval = self._ia_client.execute_agent(cmd)
cmd = AgentCommand(command='get_current_state')
retval = self._ia_client.execute_agent(cmd)
state = retval.result
self.assertEqual(state, InstrumentAgentState.OBSERVATORY)
# Lets call acquire_sample 3 times, so we should get 6 samples =
# 3 raw samples + 3 parsed samples
self._no_samples = 6
# Poll for a few samples.
cmd = AgentCommand(command='acquire_sample')
reply = self._ia_client.execute(cmd)
log.debug("acquire_sample reply.result=%s" % reply.result)
self.assertSample(reply.result)
cmd = AgentCommand(command='acquire_sample')
reply = self._ia_client.execute(cmd)
self.assertSample(reply.result)
cmd = AgentCommand(command='acquire_sample')
reply = self._ia_client.execute(cmd)
self.assertSample(reply.result)
# Assert we got 6 samples.
self._async_data_result.get(timeout=10)
self.assertEquals(len(self._samples_received), 6)
cmd = AgentCommand(command='reset')
retval = self._ia_client.execute_agent(cmd)
cmd = AgentCommand(command='get_current_state')
retval = self._ia_client.execute_agent(cmd)
state = retval.result
self.assertEqual(state, InstrumentAgentState.UNINITIALIZED)
class TestResourceRegistry(IonIntegrationTestCase):
def setUp(self):
# Start container
self._start_container()
self.container.start_rel_from_url("res/deploy/r2coi.yml")
# Now create client to bank service
self.resource_registry_service = ResourceRegistryServiceClient(node=self.container.node)
def test_crud(self):
# Some quick registry tests
# Can't call new with fields that aren't defined in the object's schema
with self.assertRaises(TypeError) as cm:
IonObject("UserInfo", name="name", foo="bar")
self.assertTrue(cm.exception.message == "__init__() got an unexpected keyword argument 'foo'")
# Can't call new with fields that aren't defined in the object's schema
with self.assertRaises(TypeError) as cm:
IonObject("UserInfo", {"name": "name", "foo": "bar"})
self.assertTrue(cm.exception.message == "__init__() got an unexpected keyword argument 'foo'")
# Can't call new with fields that aren't defined in the object's schema
with self.assertRaises(TypeError) as cm:
IonObject("UserInfo", {"name": "name"}, foo="bar")
self.assertTrue(cm.exception.message == "__init__() got an unexpected keyword argument 'foo'")
# Instantiate an object
obj = IonObject("UserInfo", name="name")
# Can set attributes that aren't in the object's schema
with self.assertRaises(AttributeError) as cm:
setattr(obj, "foo", "bar")
self.assertTrue(cm.exception.message == "'UserInfo' object has no attribute 'foo'")
# Cam't call update with object that hasn't been persisted
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.update(obj)
self.assertTrue(cm.exception.message.startswith("Object does not have required '_id' or '_rev' attribute"))
# Persist object and read it back
obj_id, obj_rev = self.resource_registry_service.create(obj)
read_obj = self.resource_registry_service.read(obj_id)
# Cannot create object with _id and _rev fields pre-set
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.create(read_obj)
self.assertTrue(cm.exception.message.startswith("Doc must not have '_id'"))
# Update object
read_obj.name = "John Doe"
self.resource_registry_service.update(read_obj)
# Update should fail with revision mismatch
with self.assertRaises(Conflict) as cm:
self.resource_registry_service.update(read_obj)
self.assertTrue(cm.exception.message.startswith("Object not based on most current version"))
# Re-read and update object
read_obj = self.resource_registry_service.read(obj_id)
self.resource_registry_service.update(read_obj)
# Delete object
self.resource_registry_service.delete(obj_id)
# Make sure read, update and delete report error
with self.assertRaises(NotFound) as cm:
self.resource_registry_service.read(obj_id)
self.assertTrue(cm.exception.message.startswith("Object with id"))
with self.assertRaises(NotFound) as cm:
self.resource_registry_service.update(read_obj)
self.assertTrue(cm.exception.message.startswith("Object with id"))
with self.assertRaises(NotFound) as cm:
self.resource_registry_service.delete(obj_id)
self.assertTrue(cm.exception.message.startswith("Object with id"))
# Owner creation tests
user = IonObject("ActorIdentity", name="user")
uid, _ = self.resource_registry_service.create(user)
inst = IonObject("InstrumentDevice", name="instrument")
iid, _ = self.resource_registry_service.create(inst, headers={"ion-actor-id": str(uid)})
ids, _ = self.resource_registry_service.find_objects(iid, PRED.hasOwner, RT.ActorIdentity, id_only=True)
self.assertEquals(len(ids), 1)
assoc = self.resource_registry_service.read(ids[0])
self.resource_registry_service.delete(iid)
with self.assertRaises(NotFound) as ex:
assoc = self.resource_registry_service.read(iid)
def test_lifecycle(self):
att = IonObject("InstrumentDevice", name="mine", description="desc")
rid, rev = self.resource_registry_service.create(att)
att1 = self.resource_registry_service.read(rid)
self.assertEquals(att1.name, att.name)
self.assertEquals(att1.lcstate, LCS.DRAFT_PRIVATE)
new_state = self.resource_registry_service.execute_lifecycle_transition(rid, LCE.PLAN)
self.assertEquals(new_state, LCS.PLANNED_PRIVATE)
att2 = self.resource_registry_service.read(rid)
self.assertEquals(att2.lcstate, LCS.PLANNED_PRIVATE)
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.execute_lifecycle_transition(rid, LCE.UNANNOUNCE)
self.assertTrue(
"type=InstrumentDevice, lcstate=PLANNED_PRIVATE has no transition for event unannounce"
in cm.exception.message
)
new_state = self.resource_registry_service.execute_lifecycle_transition(rid, LCE.DEVELOP)
self.assertEquals(new_state, LCS.DEVELOPED_PRIVATE)
self.assertRaises(
iex.BadRequest,
self.resource_registry_service.execute_lifecycle_transition,
resource_id=rid,
transition_event="NONE##",
)
self.resource_registry_service.set_lifecycle_state(rid, LCS.INTEGRATED_PRIVATE)
att1 = self.resource_registry_service.read(rid)
self.assertEquals(att1.lcstate, LCS.INTEGRATED_PRIVATE)
def test_association(self):
# Instantiate ActorIdentity object
actor_identity_obj = IonObject("ActorIdentity", name="name")
actor_identity_obj_id, actor_identity_obj_rev = self.resource_registry_service.create(actor_identity_obj)
read_actor_identity_obj = self.resource_registry_service.read(actor_identity_obj_id)
# Instantiate UserInfo object
user_info_obj = IonObject("UserInfo", name="name")
user_info_obj_id, user_info_obj_rev = self.resource_registry_service.create(user_info_obj)
read_user_info_obj = self.resource_registry_service.read(user_info_obj_id)
# Test create failures
with self.assertRaises(AttributeError) as cm:
self.resource_registry_service.create_association(actor_identity_obj_id, PRED.bogus, user_info_obj_id)
self.assertTrue(cm.exception.message == "bogus")
# Predicate not provided
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.create_association(actor_identity_obj_id, None, user_info_obj_id)
self.assertTrue(cm.exception.message == "Association must have all elements set")
# Bad association type
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.create_association(
actor_identity_obj_id, PRED.hasInfo, user_info_obj_id, "bogustype"
)
self.assertTrue(cm.exception.message == "Unsupported assoc_type: bogustype")
# Subject id or object not provided
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.create_association(None, PRED.hasInfo, user_info_obj_id)
self.assertTrue(cm.exception.message == "Association must have all elements set")
# Object id or object not provided
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.create_association(actor_identity_obj_id, PRED.hasInfo, None)
self.assertTrue(cm.exception.message == "Association must have all elements set")
# Bad subject id
with self.assertRaises(NotFound) as cm:
self.resource_registry_service.create_association("bogus", PRED.hasInfo, user_info_obj_id)
self.assertTrue(cm.exception.message == "Object with id bogus does not exist.")
# Bad object id
with self.assertRaises(NotFound) as cm:
self.resource_registry_service.create_association(actor_identity_obj_id, PRED.hasInfo, "bogus")
self.assertTrue(cm.exception.message == "Object with id bogus does not exist.")
# _id missing from subject
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.create_association(actor_identity_obj, PRED.hasInfo, user_info_obj_id)
self.assertTrue(cm.exception.message == "Subject id or rev not available")
# _id missing from object
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.create_association(actor_identity_obj_id, PRED.hasInfo, user_info_obj)
self.assertTrue(cm.exception.message == "Object id or rev not available")
# Wrong subject type
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.create_association(user_info_obj_id, PRED.hasInfo, user_info_obj_id)
self.assertTrue(cm.exception.message == "Illegal subject type UserInfo for predicate hasInfo")
# Wrong object type
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.create_association(
actor_identity_obj_id, PRED.hasInfo, actor_identity_obj_id
)
self.assertTrue(cm.exception.message == "Illegal object type ActorIdentity for predicate hasInfo")
# Create two different association types between the same subject and predicate
assoc_id1, assoc_rev1 = self.resource_registry_service.create_association(
actor_identity_obj_id, PRED.hasInfo, user_info_obj_id
)
# Read object, subject
res_obj1 = self.resource_registry_service.read_object(actor_identity_obj_id, PRED.hasInfo, RT.UserInfo)
self.assertEquals(res_obj1._id, user_info_obj_id)
res_obj1 = self.resource_registry_service.read_object(
actor_identity_obj_id, PRED.hasInfo, RT.UserInfo, id_only=True
)
self.assertEquals(res_obj1, user_info_obj_id)
res_obj2 = self.resource_registry_service.read_subject(RT.ActorIdentity, PRED.hasInfo, user_info_obj_id)
self.assertEquals(res_obj2._id, actor_identity_obj_id)
res_obj2 = self.resource_registry_service.read_subject(
RT.ActorIdentity, PRED.hasInfo, user_info_obj_id, id_only=True
)
self.assertEquals(res_obj2, actor_identity_obj_id)
# Create a similar association to a specific revision
# TODO: This is not a supported case so far
assoc_id2, assoc_rev2 = self.resource_registry_service.create_association(
actor_identity_obj_id, PRED.hasInfo, user_info_obj_id, "H2R"
)
# Search for associations (good cases)
ret1 = self.resource_registry_service.find_associations(actor_identity_obj_id, PRED.hasInfo, user_info_obj_id)
ret2 = self.resource_registry_service.find_associations(actor_identity_obj_id, PRED.hasInfo)
ret3 = self.resource_registry_service.find_associations(None, PRED.hasInfo)
self.assertTrue(len(ret1) == len(ret2) == len(ret3))
self.assertTrue(ret1[0]._id == ret2[0]._id == ret3[0]._id)
ret1 = self.resource_registry_service.find_associations(
actor_identity_obj_id, PRED.hasInfo, user_info_obj_id, None, False
)
ret2 = self.resource_registry_service.find_associations(actor_identity_obj_id, PRED.hasInfo, id_only=False)
ret3 = self.resource_registry_service.find_associations(predicate=PRED.hasInfo, id_only=False)
self.assertTrue(ret1 == ret2 == ret3)
# Search for associations (good cases)
ret1 = self.resource_registry_service.find_associations(
read_actor_identity_obj, PRED.hasInfo, read_user_info_obj
)
ret2 = self.resource_registry_service.find_associations(read_actor_identity_obj, PRED.hasInfo)
ret3 = self.resource_registry_service.find_associations(None, PRED.hasInfo)
self.assertTrue(len(ret1) == len(ret2) == len(ret3))
self.assertTrue(ret1[0]._id == ret2[0]._id == ret3[0]._id)
ret1 = self.resource_registry_service.find_associations(
actor_identity_obj_id, PRED.hasInfo, read_user_info_obj, None, True
)
ret2 = self.resource_registry_service.find_associations(actor_identity_obj_id, PRED.hasInfo, id_only=True)
ret3 = self.resource_registry_service.find_associations(predicate=PRED.hasInfo, id_only=True)
self.assertTrue(ret1 == ret2 == ret3)
# Search for associations (bad cases)
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.find_associations(None, None, None)
self.assertTrue(cm.exception.message == "Illegal parameters")
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.find_associations(actor_identity_obj_id, None, None)
self.assertTrue(cm.exception.message == "Illegal parameters")
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.find_associations(None, None, user_info_obj_id)
self.assertTrue(cm.exception.message == "Illegal parameters")
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.find_associations(actor_identity_obj, None, user_info_obj_id)
self.assertTrue(cm.exception.message == "Object id not available in subject")
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.find_associations(actor_identity_obj_id, None, user_info_obj)
self.assertTrue(cm.exception.message == "Object id not available in object")
# Find subjects (good cases)
subj_ret1 = self.resource_registry_service.find_subjects(RT.ActorIdentity, PRED.hasInfo, user_info_obj_id, True)
subj_ret2 = self.resource_registry_service.find_subjects(
RT.ActorIdentity, PRED.hasInfo, read_user_info_obj, True
)
self.assertTrue(len(subj_ret1) == len(subj_ret2))
self.assertTrue(subj_ret1[0] == subj_ret2[0])
self.assertTrue(subj_ret1[1][0]._id == subj_ret2[1][0]._id)
subj_ret3 = self.resource_registry_service.find_subjects(None, PRED.hasInfo, user_info_obj_id, True)
subj_ret4 = self.resource_registry_service.find_subjects(None, None, read_user_info_obj, True)
self.assertTrue(len(subj_ret3) == len(subj_ret4))
self.assertTrue(subj_ret3[0] == subj_ret4[0])
self.assertTrue(subj_ret3[1][0]._id == subj_ret4[1][0]._id)
subj_ret5 = self.resource_registry_service.find_subjects(None, PRED.hasInfo, user_info_obj_id, False)
subj_ret6 = self.resource_registry_service.find_subjects(None, None, read_user_info_obj, False)
self.assertTrue(len(subj_ret5) == len(subj_ret6))
self.assertTrue(subj_ret5[0][0]._id == subj_ret6[0][0]._id)
self.assertTrue(subj_ret5[1][0]._id == subj_ret6[1][0]._id)
# Find subjects (bad cases)
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.find_subjects(None, None, None)
self.assertTrue(cm.exception.message == "Must provide object")
with self.assertRaises(AttributeError) as cm:
self.resource_registry_service.find_subjects(RT.UserCredentials, PRED.bogus, user_info_obj_id, True)
self.assertTrue(cm.exception.message == "bogus")
ret = self.resource_registry_service.find_subjects(RT.UserInfo, PRED.hasCredentials, user_info_obj_id, True)
self.assertTrue(len(ret[0]) == 0)
ret = self.resource_registry_service.find_subjects(RT.UserCredentials, PRED.hasInfo, user_info_obj_id, True)
self.assertTrue(len(ret[0]) == 0)
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.find_subjects(RT.UserCredentials, PRED.hasInfo, user_info_obj, True)
self.assertTrue(cm.exception.message == "Object id not available in object")
# Find objects (good cases)
subj_ret1 = self.resource_registry_service.find_objects(actor_identity_obj_id, PRED.hasInfo, RT.UserInfo, True)
subj_ret2 = self.resource_registry_service.find_objects(
read_actor_identity_obj, PRED.hasInfo, RT.UserInfo, True
)
self.assertTrue(len(subj_ret1) == len(subj_ret2))
self.assertTrue(subj_ret1[0] == subj_ret2[0])
self.assertTrue(subj_ret1[1][0]._id == subj_ret2[1][0]._id)
subj_ret3 = self.resource_registry_service.find_objects(actor_identity_obj_id, PRED.hasInfo, None, True)
subj_ret4 = self.resource_registry_service.find_objects(actor_identity_obj_id, None, None, True)
self.assertTrue(len(subj_ret3) == len(subj_ret4))
self.assertTrue(subj_ret3[0] == subj_ret4[0])
self.assertTrue(subj_ret3[1][0]._id == subj_ret4[1][0]._id)
subj_ret5 = self.resource_registry_service.find_objects(actor_identity_obj_id, PRED.hasInfo, None, False)
subj_ret6 = self.resource_registry_service.find_objects(read_actor_identity_obj, None, None, False)
self.assertTrue(len(subj_ret5) == len(subj_ret6))
self.assertTrue(subj_ret5[0][0]._id == subj_ret6[0][0]._id)
self.assertTrue(subj_ret5[1][0]._id == subj_ret6[1][0]._id)
# Find objects (bad cases)
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.find_objects(None, None, None)
self.assertTrue(cm.exception.message == "Must provide subject")
with self.assertRaises(AttributeError) as cm:
self.resource_registry_service.find_objects(actor_identity_obj_id, PRED.bogus, RT.UserCredentials, True)
self.assertTrue(cm.exception.message == "bogus")
ret = self.resource_registry_service.find_objects(
actor_identity_obj_id, PRED.hasCredentials, RT.ActorIdentity, True
)
self.assertTrue(len(ret[0]) == 0)
ret = self.resource_registry_service.find_objects(actor_identity_obj_id, PRED.hasInfo, RT.UserCredentials, True)
self.assertTrue(len(ret[0]) == 0)
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.find_objects(actor_identity_obj, PRED.hasInfo, RT.UserInfo, True)
self.assertTrue(cm.exception.message == "Object id not available in subject")
# Get association (bad cases)
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.get_association(None, None, None)
self.assertTrue(cm.exception.message == "Illegal parameters")
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.get_association(actor_identity_obj_id, None, None)
self.assertTrue(cm.exception.message == "Illegal parameters")
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.get_association(None, None, user_info_obj_id)
self.assertTrue(cm.exception.message == "Illegal parameters")
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.get_association(actor_identity_obj, None, user_info_obj_id)
self.assertTrue(cm.exception.message == "Object id not available in subject")
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.get_association(actor_identity_obj_id, None, user_info_obj)
self.assertTrue(cm.exception.message == "Object id not available in object")
# Delete one of the associations
self.resource_registry_service.delete_association(assoc_id2)
assoc = self.resource_registry_service.get_association(actor_identity_obj_id, PRED.hasInfo, user_info_obj_id)
self.assertTrue(assoc._id == assoc_id1)
# Delete (bad cases)
with self.assertRaises(NotFound) as cm:
self.resource_registry_service.delete_association("bogus")
self.assertTrue(cm.exception.message == "Object with id bogus does not exist.")
# Delete other association
self.resource_registry_service.delete_association(assoc_id1)
# Delete resources
self.resource_registry_service.delete(actor_identity_obj_id)
self.resource_registry_service.delete(user_info_obj_id)
def test_find_resources(self):
with self.assertRaises(BadRequest) as cm:
self.resource_registry_service.find_resources(RT.UserInfo, LCS.DRAFT, "name", False)
self.assertTrue(cm.exception.message == "find by name does not support lcstate")
ret = self.resource_registry_service.find_resources(RT.UserInfo, None, "name", False)
self.assertTrue(len(ret[0]) == 0)
# Instantiate an object
obj = IonObject("InstrumentDevice", name="name")
# Persist object and read it back
obj_id, obj_rev = self.resource_registry_service.create(obj)
read_obj = self.resource_registry_service.read(obj_id)
ret = self.resource_registry_service.find_resources(RT.InstrumentDevice, None, "name", False)
self.assertTrue(len(ret[0]) == 1)
self.assertTrue(ret[0][0]._id == read_obj._id)
ret = self.resource_registry_service.find_resources(RT.InstrumentDevice, LCS.DRAFT, None, False)
self.assertTrue(len(ret[0]) == 1)
self.assertTrue(ret[0][0]._id == read_obj._id)
# @attr('INT', group='coirr1')
# class TestResourceRegistry1(IonIntegrationTestCase):
#
# def setUp(self):
# # Start container
# self._start_container()
# self.container.start_rel_from_url('res/deploy/r2coi.yml')
#
# # Now create client to bank service
# self.resource_registry_service = ResourceRegistryServiceClient(node=self.container.node)
def test_attach(self):
binary = "\x89PNG\r\n\x1a\n\x00\x00\x00\rIHDR\x00\x00\x00\x10\x00\x00\x00\x10\x08\x03\x00\x00\x00(-\x0fS\x00\x00\x00\x03sBIT\x08\x08\x08\xdb\xe1O\xe0\x00\x00\x00~PLTEf3\x00\xfc\xf7\xe0\xee\xcc\x00\xd3\xa0\x00\xcc\x99\x00\xec\xcdc\x9fl\x00\xdd\xb2\x00\xff\xff\xff|I\x00\xf9\xdb\x00\xdd\xb5\x19\xd9\xad\x10\xb6\x83\x00\xf8\xd6\x00\xf2\xc5\x00\xd8\xab\x00n;\x00\xff\xcc\x00\xd6\xa4\t\xeb\xb8\x00\x83Q\x00\xadz\x00\xff\xde\x00\xff\xd6\x00\xd6\xa3\x00\xdf\xaf\x00\xde\xad\x10\xbc\x8e\x00\xec\xbe\x00\xec\xd4d\xff\xe3\x00tA\x00\xf6\xc4\x00\xf6\xce\x00\xa5u\x00\xde\xa5\x00\xf7\xbd\x00\xd6\xad\x08\xdd\xaf\x19\x8cR\x00\xea\xb7\x00\xee\xe9\xdf\xc5\x00\x00\x00\tpHYs\x00\x00\n\xf0\x00\x00\n\xf0\x01B\xac4\x98\x00\x00\x00\x1ctEXtSoftware\x00Adobe Fireworks CS4\x06\xb2\xd3\xa0\x00\x00\x00\x15tEXtCreation Time\x0029/4/09Oq\xfdE\x00\x00\x00\xadIDAT\x18\x95M\x8f\x8d\x0e\x820\x0c\x84;ZdC~f\x07\xb2\x11D\x86\x89\xe8\xfb\xbf\xa0+h\xe2\x97\\\xd2^\x93\xb6\x07:1\x9f)q\x9e\xa5\x06\xad\xd5\x13\x8b\xac,\xb3\x02\x9d\x12C\xa1-\xef;M\x08*\x19\xce\x0e?\x1a\xeb4\xcc\xd4\x0c\x831\x87V\xca\xa1\x1a\xd3\x08@\xe4\xbd\xb7\x15P;\xc8\xd4{\x91\xbf\x11\x90\xffg\xdd\x8di\xfa\xb6\x0bs2Z\xff\xe8yg2\xdc\x11T\x96\xc7\x05\xa5\xef\x96+\xa7\xa59E\xae\xe1\x84cm^1\xa6\xb3\xda\x85\xc8\xd8/\x17se\x0eN^'\x8c\xc7\x8e\x88\xa8\xf6p\x8e\xc2;\xc6.\xd0\x11.\x91o\x12\x7f\xcb\xa5\xfe\x00\x89]\x10:\xf5\x00\x0e\xbf\x00\x00\x00\x00IEND\xaeB`\x82"
# Owner creation tests
instrument = IonObject("InstrumentDevice", name="instrument")
iid, _ = self.resource_registry_service.create(instrument)
att = Attachment(content=binary, attachment_type=AttachmentType.BLOB)
aid1 = self.resource_registry_service.create_attachment(iid, att)
att1 = self.resource_registry_service.read_attachment(aid1)
self.assertEquals(binary, att1.content)
import base64
att = Attachment(content=base64.encodestring(binary), attachment_type=AttachmentType.ASCII)
aid2 = self.resource_registry_service.create_attachment(iid, att)
att1 = self.resource_registry_service.read_attachment(aid2)
self.assertEquals(binary, base64.decodestring(att1.content))
att_ids = self.resource_registry_service.find_attachments(iid, id_only=True)
self.assertEquals(att_ids, [aid1, aid2])
att_ids = self.resource_registry_service.find_attachments(iid, id_only=True, descending=True)
self.assertEquals(att_ids, [aid2, aid1])
att_ids = self.resource_registry_service.find_attachments(iid, id_only=True, descending=True, limit=1)
self.assertEquals(att_ids, [aid2])
atts = self.resource_registry_service.find_attachments(iid, id_only=False, limit=1)
self.assertEquals(atts[0].content, att1.content)
self.resource_registry_service.delete_attachment(aid1)
att_ids = self.resource_registry_service.find_attachments(iid, id_only=True)
self.assertEquals(att_ids, [aid2])
self.resource_registry_service.delete_attachment(aid2)
att_ids = self.resource_registry_service.find_attachments(iid, id_only=True)
self.assertEquals(att_ids, [])
class TestFindRelatedResources(IonIntegrationTestCase, ResourceHelper):
"""
assembly integration tests at the service level
"""
def setUp(self):
# Start container
self._start_container()
self.container.start_rel_from_url('res/deploy/r2deploy.yml')
self.IMS = InstrumentManagementServiceClient(node=self.container.node)
self.OMS = ObservatoryManagementServiceClient(node=self.container.node)
self.RR = ResourceRegistryServiceClient(node=self.container.node)
self.care = {}
self.dontcare = {}
self.realtype = {}
# @unittest.skip('this test just for debugging setup')
# def test_just_the_setup(self):
# return
def create_dummy_structure(self):
"""
Create two observatories.
- each observatory has 2 subsites
- each subsite has 2 more subsites
- each of those subsites has 2 platform sites
- each of those platform sites has a model and 2 sub- platform sites
- each of those sub- platform sites has a model, matching platform device, and 2 instrument sites
- each of those instrument sites has a model and matching instrument device
One of each resource type (observatory all the way down to instrument device/model) is what we "care" about
- it goes in the self.care dict
All the rest go in the self.dontcare dict
To manage subsite/platform multiplicity, we alias them in the dict... the proper hierarchy is:
Observatory-Site-Subsite-PlatformSite-SubPlatformSite-InstrumentSite
self.realtype[alias] gives the real resource type of an alias
"""
self.create_observatory(True)
self.create_observatory(False)
for rt in [
RT.Observatory, RT_SITE, RT.Subsite, RT.PlatformSite,
RT_SUBPLATFORMSITE, RT.PlatformDevice, RT.PlatformModel,
RT.InstrumentSite, RT.InstrumentDevice, RT.InstrumentModel
]:
self.assertIn(rt, self.care)
self.expected_associations = [
(RT.Observatory, PRED.hasSite, RT_SITE),
(RT.Site, PRED.hasSite, RT.Subsite),
(RT.Subsite, PRED.hasSite, RT.PlatformSite),
(RT.PlatformSite, PRED.hasSite, RT_SUBPLATFORMSITE),
(RT_SUBPLATFORMSITE, PRED.hasSite, RT.InstrumentSite),
(RT_SUBPLATFORMSITE, PRED.hasModel, RT.PlatformModel),
(RT_SUBPLATFORMSITE, PRED.hasDevice, RT.PlatformDevice),
(RT.PlatformDevice, PRED.hasModel, RT.PlatformModel),
(RT.InstrumentSite, PRED.hasModel, RT.InstrumentModel),
(RT.InstrumentSite, PRED.hasDevice, RT.InstrumentDevice),
(RT.InstrumentDevice, PRED.hasModel, RT.InstrumentModel)
]
log.info("Verifying created structure")
for (st, p, ot) in self.expected_associations:
rst = self.realtype[st]
rot = self.realtype[ot]
s = self.care[st]
o = self.care[ot]
log.debug("searching %s->%s->%s as %s->%s->%s" %
(st, p, ot, rst, p, rot))
log.debug(" - expecting %s %s" % (rot, o))
a = self.RR.find_associations(subject=s, predicate=p, object=o)
if not (0 < len(a) < 3):
a2 = self.RR.find_associations(subject=s, predicate=p)
a2content = [("(%s %s)" % (alt.ot, alt.o)) for alt in a2]
self.fail(
"Expected 1-2 associations for %s->%s->%s, got %s: %s" %
(st, p, ot, len(a2), a2content))
self.assertIn(o, [aa.o for aa in a])
log.info(
"CREATED STRUCTURE APPEARS CORRECT ==============================="
)
def simplify_assn_resource_ids(self, assn_list):
count = 0
lookup = {}
retval = []
for a in assn_list:
if not a.s in lookup:
lookup[a.s] = count
count += 1
if not a.o in lookup:
lookup[a.o] = count
count += 1
retval.append(
DotDict({
"s": lookup[a.s],
"st": a.st,
"p": a.p,
"o": lookup[a.o],
"ot": a.ot
}))
return retval
def describe_assn_graph(self, assn_list):
return [("%s %s -> %s -> %s %s" % (a.st, a.s, a.p, a.ot, a.o))
for a in assn_list]
#@unittest.skip('refactoring')
def test_related_resource_crawler(self):
"""
"""
self.create_dummy_structure()
r = RelatedResourcesCrawler()
# test the basic forward-backward searches
for (st, p, ot) in self.expected_associations:
rst = self.realtype[st]
rot = self.realtype[ot]
s = self.care[st]
o = self.care[ot]
test_sto_fn = r.generate_get_related_resources_fn(
self.RR, [rot], {p: (True, False)})
sto_crawl = test_sto_fn(s, 1) # depth of 1
if 2 < len(sto_crawl): # we get 2 because of care/dontcare
self.fail("got %s" % self.describe_assn_graph(
self.simplify_assn_resource_ids(sto_crawl)))
self.assertIn(o, [t.o for t in sto_crawl])
test_ots_fn = r.generate_get_related_resources_fn(
self.RR, [rst], {p: (False, True)})
ots_crawl = test_ots_fn(o, 1) # depth of 1
if 1 != len(ots_crawl):
self.fail("got %s" % self.describe_assn_graph(
self.simplify_assn_resource_ids(ots_crawl)))
# test a nontrivial lookup, in which we extract resources related to an instrument device
rw = []
pd = {}
# we want things related to an instrument device
rw.append(RT.PlatformModel)
rw.append(RT.InstrumentModel)
rw.append(RT.PlatformDevice)
rw.append(RT.InstrumentSite)
rw.append(RT.PlatformSite)
rw.append(RT.Subsite)
rw.append(RT.Observatory)
rw.append(RT.InstrumentDevice)
pd[PRED.hasModel] = (True, True)
pd[PRED.hasDevice] = (False, True)
pd[PRED.hasSite] = (False, True)
test_real_fn = r.generate_get_related_resources_fn(
self.RR, resource_whitelist=rw, predicate_dictionary=pd)
related = test_real_fn(self.care[RT.InstrumentDevice])
log.debug("========= Result is:")
for l in self.describe_assn_graph(
self.simplify_assn_resource_ids(related)):
log.debug(" %s", l)
# check that we only got things we care about
for a in related:
# special case for platform model, because we don't care about the top-level platform's model
# so it will blow up if we don't ignore it. if we got an extra platform model, we'd have an
# extra platform anyway... so this special case is safe.
if a.st != RT.PlatformModel:
self.assertIn(a.s, self.care.values(),
"%s %s not cared about" % (a.st, a.s))
if a.ot != RT.PlatformModel:
self.assertIn(a.o, self.care.values(),
"%s %s not cared about" % (a.ot, a.o))
def test_replay_integration(self):
'''
Test full DM Services Integration
'''
cc = self.container
### Every thing below here can be run as a script:
pubsub_management_service = PubsubManagementServiceClient(node=cc.node)
ingestion_management_service = IngestionManagementServiceClient(node=cc.node)
dataset_management_service = DatasetManagementServiceClient(node=cc.node)
data_retriever_service = DataRetrieverServiceClient(node=cc.node)
resource_registry_service = ResourceRegistryServiceClient(node=cc.node)
#------------------------------------------------------------------------------------------------------
# Datastore name
#------------------------------------------------------------------------------------------------------
datastore_name = 'test_replay_integration'
#------------------------------------------------------------------------------------------------------
# Spawn process
#------------------------------------------------------------------------------------------------------
pid = cc.spawn_process(name='dummy_process_for_test',
module='pyon.ion.process',
cls='SimpleProcess',
config={})
dummy_process = cc.proc_manager.procs[pid]
#------------------------------------------------------------------------------------------------------
# Set up subscriber
#------------------------------------------------------------------------------------------------------
# Normally the user does not see or create the publisher, this is part of the containers business.
# For the test we need to set it up explicitly
publisher_registrar = StreamPublisherRegistrar(process=dummy_process, node=cc.node)
subscriber_registrar = StreamSubscriberRegistrar(process=cc, node=cc.node)
#------------------------------------------------------------------------------------------------------
# Set up ingestion
#------------------------------------------------------------------------------------------------------
# Configure ingestion using eight workers, ingesting to test_dm_integration datastore with the SCIDATA profile
ingestion_configuration_id = ingestion_management_service.create_ingestion_configuration(
exchange_point_id='science_data',
couch_storage=CouchStorage(datastore_name=datastore_name, datastore_profile='SCIDATA'),
hdf_storage=HdfStorage(),
number_of_workers=1,
)
ingestion_management_service.activate_ingestion_configuration(
ingestion_configuration_id=ingestion_configuration_id)
#------------------------------------------------------------------------------------------------------
# Grab the transforms acting as ingestion workers
#------------------------------------------------------------------------------------------------------
transforms = [resource_registry_service.read(assoc.o)
for assoc in resource_registry_service.find_associations(ingestion_configuration_id, PRED.hasTransform)]
proc_1 = cc.proc_manager.procs[transforms[0].process_id]
log.info("PROCESS 1: %s" % str(proc_1))
#------------------------------------------------------------------------------------------------------
# Set up the test hooks for the gevent event AsyncResult object
#------------------------------------------------------------------------------------------------------
def ingestion_worker_received(message, headers):
ar.set(message)
proc_1.ingest_process_test_hook = ingestion_worker_received
#------------------------------------------------------------------------------------------------------
# Set up the producers (CTD Simulators)
#------------------------------------------------------------------------------------------------------
ctd_stream_def = ctd_stream_definition()
stream_def_id = pubsub_management_service.create_stream_definition(container=ctd_stream_def, name='Junk definition')
stream_id = pubsub_management_service.create_stream(stream_definition_id=stream_def_id)
#------------------------------------------------------------------------------------------------------
# Set up the dataset config
#------------------------------------------------------------------------------------------------------
dataset_id = dataset_management_service.create_dataset(
stream_id=stream_id,
datastore_name=datastore_name,
view_name='datasets/stream_join_granule'
)
dataset_config_id = ingestion_management_service.create_dataset_configuration(
dataset_id = dataset_id,
archive_data = True,
archive_metadata = True,
ingestion_configuration_id = ingestion_configuration_id
)
#------------------------------------------------------------------------------------------------------
# Launch a ctd_publisher
#------------------------------------------------------------------------------------------------------
publisher = publisher_registrar.create_publisher(stream_id=stream_id)
#------------------------------------------------------------------------
# Create a packet and publish it
#------------------------------------------------------------------------
ctd_packet = _create_packet(stream_id)
published_hdfstring = ctd_packet.identifiables['ctd_data'].values
publisher.publish(ctd_packet)
#------------------------------------------------------------------------------------------------------
# Catch what the ingestion worker gets! Assert it is the same packet that was published!
#------------------------------------------------------------------------------------------------------
packet = ar.get(timeout=2)
#------------------------------------------------------------------------------------------------------
# Create subscriber to listen to the replays
#------------------------------------------------------------------------------------------------------
replay_id, replay_stream_id = data_retriever_service.define_replay(dataset_id)
query = StreamQuery(stream_ids=[replay_stream_id])
subscription_id = pubsub_management_service.create_subscription(query = query, exchange_name='replay_capture_point' ,name = 'replay_capture_point')
# It is not required or even generally a good idea to use the subscription resource name as the queue name, but it makes things simple here
# Normally the container creates and starts subscribers for you when a transform process is spawned
subscriber = subscriber_registrar.create_subscriber(exchange_name='replay_capture_point', callback=_subscriber_call_back)
subscriber.start()
pubsub_management_service.activate_subscription(subscription_id)
#------------------------------------------------------------------------------------------------------
# Start the replay
#------------------------------------------------------------------------------------------------------
data_retriever_service.start_replay(replay_id)
#------------------------------------------------------------------------------------------------------
# Get the hdf string from the captured stream in the replay
#------------------------------------------------------------------------------------------------------
retrieved_hdf_string = ar2.get(timeout=2)
### Non scriptable portion of the test
#------------------------------------------------------------------------------------------------------
# Assert that it matches the message we sent
#------------------------------------------------------------------------------------------------------
self.assertEquals(packet.identifiables['stream_encoding'].sha1, ctd_packet.identifiables['stream_encoding'].sha1)
self.assertEquals(retrieved_hdf_string, published_hdfstring)
class PubsubManagementIntTest(IonIntegrationTestCase):
def setUp(self):
self._start_container()
self.container.start_rel_from_url('res/deploy/r2deploy.yml')
self.pubsub_management = PubsubManagementServiceClient()
self.resource_registry = ResourceRegistryServiceClient()
self.dataset_management = DatasetManagementServiceClient()
self.queue_cleanup = list()
self.exchange_cleanup = list()
def tearDown(self):
for queue in self.queue_cleanup:
xn = self.container.ex_manager.create_xn_queue(queue)
xn.delete()
for exchange in self.exchange_cleanup:
xp = self.container.ex_manager.create_xp(exchange)
xp.delete()
def test_stream_def_crud(self):
# Test Creation
pdict = DatasetManagementService.get_parameter_dictionary_by_name('ctd_parsed_param_dict')
stream_definition_id = self.pubsub_management.create_stream_definition('ctd parsed', parameter_dictionary_id=pdict.identifier)
# Make sure there is an assoc
self.assertTrue(self.resource_registry.find_associations(subject=stream_definition_id, predicate=PRED.hasParameterDictionary, object=pdict.identifier, id_only=True))
# Test Reading
stream_definition = self.pubsub_management.read_stream_definition(stream_definition_id)
self.assertTrue(PubsubManagementService._compare_pdicts(pdict.dump(), stream_definition.parameter_dictionary))
# Test Deleting
self.pubsub_management.delete_stream_definition(stream_definition_id)
self.assertFalse(self.resource_registry.find_associations(subject=stream_definition_id, predicate=PRED.hasParameterDictionary, object=pdict.identifier, id_only=True))
# Test comparisons
in_stream_definition_id = self.pubsub_management.create_stream_definition('L0 products', parameter_dictionary=pdict.identifier, available_fields=['time','temp','conductivity','pressure'])
self.addCleanup(self.pubsub_management.delete_stream_definition, in_stream_definition_id)
out_stream_definition_id = in_stream_definition_id
self.assertTrue(self.pubsub_management.compare_stream_definition(in_stream_definition_id, out_stream_definition_id))
self.assertTrue(self.pubsub_management.compatible_stream_definitions(in_stream_definition_id, out_stream_definition_id))
out_stream_definition_id = self.pubsub_management.create_stream_definition('L2 Products', parameter_dictionary=pdict.identifier, available_fields=['time','salinity','density'])
self.addCleanup(self.pubsub_management.delete_stream_definition, out_stream_definition_id)
self.assertFalse(self.pubsub_management.compare_stream_definition(in_stream_definition_id, out_stream_definition_id))
self.assertTrue(self.pubsub_management.compatible_stream_definitions(in_stream_definition_id, out_stream_definition_id))
def publish_on_stream(self, stream_id, msg):
stream = self.pubsub_management.read_stream(stream_id)
stream_route = stream.stream_route
publisher = StandaloneStreamPublisher(stream_id=stream_id, stream_route=stream_route)
publisher.publish(msg)
def test_stream_crud(self):
stream_def_id = self.pubsub_management.create_stream_definition('test_definition', stream_type='stream')
topic_id = self.pubsub_management.create_topic(name='test_topic', exchange_point='test_exchange')
self.exchange_cleanup.append('test_exchange')
topic2_id = self.pubsub_management.create_topic(name='another_topic', exchange_point='outside')
stream_id, route = self.pubsub_management.create_stream(name='test_stream', topic_ids=[topic_id, topic2_id], exchange_point='test_exchange', stream_definition_id=stream_def_id)
topics, assocs = self.resource_registry.find_objects(subject=stream_id, predicate=PRED.hasTopic, id_only=True)
self.assertEquals(topics,[topic_id])
defs, assocs = self.resource_registry.find_objects(subject=stream_id, predicate=PRED.hasStreamDefinition, id_only=True)
self.assertTrue(len(defs))
stream = self.pubsub_management.read_stream(stream_id)
self.assertEquals(stream.name,'test_stream')
self.pubsub_management.delete_stream(stream_id)
with self.assertRaises(NotFound):
self.pubsub_management.read_stream(stream_id)
defs, assocs = self.resource_registry.find_objects(subject=stream_id, predicate=PRED.hasStreamDefinition, id_only=True)
self.assertFalse(len(defs))
topics, assocs = self.resource_registry.find_objects(subject=stream_id, predicate=PRED.hasTopic, id_only=True)
self.assertFalse(len(topics))
self.pubsub_management.delete_topic(topic_id)
self.pubsub_management.delete_topic(topic2_id)
self.pubsub_management.delete_stream_definition(stream_def_id)
def test_subscription_crud(self):
stream_def_id = self.pubsub_management.create_stream_definition('test_definition', stream_type='stream')
stream_id, route = self.pubsub_management.create_stream(name='test_stream', exchange_point='test_exchange', stream_definition_id=stream_def_id)
subscription_id = self.pubsub_management.create_subscription(name='test subscription', stream_ids=[stream_id], exchange_name='test_queue')
self.exchange_cleanup.append('test_exchange')
subs, assocs = self.resource_registry.find_objects(subject=subscription_id,predicate=PRED.hasStream,id_only=True)
self.assertEquals(subs,[stream_id])
res, _ = self.resource_registry.find_resources(restype=RT.ExchangeName, name='test_queue', id_only=True)
self.assertEquals(len(res),1)
subs, assocs = self.resource_registry.find_subjects(object=subscription_id, predicate=PRED.hasSubscription, id_only=True)
self.assertEquals(subs[0], res[0])
subscription = self.pubsub_management.read_subscription(subscription_id)
self.assertEquals(subscription.exchange_name, 'test_queue')
self.pubsub_management.delete_subscription(subscription_id)
subs, assocs = self.resource_registry.find_objects(subject=subscription_id,predicate=PRED.hasStream,id_only=True)
self.assertFalse(len(subs))
subs, assocs = self.resource_registry.find_subjects(object=subscription_id, predicate=PRED.hasSubscription, id_only=True)
self.assertFalse(len(subs))
self.pubsub_management.delete_stream(stream_id)
self.pubsub_management.delete_stream_definition(stream_def_id)
def test_move_before_activate(self):
stream_id, route = self.pubsub_management.create_stream(name='test_stream', exchange_point='test_xp')
#--------------------------------------------------------------------------------
# Test moving before activate
#--------------------------------------------------------------------------------
subscription_id = self.pubsub_management.create_subscription('first_queue', stream_ids=[stream_id])
xn_ids, _ = self.resource_registry.find_resources(restype=RT.ExchangeName, name='first_queue', id_only=True)
subjects, _ = self.resource_registry.find_subjects(object=subscription_id, predicate=PRED.hasSubscription, id_only=True)
self.assertEquals(xn_ids[0], subjects[0])
self.pubsub_management.move_subscription(subscription_id, exchange_name='second_queue')
xn_ids, _ = self.resource_registry.find_resources(restype=RT.ExchangeName, name='second_queue', id_only=True)
subjects, _ = self.resource_registry.find_subjects(object=subscription_id, predicate=PRED.hasSubscription, id_only=True)
self.assertEquals(len(subjects),1)
self.assertEquals(subjects[0], xn_ids[0])
self.pubsub_management.delete_subscription(subscription_id)
self.pubsub_management.delete_stream(stream_id)
def test_move_activated_subscription(self):
stream_id, route = self.pubsub_management.create_stream(name='test_stream', exchange_point='test_xp')
#--------------------------------------------------------------------------------
# Test moving after activate
#--------------------------------------------------------------------------------
subscription_id = self.pubsub_management.create_subscription('first_queue', stream_ids=[stream_id])
self.pubsub_management.activate_subscription(subscription_id)
xn_ids, _ = self.resource_registry.find_resources(restype=RT.ExchangeName, name='first_queue', id_only=True)
subjects, _ = self.resource_registry.find_subjects(object=subscription_id, predicate=PRED.hasSubscription, id_only=True)
self.assertEquals(xn_ids[0], subjects[0])
self.verified = Event()
def verify(m,r,s):
self.assertEquals(m,'verified')
self.verified.set()
subscriber = StandaloneStreamSubscriber('second_queue', verify)
subscriber.start()
self.pubsub_management.move_subscription(subscription_id, exchange_name='second_queue')
xn_ids, _ = self.resource_registry.find_resources(restype=RT.ExchangeName, name='second_queue', id_only=True)
subjects, _ = self.resource_registry.find_subjects(object=subscription_id, predicate=PRED.hasSubscription, id_only=True)
self.assertEquals(len(subjects),1)
self.assertEquals(subjects[0], xn_ids[0])
publisher = StandaloneStreamPublisher(stream_id, route)
publisher.publish('verified')
self.assertTrue(self.verified.wait(2))
self.pubsub_management.deactivate_subscription(subscription_id)
self.pubsub_management.delete_subscription(subscription_id)
self.pubsub_management.delete_stream(stream_id)
def test_queue_cleanup(self):
stream_id, route = self.pubsub_management.create_stream('test_stream','xp1')
xn_objs, _ = self.resource_registry.find_resources(restype=RT.ExchangeName, name='queue1')
for xn_obj in xn_objs:
xn = self.container.ex_manager.create_xn_queue(xn_obj.name)
xn.delete()
subscription_id = self.pubsub_management.create_subscription('queue1',stream_ids=[stream_id])
xn_ids, _ = self.resource_registry.find_resources(restype=RT.ExchangeName, name='queue1')
self.assertEquals(len(xn_ids),1)
self.pubsub_management.delete_subscription(subscription_id)
xn_ids, _ = self.resource_registry.find_resources(restype=RT.ExchangeName, name='queue1')
self.assertEquals(len(xn_ids),0)
def test_activation_and_deactivation(self):
stream_id, route = self.pubsub_management.create_stream('stream1','xp1')
subscription_id = self.pubsub_management.create_subscription('sub1', stream_ids=[stream_id])
self.check1 = Event()
def verifier(m,r,s):
self.check1.set()
subscriber = StandaloneStreamSubscriber('sub1',verifier)
subscriber.start()
publisher = StandaloneStreamPublisher(stream_id, route)
publisher.publish('should not receive')
self.assertFalse(self.check1.wait(0.25))
self.pubsub_management.activate_subscription(subscription_id)
publisher.publish('should receive')
self.assertTrue(self.check1.wait(2))
self.check1.clear()
self.assertFalse(self.check1.is_set())
self.pubsub_management.deactivate_subscription(subscription_id)
publisher.publish('should not receive')
self.assertFalse(self.check1.wait(0.5))
self.pubsub_management.activate_subscription(subscription_id)
publisher.publish('should receive')
self.assertTrue(self.check1.wait(2))
subscriber.stop()
self.pubsub_management.deactivate_subscription(subscription_id)
self.pubsub_management.delete_subscription(subscription_id)
self.pubsub_management.delete_stream(stream_id)
def test_topic_crud(self):
topic_id = self.pubsub_management.create_topic(name='test_topic', exchange_point='test_xp')
self.exchange_cleanup.append('test_xp')
topic = self.pubsub_management.read_topic(topic_id)
self.assertEquals(topic.name,'test_topic')
self.assertEquals(topic.exchange_point, 'test_xp')
self.pubsub_management.delete_topic(topic_id)
with self.assertRaises(NotFound):
self.pubsub_management.read_topic(topic_id)
def test_full_pubsub(self):
self.sub1_sat = Event()
self.sub2_sat = Event()
def subscriber1(m,r,s):
self.sub1_sat.set()
def subscriber2(m,r,s):
self.sub2_sat.set()
sub1 = StandaloneStreamSubscriber('sub1', subscriber1)
self.queue_cleanup.append(sub1.xn.queue)
sub1.start()
sub2 = StandaloneStreamSubscriber('sub2', subscriber2)
self.queue_cleanup.append(sub2.xn.queue)
sub2.start()
log_topic = self.pubsub_management.create_topic('instrument_logs', exchange_point='instruments')
science_topic = self.pubsub_management.create_topic('science_data', exchange_point='instruments')
events_topic = self.pubsub_management.create_topic('notifications', exchange_point='events')
log_stream, route = self.pubsub_management.create_stream('instrument1-logs', topic_ids=[log_topic], exchange_point='instruments')
ctd_stream, route = self.pubsub_management.create_stream('instrument1-ctd', topic_ids=[science_topic], exchange_point='instruments')
event_stream, route = self.pubsub_management.create_stream('notifications', topic_ids=[events_topic], exchange_point='events')
raw_stream, route = self.pubsub_management.create_stream('temp', exchange_point='global.data')
self.exchange_cleanup.extend(['instruments','events','global.data'])
subscription1 = self.pubsub_management.create_subscription('subscription1', stream_ids=[log_stream,event_stream], exchange_name='sub1')
subscription2 = self.pubsub_management.create_subscription('subscription2', exchange_points=['global.data'], stream_ids=[ctd_stream], exchange_name='sub2')
self.pubsub_management.activate_subscription(subscription1)
self.pubsub_management.activate_subscription(subscription2)
self.publish_on_stream(log_stream, 1)
self.assertTrue(self.sub1_sat.wait(4))
self.assertFalse(self.sub2_sat.is_set())
self.publish_on_stream(raw_stream,1)
self.assertTrue(self.sub1_sat.wait(4))
sub1.stop()
sub2.stop()
def test_topic_craziness(self):
self.msg_queue = Queue()
def subscriber1(m,r,s):
self.msg_queue.put(m)
sub1 = StandaloneStreamSubscriber('sub1', subscriber1)
self.queue_cleanup.append(sub1.xn.queue)
sub1.start()
topic1 = self.pubsub_management.create_topic('topic1', exchange_point='xp1')
topic2 = self.pubsub_management.create_topic('topic2', exchange_point='xp1', parent_topic_id=topic1)
topic3 = self.pubsub_management.create_topic('topic3', exchange_point='xp1', parent_topic_id=topic1)
topic4 = self.pubsub_management.create_topic('topic4', exchange_point='xp1', parent_topic_id=topic2)
topic5 = self.pubsub_management.create_topic('topic5', exchange_point='xp1', parent_topic_id=topic2)
topic6 = self.pubsub_management.create_topic('topic6', exchange_point='xp1', parent_topic_id=topic3)
topic7 = self.pubsub_management.create_topic('topic7', exchange_point='xp1', parent_topic_id=topic3)
# Tree 2
topic8 = self.pubsub_management.create_topic('topic8', exchange_point='xp2')
topic9 = self.pubsub_management.create_topic('topic9', exchange_point='xp2', parent_topic_id=topic8)
topic10 = self.pubsub_management.create_topic('topic10', exchange_point='xp2', parent_topic_id=topic9)
topic11 = self.pubsub_management.create_topic('topic11', exchange_point='xp2', parent_topic_id=topic9)
topic12 = self.pubsub_management.create_topic('topic12', exchange_point='xp2', parent_topic_id=topic11)
topic13 = self.pubsub_management.create_topic('topic13', exchange_point='xp2', parent_topic_id=topic11)
self.exchange_cleanup.extend(['xp1','xp2'])
stream1_id, route = self.pubsub_management.create_stream('stream1', topic_ids=[topic7, topic4, topic5], exchange_point='xp1')
stream2_id, route = self.pubsub_management.create_stream('stream2', topic_ids=[topic8], exchange_point='xp2')
stream3_id, route = self.pubsub_management.create_stream('stream3', topic_ids=[topic10,topic13], exchange_point='xp2')
stream4_id, route = self.pubsub_management.create_stream('stream4', topic_ids=[topic9], exchange_point='xp2')
stream5_id, route = self.pubsub_management.create_stream('stream5', topic_ids=[topic11], exchange_point='xp2')
subscription1 = self.pubsub_management.create_subscription('sub1', topic_ids=[topic1])
subscription2 = self.pubsub_management.create_subscription('sub2', topic_ids=[topic8], exchange_name='sub1')
subscription3 = self.pubsub_management.create_subscription('sub3', topic_ids=[topic9], exchange_name='sub1')
subscription4 = self.pubsub_management.create_subscription('sub4', topic_ids=[topic10,topic13, topic11], exchange_name='sub1')
#--------------------------------------------------------------------------------
self.pubsub_management.activate_subscription(subscription1)
self.publish_on_stream(stream1_id,1)
self.assertEquals(self.msg_queue.get(timeout=10), 1)
with self.assertRaises(Empty):
self.msg_queue.get(timeout=0.1)
self.pubsub_management.deactivate_subscription(subscription1)
self.pubsub_management.delete_subscription(subscription1)
#--------------------------------------------------------------------------------
self.pubsub_management.activate_subscription(subscription2)
self.publish_on_stream(stream2_id,2)
self.assertEquals(self.msg_queue.get(timeout=10), 2)
with self.assertRaises(Empty):
self.msg_queue.get(timeout=0.1)
self.pubsub_management.deactivate_subscription(subscription2)
self.pubsub_management.delete_subscription(subscription2)
#--------------------------------------------------------------------------------
self.pubsub_management.activate_subscription(subscription3)
self.publish_on_stream(stream2_id, 3)
with self.assertRaises(Empty):
self.msg_queue.get(timeout=0.3)
self.publish_on_stream(stream3_id, 4)
self.assertEquals(self.msg_queue.get(timeout=10),4)
self.pubsub_management.deactivate_subscription(subscription3)
self.pubsub_management.delete_subscription(subscription3)
#--------------------------------------------------------------------------------
self.pubsub_management.activate_subscription(subscription4)
self.publish_on_stream(stream4_id, 5)
with self.assertRaises(Empty):
self.msg_queue.get(timeout=0.3)
self.publish_on_stream(stream5_id, 6)
self.assertEquals(self.msg_queue.get(timeout=10),6)
with self.assertRaises(Empty):
self.msg_queue.get(timeout=0.3)
self.pubsub_management.deactivate_subscription(subscription4)
self.pubsub_management.delete_subscription(subscription4)
#--------------------------------------------------------------------------------
sub1.stop()
self.pubsub_management.delete_topic(topic13)
self.pubsub_management.delete_topic(topic12)
self.pubsub_management.delete_topic(topic11)
self.pubsub_management.delete_topic(topic10)
self.pubsub_management.delete_topic(topic9)
self.pubsub_management.delete_topic(topic8)
self.pubsub_management.delete_topic(topic7)
self.pubsub_management.delete_topic(topic6)
self.pubsub_management.delete_topic(topic5)
self.pubsub_management.delete_topic(topic4)
self.pubsub_management.delete_topic(topic3)
self.pubsub_management.delete_topic(topic2)
self.pubsub_management.delete_topic(topic1)
self.pubsub_management.delete_stream(stream1_id)
self.pubsub_management.delete_stream(stream2_id)
self.pubsub_management.delete_stream(stream3_id)
self.pubsub_management.delete_stream(stream4_id)
self.pubsub_management.delete_stream(stream5_id)
class PubsubManagementIntTest(IonIntegrationTestCase):
def setUp(self):
self._start_container()
self.container.start_rel_from_url("res/deploy/r2deploy.yml")
self.pubsub_management = PubsubManagementServiceClient()
self.resource_registry = ResourceRegistryServiceClient()
self.dataset_management = DatasetManagementServiceClient()
self.queue_cleanup = list()
self.exchange_cleanup = list()
def tearDown(self):
for queue in self.queue_cleanup:
xn = self.container.ex_manager.create_xn_queue(queue)
xn.delete()
for exchange in self.exchange_cleanup:
xp = self.container.ex_manager.create_xp(exchange)
xp.delete()
def test_stream_def_crud(self):
# Test Creation
pdict = DatasetManagementService.get_parameter_dictionary_by_name("ctd_parsed_param_dict")
stream_definition_id = self.pubsub_management.create_stream_definition(
"ctd parsed", parameter_dictionary_id=pdict.identifier
)
# Make sure there is an assoc
self.assertTrue(
self.resource_registry.find_associations(
subject=stream_definition_id,
predicate=PRED.hasParameterDictionary,
object=pdict.identifier,
id_only=True,
)
)
# Test Reading
stream_definition = self.pubsub_management.read_stream_definition(stream_definition_id)
self.assertTrue(PubsubManagementService._compare_pdicts(pdict.dump(), stream_definition.parameter_dictionary))
# Test Deleting
self.pubsub_management.delete_stream_definition(stream_definition_id)
self.assertFalse(
self.resource_registry.find_associations(
subject=stream_definition_id,
predicate=PRED.hasParameterDictionary,
object=pdict.identifier,
id_only=True,
)
)
# Test comparisons
in_stream_definition_id = self.pubsub_management.create_stream_definition(
"L0 products",
parameter_dictionary=pdict.identifier,
available_fields=["time", "temp", "conductivity", "pressure"],
)
self.addCleanup(self.pubsub_management.delete_stream_definition, in_stream_definition_id)
out_stream_definition_id = in_stream_definition_id
self.assertTrue(
self.pubsub_management.compare_stream_definition(in_stream_definition_id, out_stream_definition_id)
)
self.assertTrue(
self.pubsub_management.compatible_stream_definitions(in_stream_definition_id, out_stream_definition_id)
)
out_stream_definition_id = self.pubsub_management.create_stream_definition(
"L2 Products", parameter_dictionary=pdict.identifier, available_fields=["time", "salinity", "density"]
)
self.addCleanup(self.pubsub_management.delete_stream_definition, out_stream_definition_id)
self.assertFalse(
self.pubsub_management.compare_stream_definition(in_stream_definition_id, out_stream_definition_id)
)
self.assertTrue(
self.pubsub_management.compatible_stream_definitions(in_stream_definition_id, out_stream_definition_id)
)
def test_validate_stream_defs(self):
# test no input
incoming_pdict_id = self._get_pdict(["time", "lat", "lon", "TEMPWAT_L0", "CONDWAT_L0", "PRESWAT_L0"])
outgoing_pdict_id = self._get_pdict(["DENSITY", "PRACSAL", "TEMPWAT_L1", "CONDWAT_L1", "PRESWAT_L1"])
available_fields_in = []
available_fields_out = []
incoming_stream_def_id = self.pubsub_management.create_stream_definition(
"in_sd_0", parameter_dictionary_id=incoming_pdict_id, available_fields=available_fields_in
)
outgoing_stream_def_id = self.pubsub_management.create_stream_definition(
"out_sd_0", parameter_dictionary_id=outgoing_pdict_id, available_fields=available_fields_out
)
result = self.pubsub_management.validate_stream_defs(incoming_stream_def_id, outgoing_stream_def_id)
self.assertFalse(result)
# test input with no output
incoming_pdict_id = self._get_pdict(["time", "lat", "lon", "TEMPWAT_L0", "CONDWAT_L0", "PRESWAT_L0"])
outgoing_pdict_id = self._get_pdict(["DENSITY", "PRACSAL", "TEMPWAT_L1", "CONDWAT_L1", "PRESWAT_L1"])
available_fields_in = ["time", "lat", "lon", "TEMPWAT_L0", "CONDWAT_L0", "PRESWAT_L0"]
available_fields_out = []
incoming_stream_def_id = self.pubsub_management.create_stream_definition(
"in_sd_1", parameter_dictionary_id=incoming_pdict_id, available_fields=available_fields_in
)
outgoing_stream_def_id = self.pubsub_management.create_stream_definition(
"out_sd_1", parameter_dictionary_id=outgoing_pdict_id, available_fields=available_fields_out
)
result = self.pubsub_management.validate_stream_defs(incoming_stream_def_id, outgoing_stream_def_id)
self.assertTrue(result)
# test available field missing parameter context definition -- missing PRESWAT_L0
incoming_pdict_id = self._get_pdict(["time", "lat", "lon", "TEMPWAT_L0", "CONDWAT_L0"])
outgoing_pdict_id = self._get_pdict(["DENSITY", "PRACSAL", "TEMPWAT_L1", "CONDWAT_L1", "PRESWAT_L1"])
available_fields_in = ["time", "lat", "lon", "TEMPWAT_L0", "CONDWAT_L0", "PRESWAT_L0"]
available_fields_out = ["DENSITY"]
incoming_stream_def_id = self.pubsub_management.create_stream_definition(
"in_sd_2", parameter_dictionary_id=incoming_pdict_id, available_fields=available_fields_in
)
outgoing_stream_def_id = self.pubsub_management.create_stream_definition(
"out_sd_2", parameter_dictionary_id=outgoing_pdict_id, available_fields=available_fields_out
)
result = self.pubsub_management.validate_stream_defs(incoming_stream_def_id, outgoing_stream_def_id)
self.assertFalse(result)
# test l1 from l0
incoming_pdict_id = self._get_pdict(["time", "lat", "lon", "TEMPWAT_L0", "CONDWAT_L0", "PRESWAT_L0"])
outgoing_pdict_id = self._get_pdict(["TEMPWAT_L1", "CONDWAT_L1", "PRESWAT_L1"])
available_fields_in = ["time", "lat", "lon", "TEMPWAT_L0", "CONDWAT_L0", "PRESWAT_L0"]
available_fields_out = ["TEMPWAT_L1", "CONDWAT_L1", "PRESWAT_L1"]
incoming_stream_def_id = self.pubsub_management.create_stream_definition(
"in_sd_3", parameter_dictionary_id=incoming_pdict_id, available_fields=available_fields_in
)
outgoing_stream_def_id = self.pubsub_management.create_stream_definition(
"out_sd_3", parameter_dictionary_id=outgoing_pdict_id, available_fields=available_fields_out
)
result = self.pubsub_management.validate_stream_defs(incoming_stream_def_id, outgoing_stream_def_id)
self.assertTrue(result)
# test l2 from l0
incoming_pdict_id = self._get_pdict(["time", "lat", "lon", "TEMPWAT_L0", "CONDWAT_L0", "PRESWAT_L0"])
outgoing_pdict_id = self._get_pdict(["TEMPWAT_L1", "CONDWAT_L1", "PRESWAT_L1", "DENSITY", "PRACSAL"])
available_fields_in = ["time", "lat", "lon", "TEMPWAT_L0", "CONDWAT_L0", "PRESWAT_L0"]
available_fields_out = ["DENSITY", "PRACSAL"]
incoming_stream_def_id = self.pubsub_management.create_stream_definition(
"in_sd_4", parameter_dictionary_id=incoming_pdict_id, available_fields=available_fields_in
)
outgoing_stream_def_id = self.pubsub_management.create_stream_definition(
"out_sd_4", parameter_dictionary_id=outgoing_pdict_id, available_fields=available_fields_out
)
result = self.pubsub_management.validate_stream_defs(incoming_stream_def_id, outgoing_stream_def_id)
self.assertTrue(result)
# test Ln from L0
incoming_pdict_id = self._get_pdict(["time", "lat", "lon", "TEMPWAT_L0", "CONDWAT_L0", "PRESWAT_L0"])
outgoing_pdict_id = self._get_pdict(["DENSITY", "PRACSAL", "TEMPWAT_L1", "CONDWAT_L1", "PRESWAT_L1"])
available_fields_in = ["time", "lat", "lon", "TEMPWAT_L0", "CONDWAT_L0", "PRESWAT_L0"]
available_fields_out = ["DENSITY", "PRACSAL", "TEMPWAT_L1", "CONDWAT_L1", "PRESWAT_L1"]
incoming_stream_def_id = self.pubsub_management.create_stream_definition(
"in_sd_5", parameter_dictionary_id=incoming_pdict_id, available_fields=available_fields_in
)
outgoing_stream_def_id = self.pubsub_management.create_stream_definition(
"out_sd_5", parameter_dictionary_id=outgoing_pdict_id, available_fields=available_fields_out
)
result = self.pubsub_management.validate_stream_defs(incoming_stream_def_id, outgoing_stream_def_id)
self.assertTrue(result)
# test L2 from L1
incoming_pdict_id = self._get_pdict(["time", "lat", "lon", "TEMPWAT_L1", "CONDWAT_L1", "PRESWAT_L1"])
outgoing_pdict_id = self._get_pdict(["DENSITY", "PRACSAL", "TEMPWAT_L1", "CONDWAT_L1", "PRESWAT_L1"])
available_fields_in = ["time", "lat", "lon", "TEMPWAT_L1", "CONDWAT_L1", "PRESWAT_L1"]
available_fields_out = ["DENSITY", "PRACSAL"]
incoming_stream_def_id = self.pubsub_management.create_stream_definition(
"in_sd_6", parameter_dictionary_id=incoming_pdict_id, available_fields=available_fields_in
)
outgoing_stream_def_id = self.pubsub_management.create_stream_definition(
"out_sd_6", parameter_dictionary_id=outgoing_pdict_id, available_fields=available_fields_out
)
result = self.pubsub_management.validate_stream_defs(incoming_stream_def_id, outgoing_stream_def_id)
self.assertTrue(result)
# test L1 from L0 missing L0
incoming_pdict_id = self._get_pdict(["time", "lat", "lon"])
outgoing_pdict_id = self._get_pdict(["TEMPWAT_L1", "CONDWAT_L1", "PRESWAT_L1"])
available_fields_in = ["time", "lat", "lon"]
available_fields_out = ["DENSITY", "PRACSAL"]
incoming_stream_def_id = self.pubsub_management.create_stream_definition(
"in_sd_7", parameter_dictionary_id=incoming_pdict_id, available_fields=available_fields_in
)
outgoing_stream_def_id = self.pubsub_management.create_stream_definition(
"out_sd_7", parameter_dictionary_id=outgoing_pdict_id, available_fields=available_fields_out
)
result = self.pubsub_management.validate_stream_defs(incoming_stream_def_id, outgoing_stream_def_id)
self.assertFalse(result)
# test L2 from L0 missing L0
incoming_pdict_id = self._get_pdict(["time", "lat", "lon"])
outgoing_pdict_id = self._get_pdict(["DENSITY", "PRACSAL", "TEMPWAT_L1", "CONDWAT_L1", "PRESWAT_L1"])
available_fields_in = ["time", "lat", "lon"]
available_fields_out = ["DENSITY", "PRACSAL"]
incoming_stream_def_id = self.pubsub_management.create_stream_definition(
"in_sd_8", parameter_dictionary_id=incoming_pdict_id, available_fields=available_fields_in
)
outgoing_stream_def_id = self.pubsub_management.create_stream_definition(
"out_sd_8", parameter_dictionary_id=outgoing_pdict_id, available_fields=available_fields_out
)
result = self.pubsub_management.validate_stream_defs(incoming_stream_def_id, outgoing_stream_def_id)
self.assertFalse(result)
# test L2 from L0 missing L1
incoming_pdict_id = self._get_pdict(["time", "lat", "lon", "TEMPWAT_L0", "CONDWAT_L0", "PRESWAT_L0"])
outgoing_pdict_id = self._get_pdict(["DENSITY", "PRACSAL"])
available_fields_in = ["time", "lat", "lon", "TEMPWAT_L0", "CONDWAT_L0", "PRESWAT_L0"]
available_fields_out = ["DENSITY", "PRACSAL"]
incoming_stream_def_id = self.pubsub_management.create_stream_definition(
"in_sd_9", parameter_dictionary_id=incoming_pdict_id, available_fields=available_fields_in
)
outgoing_stream_def_id = self.pubsub_management.create_stream_definition(
"out_sd_9", parameter_dictionary_id=outgoing_pdict_id, available_fields=available_fields_out
)
result = self.pubsub_management.validate_stream_defs(incoming_stream_def_id, outgoing_stream_def_id)
self.assertFalse(result)
def publish_on_stream(self, stream_id, msg):
stream = self.pubsub_management.read_stream(stream_id)
stream_route = stream.stream_route
publisher = StandaloneStreamPublisher(stream_id=stream_id, stream_route=stream_route)
publisher.publish(msg)
def test_stream_crud(self):
stream_def_id = self.pubsub_management.create_stream_definition("test_definition", stream_type="stream")
topic_id = self.pubsub_management.create_topic(name="test_topic", exchange_point="test_exchange")
self.exchange_cleanup.append("test_exchange")
topic2_id = self.pubsub_management.create_topic(name="another_topic", exchange_point="outside")
stream_id, route = self.pubsub_management.create_stream(
name="test_stream",
topic_ids=[topic_id, topic2_id],
exchange_point="test_exchange",
stream_definition_id=stream_def_id,
)
topics, assocs = self.resource_registry.find_objects(subject=stream_id, predicate=PRED.hasTopic, id_only=True)
self.assertEquals(topics, [topic_id])
defs, assocs = self.resource_registry.find_objects(
subject=stream_id, predicate=PRED.hasStreamDefinition, id_only=True
)
self.assertTrue(len(defs))
stream = self.pubsub_management.read_stream(stream_id)
self.assertEquals(stream.name, "test_stream")
self.pubsub_management.delete_stream(stream_id)
with self.assertRaises(NotFound):
self.pubsub_management.read_stream(stream_id)
defs, assocs = self.resource_registry.find_objects(
subject=stream_id, predicate=PRED.hasStreamDefinition, id_only=True
)
self.assertFalse(len(defs))
topics, assocs = self.resource_registry.find_objects(subject=stream_id, predicate=PRED.hasTopic, id_only=True)
self.assertFalse(len(topics))
self.pubsub_management.delete_topic(topic_id)
self.pubsub_management.delete_topic(topic2_id)
self.pubsub_management.delete_stream_definition(stream_def_id)
def test_subscription_crud(self):
stream_def_id = self.pubsub_management.create_stream_definition("test_definition", stream_type="stream")
stream_id, route = self.pubsub_management.create_stream(
name="test_stream", exchange_point="test_exchange", stream_definition_id=stream_def_id
)
subscription_id = self.pubsub_management.create_subscription(
name="test subscription", stream_ids=[stream_id], exchange_name="test_queue"
)
self.exchange_cleanup.append("test_exchange")
subs, assocs = self.resource_registry.find_objects(
subject=subscription_id, predicate=PRED.hasStream, id_only=True
)
self.assertEquals(subs, [stream_id])
res, _ = self.resource_registry.find_resources(restype=RT.ExchangeName, name="test_queue", id_only=True)
self.assertEquals(len(res), 1)
subs, assocs = self.resource_registry.find_subjects(
object=subscription_id, predicate=PRED.hasSubscription, id_only=True
)
self.assertEquals(subs[0], res[0])
subscription = self.pubsub_management.read_subscription(subscription_id)
self.assertEquals(subscription.exchange_name, "test_queue")
self.pubsub_management.delete_subscription(subscription_id)
subs, assocs = self.resource_registry.find_objects(
subject=subscription_id, predicate=PRED.hasStream, id_only=True
)
self.assertFalse(len(subs))
subs, assocs = self.resource_registry.find_subjects(
object=subscription_id, predicate=PRED.hasSubscription, id_only=True
)
self.assertFalse(len(subs))
self.pubsub_management.delete_stream(stream_id)
self.pubsub_management.delete_stream_definition(stream_def_id)
def test_move_before_activate(self):
stream_id, route = self.pubsub_management.create_stream(name="test_stream", exchange_point="test_xp")
# --------------------------------------------------------------------------------
# Test moving before activate
# --------------------------------------------------------------------------------
subscription_id = self.pubsub_management.create_subscription("first_queue", stream_ids=[stream_id])
xn_ids, _ = self.resource_registry.find_resources(restype=RT.ExchangeName, name="first_queue", id_only=True)
subjects, _ = self.resource_registry.find_subjects(
object=subscription_id, predicate=PRED.hasSubscription, id_only=True
)
self.assertEquals(xn_ids[0], subjects[0])
self.pubsub_management.move_subscription(subscription_id, exchange_name="second_queue")
xn_ids, _ = self.resource_registry.find_resources(restype=RT.ExchangeName, name="second_queue", id_only=True)
subjects, _ = self.resource_registry.find_subjects(
object=subscription_id, predicate=PRED.hasSubscription, id_only=True
)
self.assertEquals(len(subjects), 1)
self.assertEquals(subjects[0], xn_ids[0])
self.pubsub_management.delete_subscription(subscription_id)
self.pubsub_management.delete_stream(stream_id)
def test_move_activated_subscription(self):
stream_id, route = self.pubsub_management.create_stream(name="test_stream", exchange_point="test_xp")
# --------------------------------------------------------------------------------
# Test moving after activate
# --------------------------------------------------------------------------------
subscription_id = self.pubsub_management.create_subscription("first_queue", stream_ids=[stream_id])
self.pubsub_management.activate_subscription(subscription_id)
xn_ids, _ = self.resource_registry.find_resources(restype=RT.ExchangeName, name="first_queue", id_only=True)
subjects, _ = self.resource_registry.find_subjects(
object=subscription_id, predicate=PRED.hasSubscription, id_only=True
)
self.assertEquals(xn_ids[0], subjects[0])
self.verified = Event()
def verify(m, r, s):
self.assertEquals(m, "verified")
self.verified.set()
subscriber = StandaloneStreamSubscriber("second_queue", verify)
subscriber.start()
self.pubsub_management.move_subscription(subscription_id, exchange_name="second_queue")
xn_ids, _ = self.resource_registry.find_resources(restype=RT.ExchangeName, name="second_queue", id_only=True)
subjects, _ = self.resource_registry.find_subjects(
object=subscription_id, predicate=PRED.hasSubscription, id_only=True
)
self.assertEquals(len(subjects), 1)
self.assertEquals(subjects[0], xn_ids[0])
publisher = StandaloneStreamPublisher(stream_id, route)
publisher.publish("verified")
self.assertTrue(self.verified.wait(2))
self.pubsub_management.deactivate_subscription(subscription_id)
self.pubsub_management.delete_subscription(subscription_id)
self.pubsub_management.delete_stream(stream_id)
def test_queue_cleanup(self):
stream_id, route = self.pubsub_management.create_stream("test_stream", "xp1")
xn_objs, _ = self.resource_registry.find_resources(restype=RT.ExchangeName, name="queue1")
for xn_obj in xn_objs:
xn = self.container.ex_manager.create_xn_queue(xn_obj.name)
xn.delete()
subscription_id = self.pubsub_management.create_subscription("queue1", stream_ids=[stream_id])
xn_ids, _ = self.resource_registry.find_resources(restype=RT.ExchangeName, name="queue1")
self.assertEquals(len(xn_ids), 1)
self.pubsub_management.delete_subscription(subscription_id)
xn_ids, _ = self.resource_registry.find_resources(restype=RT.ExchangeName, name="queue1")
self.assertEquals(len(xn_ids), 0)
def test_activation_and_deactivation(self):
stream_id, route = self.pubsub_management.create_stream("stream1", "xp1")
subscription_id = self.pubsub_management.create_subscription("sub1", stream_ids=[stream_id])
self.check1 = Event()
def verifier(m, r, s):
self.check1.set()
subscriber = StandaloneStreamSubscriber("sub1", verifier)
subscriber.start()
publisher = StandaloneStreamPublisher(stream_id, route)
publisher.publish("should not receive")
self.assertFalse(self.check1.wait(0.25))
self.pubsub_management.activate_subscription(subscription_id)
publisher.publish("should receive")
self.assertTrue(self.check1.wait(2))
self.check1.clear()
self.assertFalse(self.check1.is_set())
self.pubsub_management.deactivate_subscription(subscription_id)
publisher.publish("should not receive")
self.assertFalse(self.check1.wait(0.5))
self.pubsub_management.activate_subscription(subscription_id)
publisher.publish("should receive")
self.assertTrue(self.check1.wait(2))
subscriber.stop()
self.pubsub_management.deactivate_subscription(subscription_id)
self.pubsub_management.delete_subscription(subscription_id)
self.pubsub_management.delete_stream(stream_id)
def test_topic_crud(self):
topic_id = self.pubsub_management.create_topic(name="test_topic", exchange_point="test_xp")
self.exchange_cleanup.append("test_xp")
topic = self.pubsub_management.read_topic(topic_id)
self.assertEquals(topic.name, "test_topic")
self.assertEquals(topic.exchange_point, "test_xp")
self.pubsub_management.delete_topic(topic_id)
with self.assertRaises(NotFound):
self.pubsub_management.read_topic(topic_id)
def test_full_pubsub(self):
self.sub1_sat = Event()
self.sub2_sat = Event()
def subscriber1(m, r, s):
self.sub1_sat.set()
def subscriber2(m, r, s):
self.sub2_sat.set()
sub1 = StandaloneStreamSubscriber("sub1", subscriber1)
self.queue_cleanup.append(sub1.xn.queue)
sub1.start()
sub2 = StandaloneStreamSubscriber("sub2", subscriber2)
self.queue_cleanup.append(sub2.xn.queue)
sub2.start()
log_topic = self.pubsub_management.create_topic("instrument_logs", exchange_point="instruments")
science_topic = self.pubsub_management.create_topic("science_data", exchange_point="instruments")
events_topic = self.pubsub_management.create_topic("notifications", exchange_point="events")
log_stream, route = self.pubsub_management.create_stream(
"instrument1-logs", topic_ids=[log_topic], exchange_point="instruments"
)
ctd_stream, route = self.pubsub_management.create_stream(
"instrument1-ctd", topic_ids=[science_topic], exchange_point="instruments"
)
event_stream, route = self.pubsub_management.create_stream(
"notifications", topic_ids=[events_topic], exchange_point="events"
)
raw_stream, route = self.pubsub_management.create_stream("temp", exchange_point="global.data")
self.exchange_cleanup.extend(["instruments", "events", "global.data"])
subscription1 = self.pubsub_management.create_subscription(
"subscription1", stream_ids=[log_stream, event_stream], exchange_name="sub1"
)
subscription2 = self.pubsub_management.create_subscription(
"subscription2", exchange_points=["global.data"], stream_ids=[ctd_stream], exchange_name="sub2"
)
self.pubsub_management.activate_subscription(subscription1)
self.pubsub_management.activate_subscription(subscription2)
self.publish_on_stream(log_stream, 1)
self.assertTrue(self.sub1_sat.wait(4))
self.assertFalse(self.sub2_sat.is_set())
self.publish_on_stream(raw_stream, 1)
self.assertTrue(self.sub1_sat.wait(4))
sub1.stop()
sub2.stop()
def test_topic_craziness(self):
self.msg_queue = Queue()
def subscriber1(m, r, s):
self.msg_queue.put(m)
sub1 = StandaloneStreamSubscriber("sub1", subscriber1)
self.queue_cleanup.append(sub1.xn.queue)
sub1.start()
topic1 = self.pubsub_management.create_topic("topic1", exchange_point="xp1")
topic2 = self.pubsub_management.create_topic("topic2", exchange_point="xp1", parent_topic_id=topic1)
topic3 = self.pubsub_management.create_topic("topic3", exchange_point="xp1", parent_topic_id=topic1)
topic4 = self.pubsub_management.create_topic("topic4", exchange_point="xp1", parent_topic_id=topic2)
topic5 = self.pubsub_management.create_topic("topic5", exchange_point="xp1", parent_topic_id=topic2)
topic6 = self.pubsub_management.create_topic("topic6", exchange_point="xp1", parent_topic_id=topic3)
topic7 = self.pubsub_management.create_topic("topic7", exchange_point="xp1", parent_topic_id=topic3)
# Tree 2
topic8 = self.pubsub_management.create_topic("topic8", exchange_point="xp2")
topic9 = self.pubsub_management.create_topic("topic9", exchange_point="xp2", parent_topic_id=topic8)
topic10 = self.pubsub_management.create_topic("topic10", exchange_point="xp2", parent_topic_id=topic9)
topic11 = self.pubsub_management.create_topic("topic11", exchange_point="xp2", parent_topic_id=topic9)
topic12 = self.pubsub_management.create_topic("topic12", exchange_point="xp2", parent_topic_id=topic11)
topic13 = self.pubsub_management.create_topic("topic13", exchange_point="xp2", parent_topic_id=topic11)
self.exchange_cleanup.extend(["xp1", "xp2"])
stream1_id, route = self.pubsub_management.create_stream(
"stream1", topic_ids=[topic7, topic4, topic5], exchange_point="xp1"
)
stream2_id, route = self.pubsub_management.create_stream("stream2", topic_ids=[topic8], exchange_point="xp2")
stream3_id, route = self.pubsub_management.create_stream(
"stream3", topic_ids=[topic10, topic13], exchange_point="xp2"
)
stream4_id, route = self.pubsub_management.create_stream("stream4", topic_ids=[topic9], exchange_point="xp2")
stream5_id, route = self.pubsub_management.create_stream("stream5", topic_ids=[topic11], exchange_point="xp2")
subscription1 = self.pubsub_management.create_subscription("sub1", topic_ids=[topic1])
subscription2 = self.pubsub_management.create_subscription("sub2", topic_ids=[topic8], exchange_name="sub1")
subscription3 = self.pubsub_management.create_subscription("sub3", topic_ids=[topic9], exchange_name="sub1")
subscription4 = self.pubsub_management.create_subscription(
"sub4", topic_ids=[topic10, topic13, topic11], exchange_name="sub1"
)
# --------------------------------------------------------------------------------
self.pubsub_management.activate_subscription(subscription1)
self.publish_on_stream(stream1_id, 1)
self.assertEquals(self.msg_queue.get(timeout=10), 1)
with self.assertRaises(Empty):
self.msg_queue.get(timeout=0.1)
self.pubsub_management.deactivate_subscription(subscription1)
self.pubsub_management.delete_subscription(subscription1)
# --------------------------------------------------------------------------------
self.pubsub_management.activate_subscription(subscription2)
self.publish_on_stream(stream2_id, 2)
self.assertEquals(self.msg_queue.get(timeout=10), 2)
with self.assertRaises(Empty):
self.msg_queue.get(timeout=0.1)
self.pubsub_management.deactivate_subscription(subscription2)
self.pubsub_management.delete_subscription(subscription2)
# --------------------------------------------------------------------------------
self.pubsub_management.activate_subscription(subscription3)
self.publish_on_stream(stream2_id, 3)
with self.assertRaises(Empty):
self.msg_queue.get(timeout=0.3)
self.publish_on_stream(stream3_id, 4)
self.assertEquals(self.msg_queue.get(timeout=10), 4)
self.pubsub_management.deactivate_subscription(subscription3)
self.pubsub_management.delete_subscription(subscription3)
# --------------------------------------------------------------------------------
self.pubsub_management.activate_subscription(subscription4)
self.publish_on_stream(stream4_id, 5)
with self.assertRaises(Empty):
self.msg_queue.get(timeout=0.3)
self.publish_on_stream(stream5_id, 6)
self.assertEquals(self.msg_queue.get(timeout=10), 6)
with self.assertRaises(Empty):
self.msg_queue.get(timeout=0.3)
self.pubsub_management.deactivate_subscription(subscription4)
self.pubsub_management.delete_subscription(subscription4)
# --------------------------------------------------------------------------------
sub1.stop()
self.pubsub_management.delete_topic(topic13)
self.pubsub_management.delete_topic(topic12)
self.pubsub_management.delete_topic(topic11)
self.pubsub_management.delete_topic(topic10)
self.pubsub_management.delete_topic(topic9)
self.pubsub_management.delete_topic(topic8)
self.pubsub_management.delete_topic(topic7)
self.pubsub_management.delete_topic(topic6)
self.pubsub_management.delete_topic(topic5)
self.pubsub_management.delete_topic(topic4)
self.pubsub_management.delete_topic(topic3)
self.pubsub_management.delete_topic(topic2)
self.pubsub_management.delete_topic(topic1)
self.pubsub_management.delete_stream(stream1_id)
self.pubsub_management.delete_stream(stream2_id)
self.pubsub_management.delete_stream(stream3_id)
self.pubsub_management.delete_stream(stream4_id)
self.pubsub_management.delete_stream(stream5_id)
def _get_pdict(self, filter_values):
t_ctxt = ParameterContext("time", param_type=QuantityType(value_encoding=np.dtype("int64")))
t_ctxt.uom = "seconds since 01-01-1900"
t_ctxt.fill_value = -9999
t_ctxt_id = self.dataset_management.create_parameter_context(
name="time", parameter_context=t_ctxt.dump(), parameter_type="quantity<int64>", unit_of_measure=t_ctxt.uom
)
lat_ctxt = ParameterContext("lat", param_type=ConstantType(QuantityType(value_encoding=np.dtype("float32"))))
lat_ctxt.axis = AxisTypeEnum.LAT
lat_ctxt.uom = "degree_north"
lat_ctxt.fill_value = -9999
lat_ctxt_id = self.dataset_management.create_parameter_context(
name="lat",
parameter_context=lat_ctxt.dump(),
parameter_type="quantity<float32>",
unit_of_measure=lat_ctxt.uom,
)
lon_ctxt = ParameterContext("lon", param_type=ConstantType(QuantityType(value_encoding=np.dtype("float32"))))
lon_ctxt.axis = AxisTypeEnum.LON
lon_ctxt.uom = "degree_east"
lon_ctxt.fill_value = -9999
lon_ctxt_id = self.dataset_management.create_parameter_context(
name="lon",
parameter_context=lon_ctxt.dump(),
parameter_type="quantity<float32>",
unit_of_measure=lon_ctxt.uom,
)
temp_ctxt = ParameterContext("TEMPWAT_L0", param_type=QuantityType(value_encoding=np.dtype("float32")))
temp_ctxt.uom = "deg_C"
temp_ctxt.fill_value = -9999
temp_ctxt_id = self.dataset_management.create_parameter_context(
name="TEMPWAT_L0",
parameter_context=temp_ctxt.dump(),
parameter_type="quantity<float32>",
unit_of_measure=temp_ctxt.uom,
)
# Conductivity - values expected to be the decimal results of conversion from hex
cond_ctxt = ParameterContext("CONDWAT_L0", param_type=QuantityType(value_encoding=np.dtype("float32")))
cond_ctxt.uom = "S m-1"
cond_ctxt.fill_value = -9999
cond_ctxt_id = self.dataset_management.create_parameter_context(
name="CONDWAT_L0",
parameter_context=cond_ctxt.dump(),
parameter_type="quantity<float32>",
unit_of_measure=cond_ctxt.uom,
)
# Pressure - values expected to be the decimal results of conversion from hex
press_ctxt = ParameterContext("PRESWAT_L0", param_type=QuantityType(value_encoding=np.dtype("float32")))
press_ctxt.uom = "dbar"
press_ctxt.fill_value = -9999
press_ctxt_id = self.dataset_management.create_parameter_context(
name="PRESWAT_L0",
parameter_context=press_ctxt.dump(),
parameter_type="quantity<float32>",
unit_of_measure=press_ctxt.uom,
)
# TEMPWAT_L1 = (TEMPWAT_L0 / 10000) - 10
tl1_func = "(TEMPWAT_L0 / 10000) - 10"
tl1_pmap = {"TEMPWAT_L0": "TEMPWAT_L0"}
func = NumexprFunction("TEMPWAT_L1", tl1_func, tl1_pmap)
tempL1_ctxt = ParameterContext(
"TEMPWAT_L1", param_type=ParameterFunctionType(function=func), variability=VariabilityEnum.TEMPORAL
)
tempL1_ctxt.uom = "deg_C"
tempL1_ctxt_id = self.dataset_management.create_parameter_context(
name=tempL1_ctxt.name,
parameter_context=tempL1_ctxt.dump(),
parameter_type="pfunc",
unit_of_measure=tempL1_ctxt.uom,
)
# CONDWAT_L1 = (CONDWAT_L0 / 100000) - 0.5
cl1_func = "(CONDWAT_L0 / 100000) - 0.5"
cl1_pmap = {"CONDWAT_L0": "CONDWAT_L0"}
func = NumexprFunction("CONDWAT_L1", cl1_func, cl1_pmap)
condL1_ctxt = ParameterContext(
"CONDWAT_L1", param_type=ParameterFunctionType(function=func), variability=VariabilityEnum.TEMPORAL
)
condL1_ctxt.uom = "S m-1"
condL1_ctxt_id = self.dataset_management.create_parameter_context(
name=condL1_ctxt.name,
parameter_context=condL1_ctxt.dump(),
parameter_type="pfunc",
unit_of_measure=condL1_ctxt.uom,
)
# Equation uses p_range, which is a calibration coefficient - Fixing to 679.34040721
# PRESWAT_L1 = (PRESWAT_L0 * p_range / (0.85 * 65536)) - (0.05 * p_range)
pl1_func = "(PRESWAT_L0 * 679.34040721 / (0.85 * 65536)) - (0.05 * 679.34040721)"
pl1_pmap = {"PRESWAT_L0": "PRESWAT_L0"}
func = NumexprFunction("PRESWAT_L1", pl1_func, pl1_pmap)
presL1_ctxt = ParameterContext(
"PRESWAT_L1", param_type=ParameterFunctionType(function=func), variability=VariabilityEnum.TEMPORAL
)
presL1_ctxt.uom = "S m-1"
presL1_ctxt_id = self.dataset_management.create_parameter_context(
name=presL1_ctxt.name,
parameter_context=presL1_ctxt.dump(),
parameter_type="pfunc",
unit_of_measure=presL1_ctxt.uom,
)
# Density & practical salinity calucluated using the Gibbs Seawater library - available via python-gsw project:
# https://code.google.com/p/python-gsw/ & http://pypi.python.org/pypi/gsw/3.0.1
# PRACSAL = gsw.SP_from_C((CONDWAT_L1 * 10), TEMPWAT_L1, PRESWAT_L1)
owner = "gsw"
sal_func = "SP_from_C"
sal_arglist = [NumexprFunction("CONDWAT_L1*10", "C*10", {"C": "CONDWAT_L1"}), "TEMPWAT_L1", "PRESWAT_L1"]
sal_kwargmap = None
func = PythonFunction("PRACSAL", owner, sal_func, sal_arglist, sal_kwargmap)
sal_ctxt = ParameterContext(
"PRACSAL", param_type=ParameterFunctionType(func), variability=VariabilityEnum.TEMPORAL
)
sal_ctxt.uom = "g kg-1"
sal_ctxt_id = self.dataset_management.create_parameter_context(
name=sal_ctxt.name, parameter_context=sal_ctxt.dump(), parameter_type="pfunc", unit_of_measure=sal_ctxt.uom
)
# absolute_salinity = gsw.SA_from_SP(PRACSAL, PRESWAT_L1, longitude, latitude)
# conservative_temperature = gsw.CT_from_t(absolute_salinity, TEMPWAT_L1, PRESWAT_L1)
# DENSITY = gsw.rho(absolute_salinity, conservative_temperature, PRESWAT_L1)
owner = "gsw"
abs_sal_func = PythonFunction("abs_sal", owner, "SA_from_SP", ["PRACSAL", "PRESWAT_L1", "lon", "lat"], None)
# abs_sal_func = PythonFunction('abs_sal', owner, 'SA_from_SP', ['lon','lat'], None)
cons_temp_func = PythonFunction(
"cons_temp", owner, "CT_from_t", [abs_sal_func, "TEMPWAT_L1", "PRESWAT_L1"], None
)
dens_func = PythonFunction("DENSITY", owner, "rho", [abs_sal_func, cons_temp_func, "PRESWAT_L1"], None)
dens_ctxt = ParameterContext(
"DENSITY", param_type=ParameterFunctionType(dens_func), variability=VariabilityEnum.TEMPORAL
)
dens_ctxt.uom = "kg m-3"
dens_ctxt_id = self.dataset_management.create_parameter_context(
name=dens_ctxt.name,
parameter_context=dens_ctxt.dump(),
parameter_type="pfunc",
unit_of_measure=dens_ctxt.uom,
)
ids = [
t_ctxt_id,
lat_ctxt_id,
lon_ctxt_id,
temp_ctxt_id,
cond_ctxt_id,
press_ctxt_id,
tempL1_ctxt_id,
condL1_ctxt_id,
presL1_ctxt_id,
sal_ctxt_id,
dens_ctxt_id,
]
contexts = [
t_ctxt,
lat_ctxt,
lon_ctxt,
temp_ctxt,
cond_ctxt,
press_ctxt,
tempL1_ctxt,
condL1_ctxt,
presL1_ctxt,
sal_ctxt,
dens_ctxt,
]
context_ids = [ids[i] for i, ctxt in enumerate(contexts) if ctxt.name in filter_values]
pdict_name = "_".join([ctxt.name for ctxt in contexts if ctxt.name in filter_values])
pdict_id = self.dataset_management.create_parameter_dictionary(
pdict_name, parameter_context_ids=context_ids, temporal_context="time"
)
return pdict_id
class TestObservatoryManagementFullIntegration(IonIntegrationTestCase):
def setUp(self):
self._start_container()
self.container.start_rel_from_url('res/deploy/r2deploy.yml')
self.RR = ResourceRegistryServiceClient(node=self.container.node)
self.RR2 = EnhancedResourceRegistryClient(self.RR)
self.OMS = ObservatoryManagementServiceClient(node=self.container.node)
self.org_management_service = OrgManagementServiceClient(node=self.container.node)
self.IMS = InstrumentManagementServiceClient(node=self.container.node)
self.dpclient = DataProductManagementServiceClient(node=self.container.node)
self.pubsubcli = PubsubManagementServiceClient(node=self.container.node)
self.damsclient = DataAcquisitionManagementServiceClient(node=self.container.node)
self.dataset_management = DatasetManagementServiceClient()
def assert_can_load(self, scenarios, loadui=False, loadooi=False, path=TESTED_DOC, ui_path='default'):
""" perform preload for given scenarios and raise exception if there is a problem with the data """
config = dict(op="load",
scenario=scenarios,
attachments="res/preload/r2_ioc/attachments",
loadui=loadui,
loadooi=loadooi,
path=path, ui_path=ui_path,
assets='res/preload/r2_ioc/ooi_assets',
bulk=loadooi,
debug=True,
ooiexclude='DataProduct,DataProductLink',
)
self.container.spawn_process("Loader", "ion.processes.bootstrap.ion_loader", "IONLoader", config=config)
# 'DataProduct,DataProductLink,WorkflowDefinition,ExternalDataProvider,ExternalDatasetModel,ExternalDataset,ExternalDatasetAgent,ExternalDatasetAgentInstance',
def load_summer_deploy_assets(self):
""" make sure UI assets are valid using DEFAULT_UI_ASSETS = 'https://userexperience.oceanobservatories.org/database-exports/' """
ui_path = 'https://userexperience.oceanobservatories.org/database-exports/Candidates'
self.assert_can_load(scenarios="X", loadui=True, loadooi=True, ui_path=ui_path)
@unittest.skip('under construction.')
def test_observatory(self):
# Perform OOI preload for summer deployments (production mode, no debug, no bulk)
self.load_summer_deploy_assets()
#test an asset
res_list, _ = self.RR.find_resources_ext(alt_id_ns="OOI", alt_id="CE04OSBP-LJ01C-06-CTDBPO108")
log.debug('test_observatory retrieve test: %s', res_list)
# Check OOI preloaded resources to see if they match needs for this test and for correctness
observatory_list, _ = self.RR.find_resources_ext(restype=RT.Observatory)
self.assertEquals(42, len(observatory_list))
platform_site_list, _ = self.RR.find_resources(RT.PlatformSite, None, None, False)
for ps in platform_site_list:
log.debug('platform site: %s', ps.name)
self.assertEquals(38, len(platform_site_list))
platform_device_list, _ = self.RR.find_resources(RT.PlatformDevice, None, None, False)
for pd in platform_device_list:
log.debug('platform device: %s', pd.name)
self.assertEquals(38, len(platform_site_list))
platform_agent_list, _ = self.RR.find_resources(RT.PlatformAgent, None, None, False)
self.assertEquals(2, len(platform_agent_list))
for pa in platform_agent_list:
log.debug('platform agent: %s', pa.name)
deployment_list, _ = self.RR.find_resources(RT.Deployment, None, None, False)
self.assertEquals(62, len(deployment_list))
for d in deployment_list:
log.debug('deployment: %s', d.name)
# Check lcstates for select OOI resources: Some PLANNED, some INTEGRATED, some DEPLOYED
for obs in observatory_list:
self.assertEquals(obs.lcstate, 'DRAFT')
for pdev in platform_device_list:
self.assertEquals(pdev.lcstate, 'PLANNED')
for pagent in platform_agent_list:
self.assertEquals(pagent.lcstate, 'DEPLOYED')
# See if Deployment for primary nodes is already active and in DEPLOYED lcstate, in particular CE04OSHY-PN01C
for deploy in deployment_list:
self.assertEquals(deploy.lcstate, 'PLANNED')
dp_list, _ = self.RR.find_resources_ext(alt_id_ns="PRE", alt_id="CE04OSHY-PN01C_DEP")
self.assertEquals(len(dp_list), 1)
self.assertEquals(dp_list[0].availability, 'AVAILABLE')
log.debug('test_observatory retrieve CE04OSHY-PN01C_DEP deployment: %s', res_list[0])
# Check existing RSN node CE04OSHY-LV01C Deployment (PLANNED lcstate)
CE04OSHY_LV01C_deployment = self.retrieve_ooi_asset(namespace='PRE', alt_id='CE04OSHY-LV01C_DEP')
#self.dump_deployment(CE04OSHY_LV01C_deployment._id)
self.assertEquals(CE04OSHY_LV01C_deployment.lcstate, 'PLANNED')
log.debug('test_observatory retrieve RSN node CE04OSHY-LV01C Deployment: %s', CE04OSHY_LV01C_deployment)
# Set CE04OSHY-LV01C device to DEVELOPED state
# MATURITY = ['DRAFT', 'PLANNED', 'DEVELOPED', 'INTEGRATED', 'DEPLOYED', 'RETIRED']
CE04OSHY_LV01C_device = self.retrieve_ooi_asset(namespace='PRE', alt_id='CE04OSHY-LV01C_PD')
#ret = self.RR.execute_lifecycle_transition(resource_id=CE04OSHY_LV01C_device._id, transition_event=LCE.PLANNED)
self.transition_lcs_then_verify(resource_id=CE04OSHY_LV01C_device._id, new_lcs_state=LCE.DEVELOP, verify='DEVELOPED')
# Set CE04OSHY-LV01C device to INTEGRATED state
self.transition_lcs_then_verify(resource_id=CE04OSHY_LV01C_device._id, new_lcs_state=LCE.INTEGRATE, verify='INTEGRATED')
# Set CE04OSHY-LV01C device to DEPLOYED state
self.transition_lcs_then_verify(resource_id=CE04OSHY_LV01C_device._id, new_lcs_state=LCE.DEPLOY, verify='DEPLOYED')
# Set CE04OSHY-LV01C Deployment to DEPLOYED state
self.transition_lcs_then_verify(resource_id=CE04OSHY_LV01C_deployment._id, new_lcs_state=LCE.DEPLOY, verify='DEPLOYED')
# Activate Deployment for CE04OSHY-LV01C
self.OMS.activate_deployment(CE04OSHY_LV01C_deployment._id)
log.debug('--------- activate_deployment CE04OSHY_LV01C_deployment -------------- ')
self.dump_deployment(CE04OSHY_LV01C_deployment._id)
self.validate_deployment_activated(CE04OSHY_LV01C_deployment._id)
# (optional) Start CE04OSHY-LV01C platform agent with simulator
# Set DataProduct for CE04OSHY-LV01C platform to DEPLOYED state
output_data_product_ids, assns =self.RR.find_objects(subject=CE04OSHY_LV01C_device._id, predicate=PRED.hasOutputProduct, id_only=True)
if output_data_product_ids:
#self.assertEquals(len(child_devs), 3)
for output_data_product_id in output_data_product_ids:
log.debug('DataProduct for CE04OSHY-LV01C platform: %s', output_data_product_id)
self.transition_lcs_then_verify(resource_id=output_data_product_id, new_lcs_state=LCE.DEPLOY, verify='DEPLOYED')
# Check events for CE04OSHY-LV01C platform
# Check existing CE04OSBP-LJ01C Deployment (PLANNED lcstate)
# dp_list, _ = self.RR.find_resources_ext(alt_id_ns="PRE", alt_id="CE04OSBP-LJ01C_DEP")
# self.assertEquals(len(dp_list), 1)
# CE04OSHY_LV01C_deployment = dp_list[0]
# self.assertEquals(CE04OSHY_LV01C_deployment.lcstate, 'PLANNED')
# log.debug('test_observatory retrieve RSN node CE04OSBP-LJ01C Deployment: %s', CE04OSHY_LV01C_deployment)
# Set CE04OSBP-LJ01C Deployment to DEPLOYED state
# Update description and other attributes for CE04OSBP-LJ01C device resource
# Create attachment (JPG image) for CE04OSBP-LJ01C device resource
# Activate Deployment for CE04OSBP-LJ01C
# (optional) Add/register CE04OSBP-LJ01C platform agent to parent agent
# (optional) Start CE04OSBP-LJ01C platform agent
log.debug('--------- ------------------------------------------------------------------------------------------------------------ -------------- ')
# Check existing RSN instrument CE04OSBP-LJ01C-06-CTDBPO108 Deployment (PLANNED lcstate)
CE04OSBP_LJ01C_06_CTDBPO108_deploy = self.retrieve_ooi_asset(namespace='PRE', alt_id='CE04OSBP-LJ01C-06-CTDBPO108_DEP')
self.dump_deployment(CE04OSBP_LJ01C_06_CTDBPO108_deploy._id)
self.assertEquals(CE04OSBP_LJ01C_06_CTDBPO108_deploy.lcstate, 'PLANNED')
# Set CE04OSBP-LJ01C-06-CTDBPO108 device to DEVELOPED state
CE04OSBP_LJ01C_06_CTDBPO108_device = self.retrieve_ooi_asset(namespace='PRE', alt_id='CE04OSBP-LJ01C-06-CTDBPO108_ID')
self.transition_lcs_then_verify(resource_id=CE04OSBP_LJ01C_06_CTDBPO108_device._id, new_lcs_state=LCE.DEVELOP, verify='DEVELOPED')
# Set CE04OSBP-LJ01C-06-CTDBPO108 device to INTEGRATED state
self.transition_lcs_then_verify(resource_id=CE04OSBP_LJ01C_06_CTDBPO108_device._id, new_lcs_state=LCE.INTEGRATE, verify='INTEGRATED')
# Set CE04OSBP-LJ01C-06-CTDBPO108 device to DEPLOYED state
self.transition_lcs_then_verify(resource_id=CE04OSBP_LJ01C_06_CTDBPO108_device._id, new_lcs_state=LCE.DEPLOY, verify='DEPLOYED')
# Set CE04OSBP-LJ01C-06-CTDBPO108 Deployment to DEPLOYED state
self.transition_lcs_then_verify(resource_id=CE04OSBP_LJ01C_06_CTDBPO108_deploy._id, new_lcs_state=LCE.DEPLOY, verify='DEPLOYED')
# Activate Deployment for CE04OSBP-LJ01C-06-CTDBPO108 instrument
log.debug('--------- activate_deployment CE04OSBP-LJ01C-06-CTDBPO108 deployment -------------- ')
self.OMS.activate_deployment(CE04OSBP_LJ01C_06_CTDBPO108_deploy._id)
self.validate_deployment_activated(CE04OSBP_LJ01C_06_CTDBPO108_deploy._id)
# (optional) Add/register CE04OSBP-LJ01C-06-CTDBPO108 instrument agent to parent agent
# (optional) Start CE04OSBP-LJ01C-06-CTDBPO108 instrument agent with simulator
# Set all DataProducts for CE04OSBP-LJ01C-06-CTDBPO108 to DEPLOYED state
# (optional) Create a substitute Deployment for site CE04OSBP-LJ01C-06-CTDBPO108 with a comparable device
CE04OSBP_LJ01C_06_CTDBPO108_isite = self.retrieve_ooi_asset(namespace='PRE', alt_id='CE04OSBP-LJ01C-06-CTDBPO108')
## create device here: retrieve CTD Mooring on Mooring Riser 001 - similiar?
GP03FLMB_RI001_10_CTDMOG999_ID_idevice = self.retrieve_ooi_asset(namespace='PRE', alt_id='GP03FLMB-RI001-10-CTDMOG999_ID')
deploy_id_2 = self.create_basic_deployment(name='CE04OSBP-LJ01C-06-CTDBPO108_DEP2', description='substitute Deployment for site CE04OSBP-LJ01C-06-CTDBPO108 with a comparable device')
self.IMS.deploy_instrument_device(instrument_device_id=GP03FLMB_RI001_10_CTDMOG999_ID_idevice._id, deployment_id=deploy_id_2)
self.OMS.deploy_instrument_site(instrument_site_id=CE04OSBP_LJ01C_06_CTDBPO108_isite._id, deployment_id=deploy_id_2)
self.dump_deployment(deploy_id_2)
# (optional) Activate this second deployment - check first deployment is deactivated
self.OMS.deactivate_deployment(CE04OSBP_LJ01C_06_CTDBPO108_deploy._id)
self.validate_deployment_deactivated(CE04OSBP_LJ01C_06_CTDBPO108_deploy._id)
log.debug('Activate deployment deploy_id_2')
self.get_deployment_ids(deploy_id_2)
self.dump_deployment(deploy_id_2, "deploy_id_2")
self.OMS.activate_deployment(deploy_id_2)
self.validate_deployment_deactivated(CE04OSBP_LJ01C_06_CTDBPO108_deploy._id)
# (optional) Set first CE04OSBP-LJ01C-06-CTDBPO108 Deployment to INTEGRATED state
self.transition_lcs_then_verify(resource_id=CE04OSBP_LJ01C_06_CTDBPO108_deploy._id, new_lcs_state=LCE.INTEGRATE, verify='INTEGRATED')
# Set first CE04OSBP-LJ01C-06-CTDBPO108 device to INTEGRATED state
self.transition_lcs_then_verify(resource_id=CE04OSBP_LJ01C_06_CTDBPO108_device._id, new_lcs_state=LCE.INTEGRATE, verify='INTEGRATED')
# (optional) Create a third Deployment for site CE04OSBP-LJ01C-06-CTDBPO108 with a same device from first deployment
deploy_id_3 = self.create_basic_deployment(name='CE04OSBP-LJ01C-06-CTDBPO108_DEP3', description='substitute Deployment for site CE04OSBP-LJ01C-06-CTDBPO108 with same device as first')
self.IMS.deploy_instrument_device(instrument_device_id=GP03FLMB_RI001_10_CTDMOG999_ID_idevice._id, deployment_id=deploy_id_3)
self.OMS.deploy_instrument_site(instrument_site_id=CE04OSBP_LJ01C_06_CTDBPO108_isite._id, deployment_id=deploy_id_3)
self.dump_deployment(deploy_id_3)
# Set first CE04OSBP-LJ01C-06-CTDBPO108 device to DEPLOYED state
self.transition_lcs_then_verify(resource_id=CE04OSBP_LJ01C_06_CTDBPO108_device._id, new_lcs_state=LCE.DEPLOY, verify='DEPLOYED')
# (optional) Activate this third deployment - check second deployment is deactivated
log.debug('Activate deployment deploy_id_3')
self.dump_deployment(deploy_id_3)
self.OMS.activate_deployment(deploy_id_3)
#todo: check second deployment is deactivated
# Check that glider GP05MOAS-GL001 assembly is defined by OOI preload (3 instruments)
GP05MOAS_GL001_device = self.retrieve_ooi_asset(namespace='PRE', alt_id='GP05MOAS-GL001_PD')
child_devs, assns =self.RR.find_objects(subject=GP05MOAS_GL001_device._id, predicate=PRED.hasDevice, id_only=True)
self.assertEquals(len(child_devs), 3)
# Set GP05MOAS-GL001 Deployment to DEPLOYED
GP05MOAS_GL001_deploy = self.retrieve_ooi_asset(namespace='PRE', alt_id='GP05MOAS-GL001_DEP')
self.transition_lcs_then_verify(resource_id=GP05MOAS_GL001_deploy._id, new_lcs_state=LCE.DEPLOY, verify='DEPLOYED')
# Activate Deployment for GP05MOAS-GL001
#self.OMS.activate_deployment(GP05MOAS_GL001_deploy._id)
# Deactivate Deployment for GP05MOAS-GL001
#self.OMS.deactivate_deployment(GP05MOAS_GL001_deploy._id)
# Create a new Deployment resource X without any assignment
x_deploy_id = self.create_basic_deployment(name='X_Deployment', description='new Deployment resource X without any assignment')
# Assign Deployment X to site GP05MOAS-GL001
GP05MOAS_GL001_psite = self.retrieve_ooi_asset(namespace='PRE', alt_id='GP05MOAS-GL001')
self.OMS.deploy_platform_site(GP05MOAS_GL001_psite._id, x_deploy_id)
# Assign Deployment X to first device for GP05MOAS-GL001
GP05MOAS_GL001_device = self.retrieve_ooi_asset(namespace='PRE', alt_id='GP05MOAS-GL001_PD')
self.IMS.deploy_platform_device(GP05MOAS_GL001_device._id, x_deploy_id)
# Set GP05MOAS-GL001 Deployment to PLANNED state
#self.transition_lcs_then_verify(resource_id=x_deploy_id, new_lcs_state=LCE.PLAN, verify='PLANNED')
# ??? already in planned
# Set second GP05MOAS-GL001 Deployment to DEPLOYED
self.transition_lcs_then_verify(resource_id=x_deploy_id, new_lcs_state=LCE.DEPLOY, verify='DEPLOYED')
self.dump_deployment(x_deploy_id)
# Activate second Deployment for GP05MOAS-GL001
#self.OMS.activate_deployment(x_deploy_id)
# Deactivate second Deployment for GP05MOAS-GL001
#self.OMS.deactivate_deployment(x_deploy_id)
# Set several CE01ISSM-RI002-* instrument devices to DEVELOPED state
# Assemble several CE01ISSM-RI002-* instruments to a CG CE01ISSM-RI002 component platform
# Set several CE01ISSM-RI002-* instrument devices to INTEGRATED state
# Assemble CE01ISSM-RI002 platform to CG CE01ISSM-LM001 station platform
# Set CE01ISSM-RI002 component device to INTEGRATED state
# Set CE01ISSM-LM001 station device to INTEGRATED state
# Set CE01ISSM-LM001 station device to DEPLOYED state (children maybe too?)
# Set CE01ISSM-LM001 Deployment to DEPLOYED
# Activate CE01ISSM-LM001 platform assembly deployment
# Dectivate CE01ISSM-LM001 platform assembly deployment
# Set CE01ISSM-LM001 Deployment to INTEGRATED state
# Set CE01ISSM-LM001 station device to INTEGRATED state
# Set CE01ISSM-RI002 component device to INTEGRATED state
# Set CE01ISSM-RI002 component device to INTEGRATED state
# Disassemble CE01ISSM-RI002 platform from CG CE01ISSM-LM001 station platform
# Disassemble all CE01ISSM-RI002-* instruments from a CG CE01ISSM-RI002 component platform
# Retire instrument one for CE01ISSM-RI002-*
# Retire device one for CE01ISSM-RI002
# Retire device one for CE01ISSM-LM001
# Add a new instrument agent
# Add a new instrument agent instance
# Check DataProducts
# Check provenance
pass
def retrieve_ooi_asset(self, namespace='', alt_id=''):
dp_list, _ = self.RR.find_resources_ext(alt_id_ns=namespace, alt_id=alt_id)
self.assertEquals(len(dp_list), 1)
return dp_list[0]
def transition_lcs_then_verify(self, resource_id, new_lcs_state, verify):
ret = self.RR2.advance_lcs(resource_id, new_lcs_state)
resource_obj = self.RR.read(resource_id)
self.assertEquals(resource_obj.lcstate, verify)
def create_basic_deployment(self, name='', description=''):
start = IonTime(datetime.datetime(2013,1,1))
end = IonTime(datetime.datetime(2014,1,1))
temporal_bounds = IonObject(OT.TemporalBounds, name='planned', start_datetime=start.to_string(), end_datetime=end.to_string())
deployment_obj = IonObject(RT.Deployment,
name=name,
description=description,
context=IonObject(OT.CabledNodeDeploymentContext),
constraint_list=[temporal_bounds])
return self.OMS.create_deployment(deployment_obj)
def validate_deployment_activated(self, deployment_id=''):
site_id, device_id = self.get_deployment_ids(deployment_id)
assocs = self.RR.find_associations(subject=site_id, predicate=PRED.hasDevice, object=device_id)
self.assertEquals(len(assocs), 1)
def validate_deployment_deactivated(self, deployment_id=''):
site_id, device_id = self.get_deployment_ids(deployment_id)
assocs = self.RR.find_associations(subject=site_id, predicate=PRED.hasDevice, object=device_id)
self.assertEquals(len(assocs), 0)
def dump_deployment(self, deployment_id='', name=""):
#site_id, device_id = self.get_deployment_ids(deployment_id)
resource_list,_ = self.RR.find_subjects(predicate=PRED.hasDeployment, object=deployment_id, id_only=True)
resource_list.append(deployment_id)
resources = self.RR.read_mult(resource_list )
log.debug('--------- dump_deployment %s summary---------------', name)
for resource in resources:
log.debug('%s: %s (%s)', resource._get_type(), resource.name, resource._id)
log.debug('--------- dump_deployment %s full dump ---------------', name)
for resource in resources:
log.debug('resource: %s ', resource)
log.debug('--------- dump_deployment %s end ---------------', name)
#assocs = self.container.resource_registry.find_assoctiations(anyside=deployment_id)
# assocs = Container.instance.resource_registry.find_assoctiations(anyside=deployment_id)
# log.debug('--------- dump_deployment ---------------')
# for assoc in assocs:
# log.debug('SUBJECT: %s PREDICATE: %s OBJET: %s', assoc.s, assoc.p, assoc.o)
# log.debug('--------- dump_deployment end ---------------')
def get_deployment_ids(self, deployment_id=''):
devices = []
sites = []
idevice_list,_ = self.RR.find_subjects(RT.InstrumentDevice, PRED.hasDeployment, deployment_id, id_only=True)
pdevice_list,_ = self.RR.find_subjects(RT.PlatformDevice, PRED.hasDeployment, deployment_id, id_only=True)
devices = idevice_list + pdevice_list
self.assertEquals(1, len(devices))
isite_list,_ = self.RR.find_subjects(RT.InstrumentSite, PRED.hasDeployment, deployment_id, id_only=True)
psite_list,_ = self.RR.find_subjects(RT.PlatformSite, PRED.hasDeployment, deployment_id, id_only=True)
sites = isite_list + psite_list
self.assertEquals(1, len(sites))
return sites[0], devices[0]
class PubsubManagementIntTest(IonIntegrationTestCase):
def setUp(self):
self._start_container()
self.container.start_rel_from_url('res/deploy/r2deploy.yml')
self.pubsub_management = PubsubManagementServiceClient()
self.resource_registry = ResourceRegistryServiceClient()
self.dataset_management = DatasetManagementServiceClient()
self.pdicts = {}
self.queue_cleanup = list()
self.exchange_cleanup = list()
def tearDown(self):
for queue in self.queue_cleanup:
xn = self.container.ex_manager.create_xn_queue(queue)
xn.delete()
for exchange in self.exchange_cleanup:
xp = self.container.ex_manager.create_xp(exchange)
xp.delete()
def test_stream_def_crud(self):
# Test Creation
pdict = DatasetManagementService.get_parameter_dictionary_by_name(
'ctd_parsed_param_dict')
stream_definition_id = self.pubsub_management.create_stream_definition(
'ctd parsed', parameter_dictionary_id=pdict.identifier)
# Make sure there is an assoc
self.assertTrue(
self.resource_registry.find_associations(
subject=stream_definition_id,
predicate=PRED.hasParameterDictionary,
object=pdict.identifier,
id_only=True))
# Test Reading
stream_definition = self.pubsub_management.read_stream_definition(
stream_definition_id)
self.assertTrue(
PubsubManagementService._compare_pdicts(
pdict.dump(), stream_definition.parameter_dictionary))
# Test Deleting
self.pubsub_management.delete_stream_definition(stream_definition_id)
self.assertFalse(
self.resource_registry.find_associations(
subject=stream_definition_id,
predicate=PRED.hasParameterDictionary,
object=pdict.identifier,
id_only=True))
# Test comparisons
in_stream_definition_id = self.pubsub_management.create_stream_definition(
'L0 products',
parameter_dictionary_id=pdict.identifier,
available_fields=['time', 'temp', 'conductivity', 'pressure'])
self.addCleanup(self.pubsub_management.delete_stream_definition,
in_stream_definition_id)
out_stream_definition_id = in_stream_definition_id
self.assertTrue(
self.pubsub_management.compare_stream_definition(
in_stream_definition_id, out_stream_definition_id))
self.assertTrue(
self.pubsub_management.compatible_stream_definitions(
in_stream_definition_id, out_stream_definition_id))
out_stream_definition_id = self.pubsub_management.create_stream_definition(
'L2 Products',
parameter_dictionary_id=pdict.identifier,
available_fields=['time', 'salinity', 'density'])
self.addCleanup(self.pubsub_management.delete_stream_definition,
out_stream_definition_id)
self.assertFalse(
self.pubsub_management.compare_stream_definition(
in_stream_definition_id, out_stream_definition_id))
self.assertTrue(
self.pubsub_management.compatible_stream_definitions(
in_stream_definition_id, out_stream_definition_id))
def test_validate_stream_defs(self):
#test no input
incoming_pdict_id = self._get_pdict(
['TIME', 'LAT', 'LON', 'TEMPWAT_L0', 'CONDWAT_L0', 'PRESWAT_L0'])
outgoing_pdict_id = self._get_pdict(
['DENSITY', 'PRACSAL', 'TEMPWAT_L1', 'CONDWAT_L1', 'PRESWAT_L1'])
available_fields_in = []
available_fields_out = []
incoming_stream_def_id = self.pubsub_management.create_stream_definition(
'in_sd_0',
parameter_dictionary_id=incoming_pdict_id,
available_fields=available_fields_in)
outgoing_stream_def_id = self.pubsub_management.create_stream_definition(
'out_sd_0',
parameter_dictionary_id=outgoing_pdict_id,
available_fields=available_fields_out)
result = self.pubsub_management.validate_stream_defs(
incoming_stream_def_id, outgoing_stream_def_id)
self.assertFalse(result)
#test input with no output
incoming_pdict_id = self._get_pdict(
['TIME', 'LAT', 'LON', 'TEMPWAT_L0', 'CONDWAT_L0', 'PRESWAT_L0'])
outgoing_pdict_id = self._get_pdict(
['DENSITY', 'PRACSAL', 'TEMPWAT_L1', 'CONDWAT_L1', 'PRESWAT_L1'])
available_fields_in = [
'TIME', 'LAT', 'LON', 'TEMPWAT_L0', 'CONDWAT_L0', 'PRESWAT_L0'
]
available_fields_out = []
incoming_stream_def_id = self.pubsub_management.create_stream_definition(
'in_sd_1',
parameter_dictionary_id=incoming_pdict_id,
available_fields=available_fields_in)
outgoing_stream_def_id = self.pubsub_management.create_stream_definition(
'out_sd_1',
parameter_dictionary_id=outgoing_pdict_id,
available_fields=available_fields_out)
result = self.pubsub_management.validate_stream_defs(
incoming_stream_def_id, outgoing_stream_def_id)
self.assertTrue(result)
#test available field missing parameter context definition -- missing PRESWAT_L0
incoming_pdict_id = self._get_pdict(
['TIME', 'LAT', 'LON', 'TEMPWAT_L0', 'CONDWAT_L0'])
outgoing_pdict_id = self._get_pdict(
['DENSITY', 'PRACSAL', 'TEMPWAT_L1', 'CONDWAT_L1', 'PRESWAT_L1'])
available_fields_in = [
'TIME', 'LAT', 'LON', 'TEMPWAT_L0', 'CONDWAT_L0', 'PRESWAT_L0'
]
available_fields_out = ['DENSITY']
incoming_stream_def_id = self.pubsub_management.create_stream_definition(
'in_sd_2',
parameter_dictionary_id=incoming_pdict_id,
available_fields=available_fields_in)
outgoing_stream_def_id = self.pubsub_management.create_stream_definition(
'out_sd_2',
parameter_dictionary_id=outgoing_pdict_id,
available_fields=available_fields_out)
result = self.pubsub_management.validate_stream_defs(
incoming_stream_def_id, outgoing_stream_def_id)
self.assertFalse(result)
#test l1 from l0
incoming_pdict_id = self._get_pdict(
['TIME', 'LAT', 'LON', 'TEMPWAT_L0', 'CONDWAT_L0', 'PRESWAT_L0'])
outgoing_pdict_id = self._get_pdict(
['TEMPWAT_L1', 'CONDWAT_L1', 'PRESWAT_L1'])
available_fields_in = [
'TIME', 'LAT', 'LON', 'TEMPWAT_L0', 'CONDWAT_L0', 'PRESWAT_L0'
]
available_fields_out = ['TEMPWAT_L1', 'CONDWAT_L1', 'PRESWAT_L1']
incoming_stream_def_id = self.pubsub_management.create_stream_definition(
'in_sd_3',
parameter_dictionary_id=incoming_pdict_id,
available_fields=available_fields_in)
outgoing_stream_def_id = self.pubsub_management.create_stream_definition(
'out_sd_3',
parameter_dictionary_id=outgoing_pdict_id,
available_fields=available_fields_out)
result = self.pubsub_management.validate_stream_defs(
incoming_stream_def_id, outgoing_stream_def_id)
self.assertTrue(result)
#test l2 from l0
incoming_pdict_id = self._get_pdict(
['TIME', 'LAT', 'LON', 'TEMPWAT_L0', 'CONDWAT_L0', 'PRESWAT_L0'])
outgoing_pdict_id = self._get_pdict(
['TEMPWAT_L1', 'CONDWAT_L1', 'PRESWAT_L1', 'DENSITY', 'PRACSAL'])
available_fields_in = [
'TIME', 'LAT', 'LON', 'TEMPWAT_L0', 'CONDWAT_L0', 'PRESWAT_L0'
]
available_fields_out = ['DENSITY', 'PRACSAL']
incoming_stream_def_id = self.pubsub_management.create_stream_definition(
'in_sd_4',
parameter_dictionary_id=incoming_pdict_id,
available_fields=available_fields_in)
outgoing_stream_def_id = self.pubsub_management.create_stream_definition(
'out_sd_4',
parameter_dictionary_id=outgoing_pdict_id,
available_fields=available_fields_out)
result = self.pubsub_management.validate_stream_defs(
incoming_stream_def_id, outgoing_stream_def_id)
self.assertTrue(result)
#test Ln from L0
incoming_pdict_id = self._get_pdict(
['TIME', 'LAT', 'LON', 'TEMPWAT_L0', 'CONDWAT_L0', 'PRESWAT_L0'])
outgoing_pdict_id = self._get_pdict(
['DENSITY', 'PRACSAL', 'TEMPWAT_L1', 'CONDWAT_L1', 'PRESWAT_L1'])
available_fields_in = [
'TIME', 'LAT', 'LON', 'TEMPWAT_L0', 'CONDWAT_L0', 'PRESWAT_L0'
]
available_fields_out = [
'DENSITY', 'PRACSAL', 'TEMPWAT_L1', 'CONDWAT_L1', 'PRESWAT_L1'
]
incoming_stream_def_id = self.pubsub_management.create_stream_definition(
'in_sd_5',
parameter_dictionary_id=incoming_pdict_id,
available_fields=available_fields_in)
outgoing_stream_def_id = self.pubsub_management.create_stream_definition(
'out_sd_5',
parameter_dictionary_id=outgoing_pdict_id,
available_fields=available_fields_out)
result = self.pubsub_management.validate_stream_defs(
incoming_stream_def_id, outgoing_stream_def_id)
self.assertTrue(result)
#test L2 from L1
incoming_pdict_id = self._get_pdict(
['TIME', 'LAT', 'LON', 'TEMPWAT_L1', 'CONDWAT_L1', 'PRESWAT_L1'])
outgoing_pdict_id = self._get_pdict(
['DENSITY', 'PRACSAL', 'TEMPWAT_L1', 'CONDWAT_L1', 'PRESWAT_L1'])
available_fields_in = [
'TIME', 'LAT', 'LON', 'TEMPWAT_L1', 'CONDWAT_L1', 'PRESWAT_L1'
]
available_fields_out = ['DENSITY', 'PRACSAL']
incoming_stream_def_id = self.pubsub_management.create_stream_definition(
'in_sd_6',
parameter_dictionary_id=incoming_pdict_id,
available_fields=available_fields_in)
outgoing_stream_def_id = self.pubsub_management.create_stream_definition(
'out_sd_6',
parameter_dictionary_id=outgoing_pdict_id,
available_fields=available_fields_out)
result = self.pubsub_management.validate_stream_defs(
incoming_stream_def_id, outgoing_stream_def_id)
self.assertTrue(result)
#test L1 from L0 missing L0
incoming_pdict_id = self._get_pdict(['TIME', 'LAT', 'LON'])
outgoing_pdict_id = self._get_pdict(
['TEMPWAT_L1', 'CONDWAT_L1', 'PRESWAT_L1'])
available_fields_in = ['TIME', 'LAT', 'LON']
available_fields_out = ['DENSITY', 'PRACSAL']
incoming_stream_def_id = self.pubsub_management.create_stream_definition(
'in_sd_7',
parameter_dictionary_id=incoming_pdict_id,
available_fields=available_fields_in)
outgoing_stream_def_id = self.pubsub_management.create_stream_definition(
'out_sd_7',
parameter_dictionary_id=outgoing_pdict_id,
available_fields=available_fields_out)
result = self.pubsub_management.validate_stream_defs(
incoming_stream_def_id, outgoing_stream_def_id)
self.assertFalse(result)
#test L2 from L0 missing L0
incoming_pdict_id = self._get_pdict(['TIME', 'LAT', 'LON'])
outgoing_pdict_id = self._get_pdict(
['DENSITY', 'PRACSAL', 'TEMPWAT_L1', 'CONDWAT_L1', 'PRESWAT_L1'])
available_fields_in = ['TIME', 'LAT', 'LON']
available_fields_out = ['DENSITY', 'PRACSAL']
incoming_stream_def_id = self.pubsub_management.create_stream_definition(
'in_sd_8',
parameter_dictionary_id=incoming_pdict_id,
available_fields=available_fields_in)
outgoing_stream_def_id = self.pubsub_management.create_stream_definition(
'out_sd_8',
parameter_dictionary_id=outgoing_pdict_id,
available_fields=available_fields_out)
result = self.pubsub_management.validate_stream_defs(
incoming_stream_def_id, outgoing_stream_def_id)
self.assertFalse(result)
#test L2 from L0 missing L1
incoming_pdict_id = self._get_pdict(
['TIME', 'LAT', 'LON', 'TEMPWAT_L0', 'CONDWAT_L0', 'PRESWAT_L0'])
outgoing_pdict_id = self._get_pdict(['DENSITY', 'PRACSAL'])
available_fields_in = [
'TIME', 'LAT', 'LON', 'TEMPWAT_L0', 'CONDWAT_L0', 'PRESWAT_L0'
]
available_fields_out = ['DENSITY', 'PRACSAL']
incoming_stream_def_id = self.pubsub_management.create_stream_definition(
'in_sd_9',
parameter_dictionary_id=incoming_pdict_id,
available_fields=available_fields_in)
outgoing_stream_def_id = self.pubsub_management.create_stream_definition(
'out_sd_9',
parameter_dictionary_id=outgoing_pdict_id,
available_fields=available_fields_out)
result = self.pubsub_management.validate_stream_defs(
incoming_stream_def_id, outgoing_stream_def_id)
self.assertFalse(result)
def publish_on_stream(self, stream_id, msg):
stream = self.pubsub_management.read_stream(stream_id)
stream_route = stream.stream_route
publisher = StandaloneStreamPublisher(stream_id=stream_id,
stream_route=stream_route)
publisher.publish(msg)
def test_stream_crud(self):
stream_def_id = self.pubsub_management.create_stream_definition(
'test_definition', stream_type='stream')
topic_id = self.pubsub_management.create_topic(
name='test_topic', exchange_point='test_exchange')
self.exchange_cleanup.append('test_exchange')
topic2_id = self.pubsub_management.create_topic(
name='another_topic', exchange_point='outside')
stream_id, route = self.pubsub_management.create_stream(
name='test_stream',
topic_ids=[topic_id, topic2_id],
exchange_point='test_exchange',
stream_definition_id=stream_def_id)
topics, assocs = self.resource_registry.find_objects(
subject=stream_id, predicate=PRED.hasTopic, id_only=True)
self.assertEquals(topics, [topic_id])
defs, assocs = self.resource_registry.find_objects(
subject=stream_id,
predicate=PRED.hasStreamDefinition,
id_only=True)
self.assertTrue(len(defs))
stream = self.pubsub_management.read_stream(stream_id)
self.assertEquals(stream.name, 'test_stream')
self.pubsub_management.delete_stream(stream_id)
with self.assertRaises(NotFound):
self.pubsub_management.read_stream(stream_id)
defs, assocs = self.resource_registry.find_objects(
subject=stream_id,
predicate=PRED.hasStreamDefinition,
id_only=True)
self.assertFalse(len(defs))
topics, assocs = self.resource_registry.find_objects(
subject=stream_id, predicate=PRED.hasTopic, id_only=True)
self.assertFalse(len(topics))
self.pubsub_management.delete_topic(topic_id)
self.pubsub_management.delete_topic(topic2_id)
self.pubsub_management.delete_stream_definition(stream_def_id)
def test_subscription_crud(self):
stream_def_id = self.pubsub_management.create_stream_definition(
'test_definition', stream_type='stream')
stream_id, route = self.pubsub_management.create_stream(
name='test_stream',
exchange_point='test_exchange',
stream_definition_id=stream_def_id)
subscription_id = self.pubsub_management.create_subscription(
name='test subscription',
stream_ids=[stream_id],
exchange_name='test_queue')
self.exchange_cleanup.append('test_exchange')
subs, assocs = self.resource_registry.find_objects(
subject=subscription_id, predicate=PRED.hasStream, id_only=True)
self.assertEquals(subs, [stream_id])
res, _ = self.resource_registry.find_resources(restype=RT.ExchangeName,
name='test_queue',
id_only=True)
self.assertEquals(len(res), 1)
subs, assocs = self.resource_registry.find_subjects(
object=subscription_id,
predicate=PRED.hasSubscription,
id_only=True)
self.assertEquals(subs[0], res[0])
subscription = self.pubsub_management.read_subscription(
subscription_id)
self.assertEquals(subscription.exchange_name, 'test_queue')
self.pubsub_management.delete_subscription(subscription_id)
subs, assocs = self.resource_registry.find_objects(
subject=subscription_id, predicate=PRED.hasStream, id_only=True)
self.assertFalse(len(subs))
subs, assocs = self.resource_registry.find_subjects(
object=subscription_id,
predicate=PRED.hasSubscription,
id_only=True)
self.assertFalse(len(subs))
self.pubsub_management.delete_stream(stream_id)
self.pubsub_management.delete_stream_definition(stream_def_id)
def test_move_before_activate(self):
stream_id, route = self.pubsub_management.create_stream(
name='test_stream', exchange_point='test_xp')
#--------------------------------------------------------------------------------
# Test moving before activate
#--------------------------------------------------------------------------------
subscription_id = self.pubsub_management.create_subscription(
'first_queue', stream_ids=[stream_id])
xn_ids, _ = self.resource_registry.find_resources(
restype=RT.ExchangeName, name='first_queue', id_only=True)
subjects, _ = self.resource_registry.find_subjects(
object=subscription_id,
predicate=PRED.hasSubscription,
id_only=True)
self.assertEquals(xn_ids[0], subjects[0])
self.pubsub_management.move_subscription(subscription_id,
exchange_name='second_queue')
xn_ids, _ = self.resource_registry.find_resources(
restype=RT.ExchangeName, name='second_queue', id_only=True)
subjects, _ = self.resource_registry.find_subjects(
object=subscription_id,
predicate=PRED.hasSubscription,
id_only=True)
self.assertEquals(len(subjects), 1)
self.assertEquals(subjects[0], xn_ids[0])
self.pubsub_management.delete_subscription(subscription_id)
self.pubsub_management.delete_stream(stream_id)
def test_move_activated_subscription(self):
stream_id, route = self.pubsub_management.create_stream(
name='test_stream', exchange_point='test_xp')
#--------------------------------------------------------------------------------
# Test moving after activate
#--------------------------------------------------------------------------------
subscription_id = self.pubsub_management.create_subscription(
'first_queue', stream_ids=[stream_id])
self.pubsub_management.activate_subscription(subscription_id)
xn_ids, _ = self.resource_registry.find_resources(
restype=RT.ExchangeName, name='first_queue', id_only=True)
subjects, _ = self.resource_registry.find_subjects(
object=subscription_id,
predicate=PRED.hasSubscription,
id_only=True)
self.assertEquals(xn_ids[0], subjects[0])
self.verified = Event()
def verify(m, r, s):
self.assertEquals(m, 'verified')
self.verified.set()
subscriber = StandaloneStreamSubscriber('second_queue', verify)
subscriber.start()
self.pubsub_management.move_subscription(subscription_id,
exchange_name='second_queue')
xn_ids, _ = self.resource_registry.find_resources(
restype=RT.ExchangeName, name='second_queue', id_only=True)
subjects, _ = self.resource_registry.find_subjects(
object=subscription_id,
predicate=PRED.hasSubscription,
id_only=True)
self.assertEquals(len(subjects), 1)
self.assertEquals(subjects[0], xn_ids[0])
publisher = StandaloneStreamPublisher(stream_id, route)
publisher.publish('verified')
self.assertTrue(self.verified.wait(2))
self.pubsub_management.deactivate_subscription(subscription_id)
self.pubsub_management.delete_subscription(subscription_id)
self.pubsub_management.delete_stream(stream_id)
def test_queue_cleanup(self):
stream_id, route = self.pubsub_management.create_stream(
'test_stream', 'xp1')
xn_objs, _ = self.resource_registry.find_resources(
restype=RT.ExchangeName, name='queue1')
for xn_obj in xn_objs:
xn = self.container.ex_manager.create_xn_queue(xn_obj.name)
xn.delete()
subscription_id = self.pubsub_management.create_subscription(
'queue1', stream_ids=[stream_id])
xn_ids, _ = self.resource_registry.find_resources(
restype=RT.ExchangeName, name='queue1')
self.assertEquals(len(xn_ids), 1)
self.pubsub_management.delete_subscription(subscription_id)
xn_ids, _ = self.resource_registry.find_resources(
restype=RT.ExchangeName, name='queue1')
self.assertEquals(len(xn_ids), 0)
def test_activation_and_deactivation(self):
stream_id, route = self.pubsub_management.create_stream(
'stream1', 'xp1')
subscription_id = self.pubsub_management.create_subscription(
'sub1', stream_ids=[stream_id])
self.check1 = Event()
def verifier(m, r, s):
self.check1.set()
subscriber = StandaloneStreamSubscriber('sub1', verifier)
subscriber.start()
publisher = StandaloneStreamPublisher(stream_id, route)
publisher.publish('should not receive')
self.assertFalse(self.check1.wait(0.25))
self.pubsub_management.activate_subscription(subscription_id)
publisher.publish('should receive')
self.assertTrue(self.check1.wait(2))
self.check1.clear()
self.assertFalse(self.check1.is_set())
self.pubsub_management.deactivate_subscription(subscription_id)
publisher.publish('should not receive')
self.assertFalse(self.check1.wait(0.5))
self.pubsub_management.activate_subscription(subscription_id)
publisher.publish('should receive')
self.assertTrue(self.check1.wait(2))
subscriber.stop()
self.pubsub_management.deactivate_subscription(subscription_id)
self.pubsub_management.delete_subscription(subscription_id)
self.pubsub_management.delete_stream(stream_id)
def test_topic_crud(self):
topic_id = self.pubsub_management.create_topic(
name='test_topic', exchange_point='test_xp')
self.exchange_cleanup.append('test_xp')
topic = self.pubsub_management.read_topic(topic_id)
self.assertEquals(topic.name, 'test_topic')
self.assertEquals(topic.exchange_point, 'test_xp')
self.pubsub_management.delete_topic(topic_id)
with self.assertRaises(NotFound):
self.pubsub_management.read_topic(topic_id)
def test_full_pubsub(self):
self.sub1_sat = Event()
self.sub2_sat = Event()
def subscriber1(m, r, s):
self.sub1_sat.set()
def subscriber2(m, r, s):
self.sub2_sat.set()
sub1 = StandaloneStreamSubscriber('sub1', subscriber1)
self.queue_cleanup.append(sub1.xn.queue)
sub1.start()
sub2 = StandaloneStreamSubscriber('sub2', subscriber2)
self.queue_cleanup.append(sub2.xn.queue)
sub2.start()
log_topic = self.pubsub_management.create_topic(
'instrument_logs', exchange_point='instruments')
science_topic = self.pubsub_management.create_topic(
'science_data', exchange_point='instruments')
events_topic = self.pubsub_management.create_topic(
'notifications', exchange_point='events')
log_stream, route = self.pubsub_management.create_stream(
'instrument1-logs',
topic_ids=[log_topic],
exchange_point='instruments')
ctd_stream, route = self.pubsub_management.create_stream(
'instrument1-ctd',
topic_ids=[science_topic],
exchange_point='instruments')
event_stream, route = self.pubsub_management.create_stream(
'notifications', topic_ids=[events_topic], exchange_point='events')
raw_stream, route = self.pubsub_management.create_stream(
'temp', exchange_point='global.data')
self.exchange_cleanup.extend(['instruments', 'events', 'global.data'])
subscription1 = self.pubsub_management.create_subscription(
'subscription1',
stream_ids=[log_stream, event_stream],
exchange_name='sub1')
subscription2 = self.pubsub_management.create_subscription(
'subscription2',
exchange_points=['global.data'],
stream_ids=[ctd_stream],
exchange_name='sub2')
self.pubsub_management.activate_subscription(subscription1)
self.pubsub_management.activate_subscription(subscription2)
self.publish_on_stream(log_stream, 1)
self.assertTrue(self.sub1_sat.wait(4))
self.assertFalse(self.sub2_sat.is_set())
self.publish_on_stream(raw_stream, 1)
self.assertTrue(self.sub1_sat.wait(4))
sub1.stop()
sub2.stop()
def test_topic_craziness(self):
self.msg_queue = Queue()
def subscriber1(m, r, s):
self.msg_queue.put(m)
sub1 = StandaloneStreamSubscriber('sub1', subscriber1)
self.queue_cleanup.append(sub1.xn.queue)
sub1.start()
topic1 = self.pubsub_management.create_topic('topic1',
exchange_point='xp1')
topic2 = self.pubsub_management.create_topic('topic2',
exchange_point='xp1',
parent_topic_id=topic1)
topic3 = self.pubsub_management.create_topic('topic3',
exchange_point='xp1',
parent_topic_id=topic1)
topic4 = self.pubsub_management.create_topic('topic4',
exchange_point='xp1',
parent_topic_id=topic2)
topic5 = self.pubsub_management.create_topic('topic5',
exchange_point='xp1',
parent_topic_id=topic2)
topic6 = self.pubsub_management.create_topic('topic6',
exchange_point='xp1',
parent_topic_id=topic3)
topic7 = self.pubsub_management.create_topic('topic7',
exchange_point='xp1',
parent_topic_id=topic3)
# Tree 2
topic8 = self.pubsub_management.create_topic('topic8',
exchange_point='xp2')
topic9 = self.pubsub_management.create_topic('topic9',
exchange_point='xp2',
parent_topic_id=topic8)
topic10 = self.pubsub_management.create_topic('topic10',
exchange_point='xp2',
parent_topic_id=topic9)
topic11 = self.pubsub_management.create_topic('topic11',
exchange_point='xp2',
parent_topic_id=topic9)
topic12 = self.pubsub_management.create_topic('topic12',
exchange_point='xp2',
parent_topic_id=topic11)
topic13 = self.pubsub_management.create_topic('topic13',
exchange_point='xp2',
parent_topic_id=topic11)
self.exchange_cleanup.extend(['xp1', 'xp2'])
stream1_id, route = self.pubsub_management.create_stream(
'stream1',
topic_ids=[topic7, topic4, topic5],
exchange_point='xp1')
stream2_id, route = self.pubsub_management.create_stream(
'stream2', topic_ids=[topic8], exchange_point='xp2')
stream3_id, route = self.pubsub_management.create_stream(
'stream3', topic_ids=[topic10, topic13], exchange_point='xp2')
stream4_id, route = self.pubsub_management.create_stream(
'stream4', topic_ids=[topic9], exchange_point='xp2')
stream5_id, route = self.pubsub_management.create_stream(
'stream5', topic_ids=[topic11], exchange_point='xp2')
subscription1 = self.pubsub_management.create_subscription(
'sub1', topic_ids=[topic1])
subscription2 = self.pubsub_management.create_subscription(
'sub2', topic_ids=[topic8], exchange_name='sub1')
subscription3 = self.pubsub_management.create_subscription(
'sub3', topic_ids=[topic9], exchange_name='sub1')
subscription4 = self.pubsub_management.create_subscription(
'sub4',
topic_ids=[topic10, topic13, topic11],
exchange_name='sub1')
#--------------------------------------------------------------------------------
self.pubsub_management.activate_subscription(subscription1)
self.publish_on_stream(stream1_id, 1)
self.assertEquals(self.msg_queue.get(timeout=10), 1)
with self.assertRaises(Empty):
self.msg_queue.get(timeout=0.1)
self.pubsub_management.deactivate_subscription(subscription1)
self.pubsub_management.delete_subscription(subscription1)
#--------------------------------------------------------------------------------
self.pubsub_management.activate_subscription(subscription2)
self.publish_on_stream(stream2_id, 2)
self.assertEquals(self.msg_queue.get(timeout=10), 2)
with self.assertRaises(Empty):
self.msg_queue.get(timeout=0.1)
self.pubsub_management.deactivate_subscription(subscription2)
self.pubsub_management.delete_subscription(subscription2)
#--------------------------------------------------------------------------------
self.pubsub_management.activate_subscription(subscription3)
self.publish_on_stream(stream2_id, 3)
with self.assertRaises(Empty):
self.msg_queue.get(timeout=0.3)
self.publish_on_stream(stream3_id, 4)
self.assertEquals(self.msg_queue.get(timeout=10), 4)
self.pubsub_management.deactivate_subscription(subscription3)
self.pubsub_management.delete_subscription(subscription3)
#--------------------------------------------------------------------------------
self.pubsub_management.activate_subscription(subscription4)
self.publish_on_stream(stream4_id, 5)
with self.assertRaises(Empty):
self.msg_queue.get(timeout=0.3)
self.publish_on_stream(stream5_id, 6)
self.assertEquals(self.msg_queue.get(timeout=10), 6)
with self.assertRaises(Empty):
self.msg_queue.get(timeout=0.3)
self.pubsub_management.deactivate_subscription(subscription4)
self.pubsub_management.delete_subscription(subscription4)
#--------------------------------------------------------------------------------
sub1.stop()
self.pubsub_management.delete_topic(topic13)
self.pubsub_management.delete_topic(topic12)
self.pubsub_management.delete_topic(topic11)
self.pubsub_management.delete_topic(topic10)
self.pubsub_management.delete_topic(topic9)
self.pubsub_management.delete_topic(topic8)
self.pubsub_management.delete_topic(topic7)
self.pubsub_management.delete_topic(topic6)
self.pubsub_management.delete_topic(topic5)
self.pubsub_management.delete_topic(topic4)
self.pubsub_management.delete_topic(topic3)
self.pubsub_management.delete_topic(topic2)
self.pubsub_management.delete_topic(topic1)
self.pubsub_management.delete_stream(stream1_id)
self.pubsub_management.delete_stream(stream2_id)
self.pubsub_management.delete_stream(stream3_id)
self.pubsub_management.delete_stream(stream4_id)
self.pubsub_management.delete_stream(stream5_id)
def _get_pdict(self, filter_values):
t_ctxt = ParameterContext(
'TIME', param_type=QuantityType(value_encoding=np.dtype('int64')))
t_ctxt.uom = 'seconds since 01-01-1900'
t_ctxt_id = self.dataset_management.create_parameter_context(
name='TIME',
parameter_context=t_ctxt.dump(),
parameter_type='quantity<int64>',
unit_of_measure=t_ctxt.uom)
lat_ctxt = ParameterContext(
'LAT',
param_type=ConstantType(
QuantityType(value_encoding=np.dtype('float32'))),
fill_value=-9999)
lat_ctxt.axis = AxisTypeEnum.LAT
lat_ctxt.uom = 'degree_north'
lat_ctxt_id = self.dataset_management.create_parameter_context(
name='LAT',
parameter_context=lat_ctxt.dump(),
parameter_type='quantity<float32>',
unit_of_measure=lat_ctxt.uom)
lon_ctxt = ParameterContext(
'LON',
param_type=ConstantType(
QuantityType(value_encoding=np.dtype('float32'))),
fill_value=-9999)
lon_ctxt.axis = AxisTypeEnum.LON
lon_ctxt.uom = 'degree_east'
lon_ctxt_id = self.dataset_management.create_parameter_context(
name='LON',
parameter_context=lon_ctxt.dump(),
parameter_type='quantity<float32>',
unit_of_measure=lon_ctxt.uom)
# Independent Parameters
# Temperature - values expected to be the decimal results of conversion from hex
temp_ctxt = ParameterContext(
'TEMPWAT_L0',
param_type=QuantityType(value_encoding=np.dtype('float32')),
fill_value=-9999)
temp_ctxt.uom = 'deg_C'
temp_ctxt_id = self.dataset_management.create_parameter_context(
name='TEMPWAT_L0',
parameter_context=temp_ctxt.dump(),
parameter_type='quantity<float32>',
unit_of_measure=temp_ctxt.uom)
# Conductivity - values expected to be the decimal results of conversion from hex
cond_ctxt = ParameterContext(
'CONDWAT_L0',
param_type=QuantityType(value_encoding=np.dtype('float32')),
fill_value=-9999)
cond_ctxt.uom = 'S m-1'
cond_ctxt_id = self.dataset_management.create_parameter_context(
name='CONDWAT_L0',
parameter_context=cond_ctxt.dump(),
parameter_type='quantity<float32>',
unit_of_measure=cond_ctxt.uom)
# Pressure - values expected to be the decimal results of conversion from hex
press_ctxt = ParameterContext(
'PRESWAT_L0',
param_type=QuantityType(value_encoding=np.dtype('float32')),
fill_value=-9999)
press_ctxt.uom = 'dbar'
press_ctxt_id = self.dataset_management.create_parameter_context(
name='PRESWAT_L0',
parameter_context=press_ctxt.dump(),
parameter_type='quantity<float32>',
unit_of_measure=press_ctxt.uom)
# Dependent Parameters
# TEMPWAT_L1 = (TEMPWAT_L0 / 10000) - 10
tl1_func = '(T / 10000) - 10'
tl1_pmap = {'T': 'TEMPWAT_L0'}
expr = NumexprFunction('TEMPWAT_L1',
tl1_func, ['T'],
param_map=tl1_pmap)
tempL1_ctxt = ParameterContext(
'TEMPWAT_L1',
param_type=ParameterFunctionType(function=expr),
variability=VariabilityEnum.TEMPORAL)
tempL1_ctxt.uom = 'deg_C'
tempL1_ctxt_id = self.dataset_management.create_parameter_context(
name=tempL1_ctxt.name,
parameter_context=tempL1_ctxt.dump(),
parameter_type='pfunc',
unit_of_measure=tempL1_ctxt.uom)
# CONDWAT_L1 = (CONDWAT_L0 / 100000) - 0.5
cl1_func = '(C / 100000) - 0.5'
cl1_pmap = {'C': 'CONDWAT_L0'}
expr = NumexprFunction('CONDWAT_L1',
cl1_func, ['C'],
param_map=cl1_pmap)
condL1_ctxt = ParameterContext(
'CONDWAT_L1',
param_type=ParameterFunctionType(function=expr),
variability=VariabilityEnum.TEMPORAL)
condL1_ctxt.uom = 'S m-1'
condL1_ctxt_id = self.dataset_management.create_parameter_context(
name=condL1_ctxt.name,
parameter_context=condL1_ctxt.dump(),
parameter_type='pfunc',
unit_of_measure=condL1_ctxt.uom)
# Equation uses p_range, which is a calibration coefficient - Fixing to 679.34040721
# PRESWAT_L1 = (PRESWAT_L0 * p_range / (0.85 * 65536)) - (0.05 * p_range)
pl1_func = '(P * p_range / (0.85 * 65536)) - (0.05 * p_range)'
pl1_pmap = {'P': 'PRESWAT_L0', 'p_range': 679.34040721}
expr = NumexprFunction('PRESWAT_L1',
pl1_func, ['P', 'p_range'],
param_map=pl1_pmap)
presL1_ctxt = ParameterContext(
'PRESWAT_L1',
param_type=ParameterFunctionType(function=expr),
variability=VariabilityEnum.TEMPORAL)
presL1_ctxt.uom = 'S m-1'
presL1_ctxt_id = self.dataset_management.create_parameter_context(
name=presL1_ctxt.name,
parameter_context=presL1_ctxt.dump(),
parameter_type='pfunc',
unit_of_measure=presL1_ctxt.uom)
# Density & practical salinity calucluated using the Gibbs Seawater library - available via python-gsw project:
# https://code.google.com/p/python-gsw/ & http://pypi.python.org/pypi/gsw/3.0.1
# PRACSAL = gsw.SP_from_C((CONDWAT_L1 * 10), TEMPWAT_L1, PRESWAT_L1)
owner = 'gsw'
sal_func = 'SP_from_C'
sal_arglist = ['C', 't', 'p']
sal_pmap = {
'C':
NumexprFunction('CONDWAT_L1*10',
'C*10', ['C'],
param_map={'C': 'CONDWAT_L1'}),
't':
'TEMPWAT_L1',
'p':
'PRESWAT_L1'
}
sal_kwargmap = None
expr = PythonFunction('PRACSAL', owner, sal_func, sal_arglist,
sal_kwargmap, sal_pmap)
sal_ctxt = ParameterContext('PRACSAL',
param_type=ParameterFunctionType(expr),
variability=VariabilityEnum.TEMPORAL)
sal_ctxt.uom = 'g kg-1'
sal_ctxt_id = self.dataset_management.create_parameter_context(
name=sal_ctxt.name,
parameter_context=sal_ctxt.dump(),
parameter_type='pfunc',
unit_of_measure=sal_ctxt.uom)
# absolute_salinity = gsw.SA_from_SP(PRACSAL, PRESWAT_L1, longitude, latitude)
# conservative_temperature = gsw.CT_from_t(absolute_salinity, TEMPWAT_L1, PRESWAT_L1)
# DENSITY = gsw.rho(absolute_salinity, conservative_temperature, PRESWAT_L1)
owner = 'gsw'
abs_sal_expr = PythonFunction('abs_sal', owner, 'SA_from_SP',
['PRACSAL', 'PRESWAT_L1', 'LON', 'LAT'])
cons_temp_expr = PythonFunction(
'cons_temp', owner, 'CT_from_t',
[abs_sal_expr, 'TEMPWAT_L1', 'PRESWAT_L1'])
dens_expr = PythonFunction(
'DENSITY', owner, 'rho',
[abs_sal_expr, cons_temp_expr, 'PRESWAT_L1'])
dens_ctxt = ParameterContext(
'DENSITY',
param_type=ParameterFunctionType(dens_expr),
variability=VariabilityEnum.TEMPORAL)
dens_ctxt.uom = 'kg m-3'
dens_ctxt_id = self.dataset_management.create_parameter_context(
name=dens_ctxt.name,
parameter_context=dens_ctxt.dump(),
parameter_type='pfunc',
unit_of_measure=dens_ctxt.uom)
ids = [
t_ctxt_id, lat_ctxt_id, lon_ctxt_id, temp_ctxt_id, cond_ctxt_id,
press_ctxt_id, tempL1_ctxt_id, condL1_ctxt_id, presL1_ctxt_id,
sal_ctxt_id, dens_ctxt_id
]
contexts = [
t_ctxt, lat_ctxt, lon_ctxt, temp_ctxt, cond_ctxt, press_ctxt,
tempL1_ctxt, condL1_ctxt, presL1_ctxt, sal_ctxt, dens_ctxt
]
context_ids = [
ids[i] for i, ctxt in enumerate(contexts)
if ctxt.name in filter_values
]
pdict_name = '_'.join(
[ctxt.name for ctxt in contexts if ctxt.name in filter_values])
try:
self.pdicts[pdict_name]
return self.pdicts[pdict_name]
except KeyError:
pdict_id = self.dataset_management.create_parameter_dictionary(
pdict_name,
parameter_context_ids=context_ids,
temporal_context='time')
self.pdicts[pdict_name] = pdict_id
return pdict_id
class TestObservatoryManagementServiceIntegration(IonIntegrationTestCase):
def setUp(self):
# Start container
#print 'instantiating container'
self._start_container()
#container = Container()
#print 'starting container'
#container.start()
#print 'started container'
self.container.start_rel_from_url('res/deploy/r2deploy.yml')
self.RR = ResourceRegistryServiceClient(node=self.container.node)
self.RR2 = EnhancedResourceRegistryClient(self.RR)
self.OMS = ObservatoryManagementServiceClient(node=self.container.node)
self.org_management_service = OrgManagementServiceClient(
node=self.container.node)
self.IMS = InstrumentManagementServiceClient(node=self.container.node)
self.dpclient = DataProductManagementServiceClient(
node=self.container.node)
self.pubsubcli = PubsubManagementServiceClient(
node=self.container.node)
self.damsclient = DataAcquisitionManagementServiceClient(
node=self.container.node)
self.dataset_management = DatasetManagementServiceClient()
#print 'TestObservatoryManagementServiceIntegration: started services'
self.event_publisher = EventPublisher()
# @unittest.skip('this exists only for debugging the launch process')
# def test_just_the_setup(self):
# return
def destroy(self, resource_ids):
self.OMS.force_delete_observatory(resource_ids.observatory_id)
self.OMS.force_delete_subsite(resource_ids.subsite_id)
self.OMS.force_delete_subsite(resource_ids.subsite2_id)
self.OMS.force_delete_subsite(resource_ids.subsiteb_id)
self.OMS.force_delete_subsite(resource_ids.subsitez_id)
self.OMS.force_delete_platform_site(resource_ids.platform_site_id)
self.OMS.force_delete_platform_site(resource_ids.platform_siteb_id)
self.OMS.force_delete_platform_site(resource_ids.platform_siteb2_id)
self.OMS.force_delete_platform_site(resource_ids.platform_site3_id)
self.OMS.force_delete_instrument_site(resource_ids.instrument_site_id)
self.OMS.force_delete_instrument_site(resource_ids.instrument_site2_id)
self.OMS.force_delete_instrument_site(
resource_ids.instrument_siteb3_id)
self.OMS.force_delete_instrument_site(resource_ids.instrument_site4_id)
#@unittest.skip('targeting')
def test_observatory_management(self):
resources = self._make_associations()
self._do_test_find_related_sites(resources)
self._do_test_get_sites_devices_status(resources)
self._do_test_find_site_data_products(resources)
self._do_test_find_related_frames_of_reference(resources)
self._do_test_create_geospatial_point_center(resources)
self._do_test_find_observatory_org(resources)
self.destroy(resources)
def _do_test_find_related_sites(self, resources):
site_resources, site_children, _, _ = self.OMS.find_related_sites(
resources.org_id)
#import sys, pprint
#print >> sys.stderr, pprint.pformat(site_resources)
#print >> sys.stderr, pprint.pformat(site_children)
#self.assertIn(resources.org_id, site_resources)
self.assertIn(resources.observatory_id, site_resources)
self.assertIn(resources.subsite_id, site_resources)
self.assertIn(resources.subsite_id, site_resources)
self.assertIn(resources.subsite2_id, site_resources)
self.assertIn(resources.platform_site_id, site_resources)
self.assertIn(resources.instrument_site_id, site_resources)
self.assertEquals(len(site_resources), 13)
self.assertEquals(site_resources[resources.observatory_id].type_,
RT.Observatory)
self.assertIn(resources.org_id, site_children)
self.assertIn(resources.observatory_id, site_children)
self.assertIn(resources.subsite_id, site_children)
self.assertIn(resources.subsite_id, site_children)
self.assertIn(resources.subsite2_id, site_children)
self.assertIn(resources.platform_site_id, site_children)
self.assertNotIn(resources.instrument_site_id, site_children)
self.assertEquals(len(site_children), 9)
self.assertIsInstance(site_children[resources.subsite_id], list)
self.assertEquals(len(site_children[resources.subsite_id]), 2)
def _do_test_get_sites_devices_status(self, resources):
#bin/nosetests -s -v --nologcapture ion/services/sa/observatory/test/test_observatory_management_service_integration.py:TestObservatoryManagementServiceIntegration.test_observatory_management
full_result_dict = self.OMS.get_sites_devices_status(
parent_resource_ids=[resources.org_id], include_sites=True)
result_dict = full_result_dict[resources.org_id]
site_resources = result_dict.get("site_resources", None)
site_children = result_dict.get("site_children", None)
self.assertEquals(len(site_resources), 14)
self.assertEquals(len(site_children), 9)
full_result_dict = self.OMS.get_sites_devices_status(
parent_resource_ids=[resources.org_id],
include_sites=True,
include_devices=True,
include_status=True)
result_dict = full_result_dict[resources.org_id]
log.debug("RESULT DICT: %s", result_dict.keys())
site_resources = result_dict.get("site_resources", None)
site_children = result_dict.get("site_children", None)
site_status = result_dict.get("site_status", None)
self.assertEquals(len(site_resources), 14)
self.assertEquals(len(site_children), 9)
full_result_dict = self.OMS.get_sites_devices_status(
parent_resource_ids=[resources.observatory_id],
include_sites=True,
include_devices=True,
include_status=True)
result_dict = full_result_dict[resources.observatory_id]
site_resources = result_dict.get("site_resources")
site_children = result_dict.get("site_children")
site_status = result_dict.get("site_status")
self.assertEquals(len(site_resources), 13)
self.assertEquals(len(site_children), 8)
def _do_test_find_site_data_products(self, resources):
res_dict = self.OMS.find_site_data_products(resources.org_id)
#import sys, pprint
#print >> sys.stderr, pprint.pformat(res_dict)
self.assertIsNone(res_dict['data_product_resources'])
self.assertIn(resources.platform_device_id,
res_dict['device_data_products'])
self.assertIn(resources.instrument_device_id,
res_dict['device_data_products'])
#@unittest.skip('targeting')
def _do_test_find_related_frames_of_reference(self, stuff):
# finding subordinates gives a dict of obj lists, convert objs to ids
def idify(adict):
ids = {}
for k, v in adict.iteritems():
ids[k] = []
for obj in v:
ids[k].append(obj._id)
return ids
# a short version of the function we're testing, with id-ify
def short(resource_id, output_types):
ret = self.OMS.find_related_frames_of_reference(
resource_id, output_types)
return idify(ret)
#set up associations first
stuff = self._make_associations()
#basic traversal of tree from instrument to platform
ids = short(stuff.instrument_site_id, [RT.PlatformSite])
self.assertIn(RT.PlatformSite, ids)
self.assertIn(stuff.platform_site_id, ids[RT.PlatformSite])
self.assertIn(stuff.platform_siteb_id, ids[RT.PlatformSite])
self.assertNotIn(stuff.platform_siteb2_id, ids[RT.PlatformSite])
#since this is the first search, just make sure the input inst_id got stripped
if RT.InstrumentSite in ids:
self.assertNotIn(stuff.instrument_site_id, ids[RT.InstrumentSite])
#basic traversal of tree from platform to instrument
ids = short(stuff.platform_siteb_id, [RT.InstrumentSite])
self.assertIn(RT.InstrumentSite, ids)
self.assertIn(stuff.instrument_site_id, ids[RT.InstrumentSite])
self.assertNotIn(stuff.instrument_site2_id, ids[RT.InstrumentSite])
#full traversal of tree from observatory down to instrument
ids = short(stuff.observatory_id, [RT.InstrumentSite])
self.assertIn(RT.InstrumentSite, ids)
self.assertIn(stuff.instrument_site_id, ids[RT.InstrumentSite])
#full traversal of tree from instrument to observatory
ids = short(stuff.instrument_site_id, [RT.Observatory])
self.assertIn(RT.Observatory, ids)
self.assertIn(stuff.observatory_id, ids[RT.Observatory])
#partial traversal, only down to platform
ids = short(stuff.observatory_id, [RT.Subsite, RT.PlatformSite])
self.assertIn(RT.PlatformSite, ids)
self.assertIn(RT.Subsite, ids)
self.assertIn(stuff.platform_site_id, ids[RT.PlatformSite])
self.assertIn(stuff.platform_siteb_id, ids[RT.PlatformSite])
self.assertIn(stuff.platform_siteb2_id, ids[RT.PlatformSite])
self.assertIn(stuff.platform_site3_id, ids[RT.PlatformSite])
self.assertIn(stuff.subsite_id, ids[RT.Subsite])
self.assertIn(stuff.subsite2_id, ids[RT.Subsite])
self.assertIn(stuff.subsitez_id, ids[RT.Subsite])
self.assertIn(stuff.subsiteb_id, ids[RT.Subsite])
self.assertNotIn(RT.InstrumentSite, ids)
#partial traversal, only down to platform
ids = short(stuff.instrument_site_id, [RT.Subsite, RT.PlatformSite])
self.assertIn(RT.PlatformSite, ids)
self.assertIn(RT.Subsite, ids)
self.assertIn(stuff.platform_siteb_id, ids[RT.PlatformSite])
self.assertIn(stuff.platform_site_id, ids[RT.PlatformSite])
self.assertIn(stuff.subsite_id, ids[RT.Subsite])
self.assertIn(stuff.subsiteb_id, ids[RT.Subsite])
self.assertNotIn(stuff.subsite2_id, ids[RT.Subsite])
self.assertNotIn(stuff.subsitez_id, ids[RT.Subsite])
self.assertNotIn(stuff.platform_siteb2_id, ids[RT.PlatformSite])
self.assertNotIn(RT.Observatory, ids)
self.destroy(stuff)
def _make_associations(self):
"""
create one of each resource and association used by OMS
to guard against problems in ion-definitions
"""
#raise unittest.SkipTest("https://jira.oceanobservatories.org/tasks/browse/CISWCORE-41")
"""
the tree we're creating (observatory, sites, platforms, instruments)
rows are lettered, colums numbered.
- first row is implied a
- first column is implied 1
- site Z, just because
O--Sz
|
S--S2--P3--I4
|
Sb-Pb2-Ib3
|
P--I2 <- PlatformDevice, InstrumentDevice2
|
Pb <- PlatformDevice b
|
I <- InstrumentDevice
"""
org_id = self.OMS.create_marine_facility(any_old(RT.Org))
def create_under_org(resource_type, extra_fields=None):
obj = any_old(resource_type, extra_fields)
if RT.InstrumentDevice == resource_type:
resource_id = self.IMS.create_instrument_device(obj)
else:
resource_id, _ = self.RR.create(obj)
self.OMS.assign_resource_to_observatory_org(
resource_id=resource_id, org_id=org_id)
return resource_id
#stuff we control
observatory_id = create_under_org(RT.Observatory)
subsite_id = create_under_org(RT.Subsite)
subsite2_id = create_under_org(RT.Subsite)
subsiteb_id = create_under_org(RT.Subsite)
subsitez_id = create_under_org(RT.Subsite)
platform_site_id = create_under_org(RT.PlatformSite)
platform_siteb_id = create_under_org(RT.PlatformSite)
platform_siteb2_id = create_under_org(RT.PlatformSite)
platform_site3_id = create_under_org(RT.PlatformSite)
instrument_site_id = create_under_org(RT.InstrumentSite)
instrument_site2_id = create_under_org(RT.InstrumentSite)
instrument_siteb3_id = create_under_org(RT.InstrumentSite)
instrument_site4_id = create_under_org(RT.InstrumentSite)
#stuff we associate to
instrument_device_id = create_under_org(RT.InstrumentDevice)
instrument_device2_id = create_under_org(RT.InstrumentDevice)
platform_device_id = create_under_org(RT.PlatformDevice)
platform_deviceb_id = create_under_org(RT.PlatformDevice)
instrument_model_id, _ = self.RR.create(any_old(RT.InstrumentModel))
platform_model_id, _ = self.RR.create(any_old(RT.PlatformModel))
deployment_id, _ = self.RR.create(any_old(RT.Deployment))
# marine tracking resources
asset_id = create_under_org(RT.Asset)
asset_type_id = create_under_org(RT.AssetType)
event_duration_id = create_under_org(RT.EventDuration)
event_duration_type_id = create_under_org(RT.EventDurationType)
#observatory
self.RR.create_association(observatory_id, PRED.hasSite, subsite_id)
self.RR.create_association(observatory_id, PRED.hasSite, subsitez_id)
#site
self.RR.create_association(subsite_id, PRED.hasSite, subsite2_id)
self.RR.create_association(subsite_id, PRED.hasSite, subsiteb_id)
self.RR.create_association(subsite2_id, PRED.hasSite,
platform_site3_id)
self.RR.create_association(subsiteb_id, PRED.hasSite,
platform_siteb2_id)
self.RR.create_association(subsiteb_id, PRED.hasSite, platform_site_id)
#platform_site(s)
self.RR.create_association(platform_site3_id, PRED.hasSite,
instrument_site4_id)
self.RR.create_association(platform_siteb2_id, PRED.hasSite,
instrument_siteb3_id)
self.RR.create_association(platform_site_id, PRED.hasSite,
instrument_site2_id)
self.RR.create_association(platform_site_id, PRED.hasSite,
platform_siteb_id)
self.RR.create_association(platform_siteb_id, PRED.hasSite,
instrument_site_id)
self.RR.create_association(platform_siteb_id, PRED.hasDevice,
platform_deviceb_id)
#test network parent link
self.OMS.assign_device_to_network_parent(platform_device_id,
platform_deviceb_id)
self.RR.create_association(platform_site_id, PRED.hasModel,
platform_model_id)
self.RR.create_association(platform_site_id, PRED.hasDevice,
platform_device_id)
self.RR.create_association(platform_site_id, PRED.hasDeployment,
deployment_id)
#instrument_site(s)
self.RR.create_association(instrument_site_id, PRED.hasModel,
instrument_model_id)
self.RR.create_association(instrument_site_id, PRED.hasDevice,
instrument_device_id)
self.RR.create_association(instrument_site_id, PRED.hasDeployment,
deployment_id)
self.RR.create_association(instrument_site2_id, PRED.hasDevice,
instrument_device2_id)
#platform_device
self.RR.create_association(platform_device_id, PRED.hasModel,
platform_model_id)
#instrument_device
self.RR.create_association(instrument_device_id, PRED.hasModel,
instrument_model_id)
self.RR.create_association(instrument_device2_id, PRED.hasModel,
instrument_model_id)
ret = DotDict()
ret.org_id = org_id
ret.observatory_id = observatory_id
ret.subsite_id = subsite_id
ret.subsite2_id = subsite2_id
ret.subsiteb_id = subsiteb_id
ret.subsitez_id = subsitez_id
ret.platform_site_id = platform_site_id
ret.platform_siteb_id = platform_siteb_id
ret.platform_siteb2_id = platform_siteb2_id
ret.platform_site3_id = platform_site3_id
ret.instrument_site_id = instrument_site_id
ret.instrument_site2_id = instrument_site2_id
ret.instrument_siteb3_id = instrument_siteb3_id
ret.instrument_site4_id = instrument_site4_id
ret.instrument_device_id = instrument_device_id
ret.instrument_device2_id = instrument_device2_id
ret.platform_device_id = platform_device_id
ret.platform_deviceb_id = platform_deviceb_id
ret.instrument_model_id = instrument_model_id
ret.platform_model_id = platform_model_id
ret.deployment_id = deployment_id
ret.asset_id = asset_id
ret.asset_type_id = asset_type_id
ret.event_duration_id = event_duration_id
ret.event_duration_type_id = event_duration_type_id
return ret
#@unittest.skip("targeting")
def test_create_observatory(self):
observatory_obj = IonObject(RT.Observatory,
name='TestFacility',
description='some new mf')
observatory_id = self.OMS.create_observatory(observatory_obj)
self.OMS.force_delete_observatory(observatory_id)
#@unittest.skip("targeting")
def _do_test_create_geospatial_point_center(self, resources):
platformsite_obj = IonObject(RT.PlatformSite,
name='TestPlatformSite',
description='some new TestPlatformSite')
geo_index_obj = IonObject(OT.GeospatialBounds)
geo_index_obj.geospatial_latitude_limit_north = 20.0
geo_index_obj.geospatial_latitude_limit_south = 10.0
geo_index_obj.geospatial_longitude_limit_east = 15.0
geo_index_obj.geospatial_longitude_limit_west = 20.0
platformsite_obj.constraint_list = [geo_index_obj]
platformsite_id = self.OMS.create_platform_site(platformsite_obj)
# now get the dp back to see if it was updated
platformsite_obj = self.OMS.read_platform_site(platformsite_id)
self.assertEquals('some new TestPlatformSite',
platformsite_obj.description)
self.assertAlmostEqual(15.0,
platformsite_obj.geospatial_point_center.lat,
places=1)
#now adjust a few params
platformsite_obj.description = 'some old TestPlatformSite'
geo_index_obj = IonObject(OT.GeospatialBounds)
geo_index_obj.geospatial_latitude_limit_north = 30.0
geo_index_obj.geospatial_latitude_limit_south = 20.0
platformsite_obj.constraint_list = [geo_index_obj]
update_result = self.OMS.update_platform_site(platformsite_obj)
# now get the dp back to see if it was updated
platformsite_obj = self.OMS.read_platform_site(platformsite_id)
self.assertEquals('some old TestPlatformSite',
platformsite_obj.description)
self.assertAlmostEqual(25.0,
platformsite_obj.geospatial_point_center.lat,
places=1)
self.OMS.force_delete_platform_site(platformsite_id)
#@unittest.skip("targeting")
def _do_test_find_observatory_org(self, resources):
log.debug("Make TestOrg")
org_obj = IonObject(RT.Org,
name='TestOrg',
description='some new mf org')
org_id = self.OMS.create_marine_facility(org_obj)
log.debug("Make Observatory")
observatory_obj = IonObject(RT.Observatory,
name='TestObservatory',
description='some new obs')
observatory_id = self.OMS.create_observatory(observatory_obj)
log.debug("assign observatory to org")
self.OMS.assign_resource_to_observatory_org(observatory_id, org_id)
log.debug("verify assigment")
org_objs = self.OMS.find_org_by_observatory(observatory_id)
self.assertEqual(1, len(org_objs))
self.assertEqual(org_id, org_objs[0]._id)
log.debug("org_id=<" + org_id + ">")
log.debug("create a subsite with parent Observatory")
subsite_obj = IonObject(RT.Subsite,
name='TestSubsite',
description='sample subsite')
subsite_id = self.OMS.create_subsite(subsite_obj, observatory_id)
self.assertIsNotNone(subsite_id, "Subsite not created.")
log.debug("verify that Subsite is linked to Observatory")
mf_subsite_assoc = self.RR.get_association(observatory_id,
PRED.hasSite, subsite_id)
self.assertIsNotNone(mf_subsite_assoc,
"Subsite not connected to Observatory.")
log.debug("add the Subsite as a resource of this Observatory")
self.OMS.assign_resource_to_observatory_org(resource_id=subsite_id,
org_id=org_id)
log.debug("verify that Subsite is linked to Org")
org_subsite_assoc = self.RR.get_association(org_id, PRED.hasResource,
subsite_id)
self.assertIsNotNone(org_subsite_assoc,
"Subsite not connected as resource to Org.")
log.debug("create a logical platform with parent Subsite")
platform_site_obj = IonObject(RT.PlatformSite,
name='TestPlatformSite',
description='sample logical platform')
platform_site_id = self.OMS.create_platform_site(
platform_site_obj, subsite_id)
self.assertIsNotNone(platform_site_id, "PlatformSite not created.")
log.debug("verify that PlatformSite is linked to Site")
site_lp_assoc = self.RR.get_association(subsite_id, PRED.hasSite,
platform_site_id)
self.assertIsNotNone(site_lp_assoc,
"PlatformSite not connected to Site.")
log.debug("add the PlatformSite as a resource of this Observatory")
self.OMS.assign_resource_to_observatory_org(
resource_id=platform_site_id, org_id=org_id)
log.debug("verify that PlatformSite is linked to Org")
org_lp_assoc = self.RR.get_association(org_id, PRED.hasResource,
platform_site_id)
self.assertIsNotNone(org_lp_assoc,
"PlatformSite not connected as resource to Org.")
log.debug("create a logical instrument with parent logical platform")
instrument_site_obj = IonObject(
RT.InstrumentSite,
name='TestInstrumentSite',
description='sample logical instrument')
instrument_site_id = self.OMS.create_instrument_site(
instrument_site_obj, platform_site_id)
self.assertIsNotNone(instrument_site_id, "InstrumentSite not created.")
log.debug("verify that InstrumentSite is linked to PlatformSite")
li_lp_assoc = self.RR.get_association(platform_site_id, PRED.hasSite,
instrument_site_id)
self.assertIsNotNone(li_lp_assoc,
"InstrumentSite not connected to PlatformSite.")
log.debug("add the InstrumentSite as a resource of this Observatory")
self.OMS.assign_resource_to_observatory_org(
resource_id=instrument_site_id, org_id=org_id)
log.debug("verify that InstrumentSite is linked to Org")
org_li_assoc = self.RR.get_association(org_id, PRED.hasResource,
instrument_site_id)
self.assertIsNotNone(
org_li_assoc, "InstrumentSite not connected as resource to Org.")
log.debug(
"remove the InstrumentSite as a resource of this Observatory")
self.OMS.unassign_resource_from_observatory_org(
instrument_site_id, org_id)
log.debug("verify that InstrumentSite is linked to Org")
assocs, _ = self.RR.find_objects(org_id,
PRED.hasResource,
RT.InstrumentSite,
id_only=True)
self.assertEqual(0, len(assocs))
log.debug(
"remove the InstrumentSite, association should drop automatically")
self.OMS.delete_instrument_site(instrument_site_id)
assocs, _ = self.RR.find_objects(platform_site_id,
PRED.hasSite,
RT.InstrumentSite,
id_only=True)
self.assertEqual(0, len(assocs))
log.debug("remove the PlatformSite as a resource of this Observatory")
self.OMS.unassign_resource_from_observatory_org(
platform_site_id, org_id)
log.debug("verify that PlatformSite is linked to Org")
assocs, _ = self.RR.find_objects(org_id,
PRED.hasResource,
RT.PlatformSite,
id_only=True)
self.assertEqual(0, len(assocs))
log.debug("remove the Site as a resource of this Observatory")
self.OMS.unassign_resource_from_observatory_org(subsite_id, org_id)
log.debug("verify that Site is linked to Org")
assocs, _ = self.RR.find_objects(org_id,
PRED.hasResource,
RT.Subsite,
id_only=True)
self.assertEqual(0, len(assocs))
self.RR.delete(org_id)
self.OMS.force_delete_observatory(observatory_id)
self.OMS.force_delete_subsite(subsite_id)
self.OMS.force_delete_platform_site(platform_site_id)
self.OMS.force_delete_instrument_site(instrument_site_id)
@attr('EXT')
@unittest.skipIf(os.getenv(
'CEI_LAUNCH_TEST', False
), 'Skip test while in CEI LAUNCH mode as it depends on modifying CFG on service side'
)
def test_observatory_extensions(self):
self.patch_cfg(CFG["container"],
{"extended_resources": {
"strip_results": False
}})
obs_id = self.RR2.create(any_old(RT.Observatory))
pss_id = self.RR2.create(
any_old(RT.PlatformSite, dict(alt_resource_type="StationSite")))
pas_id = self.RR2.create(
any_old(RT.PlatformSite,
dict(alt_resource_type="PlatformAssemblySite")))
pcs_id = self.RR2.create(
any_old(RT.PlatformSite,
dict(alt_resource_type="PlatformComponentSite")))
ins_id = self.RR2.create(any_old(RT.InstrumentSite))
obs_obj = self.RR2.read(obs_id)
pss_obj = self.RR2.read(pss_id)
pas_obj = self.RR2.read(pas_id)
pcs_obj = self.RR2.read(pcs_id)
ins_obj = self.RR2.read(ins_id)
self.RR2.create_association(obs_id, PRED.hasSite, pss_id)
self.RR2.create_association(pss_id, PRED.hasSite, pas_id)
self.RR2.create_association(pas_id, PRED.hasSite, pcs_id)
self.RR2.create_association(pcs_id, PRED.hasSite, ins_id)
extended_obs = self.OMS.get_observatory_site_extension(obs_id,
user_id=12345)
self.assertEqual([pss_obj], extended_obs.platform_station_sites)
self.assertEqual([pas_obj], extended_obs.platform_assembly_sites)
self.assertEqual([pcs_obj], extended_obs.platform_component_sites)
self.assertEqual([ins_obj], extended_obs.instrument_sites)
extended_pss = self.OMS.get_observatory_site_extension(obs_id,
user_id=12345)
self.assertEqual([pas_obj], extended_pss.platform_assembly_sites)
self.assertEqual([pcs_obj], extended_pss.platform_component_sites)
self.assertEqual([ins_obj], extended_pss.instrument_sites)
extended_pas = self.OMS.get_observatory_site_extension(pas_id,
user_id=12345)
self.assertEqual([pcs_obj], extended_pas.platform_component_sites)
self.assertEqual([ins_obj], extended_pas.instrument_sites)
extended_pcs = self.OMS.get_platform_component_site_extension(
pcs_id, user_id=12345)
self.assertEqual([ins_obj], extended_pcs.instrument_sites)
#@unittest.skip("in development...")
@attr('EXT')
@attr('EXT1')
@unittest.skipIf(os.getenv(
'CEI_LAUNCH_TEST', False
), 'Skip test while in CEI LAUNCH mode as it depends on modifying CFG on service side'
)
def test_observatory_org_extended(self):
self.patch_cfg(CFG["container"],
{"extended_resources": {
"strip_results": False
}})
stuff = self._make_associations()
parsed_pdict_id = self.dataset_management.read_parameter_dictionary_by_name(
'ctd_parsed_param_dict', id_only=True)
parsed_stream_def_id = self.pubsubcli.create_stream_definition(
name='parsed', parameter_dictionary_id=parsed_pdict_id)
dp_obj = IonObject(RT.DataProduct,
name='the parsed data',
description='ctd stream test')
data_product_id1 = self.dpclient.create_data_product(
data_product=dp_obj, stream_definition_id=parsed_stream_def_id)
self.damsclient.assign_data_product(
input_resource_id=stuff.instrument_device_id,
data_product_id=data_product_id1)
#Create a user to be used as regular member
member_actor_obj = IonObject(RT.ActorIdentity, name='org member actor')
member_actor_id, _ = self.RR.create(member_actor_obj)
assert (member_actor_id)
member_actor_header = get_actor_header(member_actor_id)
member_user_obj = IonObject(RT.UserInfo, name='org member user')
member_user_id, _ = self.RR.create(member_user_obj)
assert (member_user_id)
self.RR.create_association(subject=member_actor_id,
predicate=PRED.hasInfo,
object=member_user_id)
#Build the Service Agreement Proposal to enroll a user actor
sap = IonObject(OT.EnrollmentProposal,
consumer=member_actor_id,
provider=stuff.org_id)
sap_response = self.org_management_service.negotiate(
sap, headers=member_actor_header)
#enroll the member without using negotiation
self.org_management_service.enroll_member(org_id=stuff.org_id,
actor_id=member_actor_id)
#--------------------------------------------------------------------------------
# Get the extended Site (platformSite)
#--------------------------------------------------------------------------------
try:
extended_site = self.OMS.get_site_extension(stuff.platform_site_id)
except:
log.error('failed to get extended site', exc_info=True)
raise
log.debug("extended_site: %r ", extended_site)
self.assertEquals(stuff.subsiteb_id, extended_site.parent_site._id)
self.assertEqual(2, len(extended_site.sites))
self.assertEqual(2, len(extended_site.platform_devices))
self.assertEqual(2, len(extended_site.platform_models))
self.assertIn(stuff.platform_device_id,
[o._id for o in extended_site.platform_devices])
self.assertIn(
stuff.platform_model_id,
[o._id for o in extended_site.platform_models if o is not None])
log.debug(
"verify that PlatformDeviceb is linked to PlatformDevice with hasNetworkParent link"
)
associations = self.RR.find_associations(
subject=stuff.platform_deviceb_id,
predicate=PRED.hasNetworkParent,
object=stuff.platform_device_id,
id_only=True)
self.assertIsNotNone(
associations,
"PlatformDevice child not connected to PlatformDevice parent.")
#--------------------------------------------------------------------------------
# Get the extended Org
#--------------------------------------------------------------------------------
#test the extended resource
extended_org = self.OMS.get_marine_facility_extension(stuff.org_id)
log.debug("test_observatory_org_extended: extended_org: %s ",
str(extended_org))
#self.assertEqual(2, len(extended_org.instruments_deployed) )
#self.assertEqual(1, len(extended_org.platforms_not_deployed) )
self.assertEqual(2, extended_org.number_of_platforms)
self.assertEqual(2, len(extended_org.platform_models))
self.assertEqual(2, extended_org.number_of_instruments)
self.assertEqual(2, len(extended_org.instrument_models))
self.assertEqual(1, len(extended_org.members))
self.assertNotEqual(extended_org.members[0]._id, member_actor_id)
self.assertEqual(extended_org.members[0]._id, member_user_id)
self.assertEqual(1, len(extended_org.open_requests))
self.assertTrue(len(extended_site.deployments) > 0)
self.assertEqual(len(extended_site.deployments),
len(extended_site.deployment_info))
self.assertEqual(1, extended_org.number_of_assets)
self.assertEqual(1, extended_org.number_of_asset_types)
self.assertEqual(1, extended_org.number_of_event_durations)
self.assertEqual(1, extended_org.number_of_event_duration_types)
#test the extended resource of the ION org
ion_org_id = self.org_management_service.find_org()
extended_org = self.OMS.get_marine_facility_extension(ion_org_id._id,
user_id=12345)
log.debug("test_observatory_org_extended: extended_ION_org: %s ",
str(extended_org))
self.assertEqual(1, len(extended_org.members))
self.assertEqual(0, extended_org.number_of_platforms)
#self.assertEqual(1, len(extended_org.sites))
#--------------------------------------------------------------------------------
# Get the extended Site
#--------------------------------------------------------------------------------
#create device state events to use for op /non-op filtering in extended
t = get_ion_ts()
self.event_publisher.publish_event(
ts_created=t,
event_type='ResourceAgentStateEvent',
origin=stuff.instrument_device_id,
state=ResourceAgentState.STREAMING)
self.event_publisher.publish_event(
ts_created=t,
event_type='ResourceAgentStateEvent',
origin=stuff.instrument_device2_id,
state=ResourceAgentState.INACTIVE)
extended_site = self.OMS.get_site_extension(stuff.instrument_site2_id)
log.debug("test_observatory_org_extended: extended_site: %s ",
str(extended_site))
self.dpclient.delete_data_product(data_product_id1)
class TestObservatoryManagementFullIntegration(IonIntegrationTestCase):
def setUp(self):
self._start_container()
self.container.start_rel_from_url('res/deploy/r2deploy.yml')
self.RR = ResourceRegistryServiceClient()
self.RR2 = EnhancedResourceRegistryClient(self.RR)
self.OMS = ObservatoryManagementServiceClient()
self.org_management_service = OrgManagementServiceClient()
self.IMS = InstrumentManagementServiceClient()
self.dpclient = DataProductManagementServiceClient()
self.pubsubcli = PubsubManagementServiceClient()
self.damsclient = DataAcquisitionManagementServiceClient()
self.dataset_management = DatasetManagementServiceClient()
self.data_retriever = DataRetrieverServiceClient()
self.data_product_management = DataProductManagementServiceClient()
self._load_stage = 0
self._resources = {}
def preload_ooi(self, stage=STAGE_LOAD_ASSETS):
# Preloads OOI up to a given stage
if self._load_stage >= stage:
return
if self._load_stage < STAGE_LOAD_ORGS:
log.info("--------------------------------------------------------------------------------------------------------")
log.info("Preloading stage: %s (OOIR2 Orgs, users, roles)", STAGE_LOAD_ORGS)
# load_OOIR2_scenario
self.container.spawn_process("Loader", "ion.processes.bootstrap.ion_loader", "IONLoader", config=dict(
op="load",
scenario="OOIR2",
path="master",
))
self._load_stage = STAGE_LOAD_ORGS
if self._load_stage < STAGE_LOAD_PARAMS:
log.info("--------------------------------------------------------------------------------------------------------")
log.info("Preloading stage: %s (BASE params, streamdefs)", STAGE_LOAD_PARAMS)
# load_parameter_scenarios
self.container.spawn_process("Loader", "ion.processes.bootstrap.ion_loader", "IONLoader", config=dict(
op="load",
scenario="BETA",
path="master",
categories="ParameterFunctions,ParameterDefs,ParameterDictionary,StreamDefinition",
clearcols="owner_id,org_ids",
assets="res/preload/r2_ioc/ooi_assets",
parseooi="True",
))
self._load_stage = STAGE_LOAD_PARAMS
if self._load_stage < STAGE_LOAD_AGENTS:
log.info("--------------------------------------------------------------------------------------------------------")
log.info("Preloading stage: %s (OOIR2_I agents, model links)", STAGE_LOAD_AGENTS)
# load_OOIR2_agents
self.container.spawn_process("Loader", "ion.processes.bootstrap.ion_loader", "IONLoader", config=dict(
op="load",
scenario="OOIR2_I",
path="master",
))
self._load_stage = STAGE_LOAD_AGENTS
if self._load_stage < STAGE_LOAD_ASSETS:
log.info("--------------------------------------------------------------------------------------------------------")
log.info("Preloading stage: %s (OOI assets linked to params, agents)", STAGE_LOAD_ASSETS)
# load_ooi_assets
self.container.spawn_process("Loader", "ion.processes.bootstrap.ion_loader", "IONLoader", config=dict(
op="load",
loadooi="True",
path="master",
assets="res/preload/r2_ioc/ooi_assets",
bulk="True",
debug="True",
ooiuntil="9/1/2013",
ooiparams="True",
#excludecategories: DataProduct,DataProductLink,Deployment,Workflow,WorkflowDefinition
))
self._load_stage = STAGE_LOAD_ASSETS
# 'DataProduct,DataProductLink,WorkflowDefinition,ExternalDataProvider,ExternalDatasetModel,ExternalDataset,ExternalDatasetAgent,ExternalDatasetAgentInstance',
@unittest.skip('Work in progress')
def test_observatory(self):
self._load_stage = 0
self._resources = {}
passing = True
self.assertTrue(True)
# LOAD STEP 1
self.preload_ooi(stage=STAGE_LOAD_ORGS)
passing &= self.orguserrole_assertions()
# LOAD STEP 2
self.preload_ooi(stage=STAGE_LOAD_PARAMS)
passing &= self.parameter_assertions()
# LOAD STEP 3
self.preload_ooi(stage=STAGE_LOAD_AGENTS)
passing &= self.agent_assertions()
# LOAD STEP 4
self.preload_ooi(stage=STAGE_LOAD_ASSETS)
# Check OOI preloaded resources to see if they match needs for this test and for correctness
passing &= self.sites_assertions()
passing &= self.device_assertions()
passing &= self.deployment_assertions()
# Extensive tests on select RSN nodes
passing &= self.rsn_node_checks()
# Extensive tests on select RSN instruments
passing &= self.check_rsn_instrument()
passing &= self.check_rsn_instrument_data_product()
# Extensive tests on a glider
#passing &= self.check_glider()
# Extensive tests on a CG assembly
#passing &= self.check_cg_assembly()
# Add a new instrument agent
# Add a new instrument agent instance
# Check DataProducts
# Check Provenance
IonIntegrationTestCase.assertTrue(self, passing)
# -------------------------------------------------------------------------
def orguserrole_assertions(self):
passing = True
passing &= self._check_marine_facility("MF_CGSN")
passing &= self._check_marine_facility("MF_RSN")
passing &= self._check_marine_facility("MF_EA")
return passing
def _check_marine_facility(self, preload_id):
passing = True
log.debug("Checking marine facility %s and associations", preload_id)
mf_obj = self.retrieve_ooi_asset(preload_id)
mf_id = mf_obj._id
self._resources[preload_id] = mf_id
passing &= self.assertEquals(mf_obj.lcstate, LCS.DEPLOYED)
res_list, _ = self.RR.find_objects(subject=mf_id, predicate=PRED.hasMembership, id_only=True)
passing &= self.assertTrue(len(res_list) >= 3)
res_list, _ = self.RR.find_objects(subject=mf_id, predicate=PRED.hasRole, id_only=False)
passing &= self.assertTrue(len(res_list) >= 5)
passing &= self._check_role_assignments(res_list, "ORG_MANAGER")
passing &= self._check_role_assignments(res_list, "OBSERVATORY_OPERATOR")
passing &= self._check_role_assignments(res_list, "INSTRUMENT_OPERATOR")
return passing
def _check_role_assignments(self, role_list, role_name):
passing = True
role_obj = self._find_resource_in_list(role_list, "governance_name", role_name)
if role_obj:
res_list = self.RR.find_subjects(predicate=PRED.hasRole, object=role_obj._id, id_only=True)
passing &= self.assertTrue(len(res_list) >= 1)
return passing
def parameter_assertions(self):
passing = True
pctx_list, _ = self.RR.find_resources_ext(restype=RT.ParameterContext)
passing &= self.assertTrue(len(pctx_list) >= 10)
pdict_list, _ = self.RR.find_resources_ext(restype=RT.ParameterDictionary)
passing &= self.assertTrue(len(pdict_list) >= 10)
sdef_list, _ = self.RR.find_resources_ext(restype=RT.StreamDefinition)
passing &= self.assertTrue(len(sdef_list) >= 10)
# Verify that a PDict has the appropriate QC parameters defined
pdicts, _ = self.RR.find_resources_ext(restype=RT.ParameterDictionary, alt_id_ns='PRE', alt_id='DICT110')
passing &= self.assertTrue(len(pdicts)==1)
if not pdicts:
return passing
pdict = pdicts[0]
# According to the latest SAF, density should NOT have trend
parameters, _ = self.RR.find_objects(pdict, PRED.hasParameterContext)
names = [i.name for i in parameters if i.name.startswith('density')]
passing &= self.assertTrue('density_trndtst_qc' not in names)
return passing
def agent_assertions(self):
passing = True
# TODO: More tests?
return passing
def sites_assertions(self):
passing = True
observatory_list, _ = self.RR.find_resources_ext(restype=RT.Observatory)
passing &= self.assertTrue(len(observatory_list) >= 40)
for obs in observatory_list:
passing &= self.assertEquals(obs.lcstate, LCS.DEPLOYED)
platform_site_list, _ = self.RR.find_resources(RT.PlatformSite, id_only=False)
log.debug('platform sites: %s', [ps.name for ps in platform_site_list])
passing &= self.assertTrue(len(platform_site_list) >= 30)
return passing
def device_assertions(self):
passing = True
platform_device_list, _ = self.RR.find_resources(RT.PlatformDevice, id_only=False)
passing &= self.assertTrue(len(platform_device_list) >= 30)
for pdev in platform_device_list:
log.debug('platform device: %s', pdev.name)
passing &= self.assertEquals(pdev.lcstate, LCS.PLANNED)
platform_agent_list, _ = self.RR.find_resources(RT.PlatformAgent, id_only=False)
passing &= self.assertTrue(len(platform_agent_list) >= 2)
for pagent in platform_agent_list:
log.debug('platform agent: %s', pagent.name)
passing &= self.assertEquals(pagent.lcstate, LCS.DEPLOYED)
instrument_agent_list, _ = self.RR.find_resources(RT.InstrumentAgent, id_only=False)
passing &= self.assertTrue(len(instrument_agent_list) >= 3)
for iagent in instrument_agent_list:
log.debug('instrument agent: %s', iagent.name)
passing &= self.assertEquals(iagent.lcstate, LCS.DEPLOYED)
model_list, _ = self.RR.find_objects(subject=iagent._id, predicate=PRED.hasModel, id_only=True)
passing &= self.assertTrue(len(model_list) >= 1, "IA %s" % iagent.name)
return passing
def deployment_assertions(self):
passing = True
deployment_list, _ = self.RR.find_resources(RT.Deployment, id_only=False)
passing &= self.assertTrue(len(deployment_list) >= 30)
for deploy in deployment_list:
log.debug('deployment: %s', deploy.name)
passing &= self.assertEquals(deploy.lcstate, LCS.DEPLOYED)
return passing
def rsn_node_checks(self):
"""
Current preload creates:
- PlatformDevice in PLANNED
- PlatformSite in DEPLOYED
- Deployment in DEPLOYED
- Deployment is NOT activated
"""
passing = True
dp_obj = self.retrieve_ooi_asset("CE04OSHY-PN01C_DEP")
passing &= self.assertEquals(dp_obj.lcstate, LCS.DEPLOYED)
passing &= self.assertEquals(dp_obj.availability, AS.AVAILABLE)
log.debug('test_observatory retrieve CE04OSHY-PN01C_DEP deployment: %s', dp_obj)
# Check existing RSN node CE04OSHY-LV01C Deployment (PLANNED lcstate)
CE04OSHY_LV01C_deployment = self.retrieve_ooi_asset('CE04OSHY-LV01C_DEP')
passing &= self.assertEquals(CE04OSHY_LV01C_deployment.lcstate, LCS.DEPLOYED)
passing &= self.assertEquals(CE04OSHY_LV01C_deployment.availability, AS.AVAILABLE)
#self.dump_deployment(CE04OSHY_LV01C_deployment._id)
log.debug('test_observatory retrieve RSN node CE04OSHY-LV01C Deployment: %s', CE04OSHY_LV01C_deployment)
CE04OSHY_LV01C_device = self.retrieve_ooi_asset('CE04OSHY-LV01C_PD')
# Set CE04OSHY-LV01C device to DEVELOPED state
passing &= self.transition_lcs_then_verify(resource_id=CE04OSHY_LV01C_device._id, new_lcs_state=LCE.DEVELOP, verify=LCS.DEVELOPED)
# Set CE04OSHY-LV01C device to INTEGRATED state
passing &= self.transition_lcs_then_verify(resource_id=CE04OSHY_LV01C_device._id, new_lcs_state=LCE.INTEGRATE, verify=LCS.INTEGRATED)
# Set CE04OSHY-LV01C device to DEPLOYED state
passing &= self.transition_lcs_then_verify(resource_id=CE04OSHY_LV01C_device._id, new_lcs_state=LCE.DEPLOY, verify=LCS.DEPLOYED)
# Set CE04OSHY-LV01C Deployment to DEPLOYED state
# NOTE: Deployments are created in DEPLOYED state, currently
#self.transition_lcs_then_verify(resource_id=CE04OSHY_LV01C_deployment._id, new_lcs_state=LCE.DEPLOY, verify='DEPLOYED')
# Activate Deployment for CE04OSHY-LV01C
self.OMS.activate_deployment(CE04OSHY_LV01C_deployment._id)
log.debug('--------- activate_deployment CE04OSHY_LV01C_deployment -------------- ')
self.dump_deployment(CE04OSHY_LV01C_deployment._id)
passing &= self.validate_deployment_activated(CE04OSHY_LV01C_deployment._id)
# (optional) Start CE04OSHY-LV01C platform agent with simulator
# NOTE: DataProduct is generated in DEPLOYED state
# # Set DataProduct for CE04OSHY-LV01C platform to DEPLOYED state
# output_data_product_ids, assns =self.RR.find_objects(subject=CE04OSHY_LV01C_device._id, predicate=PRED.hasOutputProduct, id_only=True)
# if output_data_product_ids:
# #self.assertEquals(len(child_devs), 3)
# for output_data_product_id in output_data_product_ids:
# log.debug('DataProduct for CE04OSHY-LV01C platform: %s', output_data_product_id)
# self.transition_lcs_then_verify(resource_id=output_data_product_id, new_lcs_state=LCE.DEPLOY, verify='DEPLOYED')
# Check events for CE04OSHY-LV01C platform
# Check existing CE04OSBP-LJ01C Deployment (PLANNED lcstate)
# dp_list, _ = self.RR.find_resources_ext(alt_id_ns="PRE", alt_id="CE04OSBP-LJ01C_DEP")
# self.assertEquals(len(dp_list), 1)
# CE04OSHY_LV01C_deployment = dp_list[0]
# self.assertEquals(CE04OSHY_LV01C_deployment.lcstate, 'PLANNED')
# log.debug('test_observatory retrieve RSN node CE04OSBP-LJ01C Deployment: %s', CE04OSHY_LV01C_deployment)
# Set CE04OSBP-LJ01C Deployment to DEPLOYED state
# Update description and other attributes for CE04OSBP-LJ01C device resource
# Create attachment (JPG image) for CE04OSBP-LJ01C device resource
# Activate Deployment for CE04OSBP-LJ01C
# (optional) Add/register CE04OSBP-LJ01C platform agent to parent agent
# (optional) Start CE04OSBP-LJ01C platform agent
return passing
def check_rsn_instrument(self):
"""
Check existing RSN instrument CE04OSBP-LJ01C-06-CTDBPO108 Deployment (PLANNED lcstate)
Current preload creates:
- InstrumentDevice in PLANNED
- InstrumentSite in DEPLOYED
- Deployment in DEPLOYED
- Deployment is activated
"""
passing = True
CE04OSBP_LJ01C_06_CTDBPO108_deploy = self.retrieve_ooi_asset('CE04OSBP-LJ01C-06-CTDBPO108_DEP')
self.dump_deployment(CE04OSBP_LJ01C_06_CTDBPO108_deploy._id)
#passing &= self.assertEquals(CE04OSBP_LJ01C_06_CTDBPO108_deploy.lcstate, 'PLANNED')
# Set CE04OSBP-LJ01C-06-CTDBPO108 device to DEVELOPED state
CE04OSBP_LJ01C_06_CTDBPO108_device = self.retrieve_ooi_asset('CE04OSBP-LJ01C-06-CTDBPO108_ID')
passing &= self.transition_lcs_then_verify(resource_id=CE04OSBP_LJ01C_06_CTDBPO108_device._id, new_lcs_state=LCE.DEVELOP, verify='DEVELOPED')
# Set CE04OSBP-LJ01C-06-CTDBPO108 device to INTEGRATED state
passing &= self.transition_lcs_then_verify(resource_id=CE04OSBP_LJ01C_06_CTDBPO108_device._id, new_lcs_state=LCE.INTEGRATE, verify='INTEGRATED')
# Set CE04OSBP-LJ01C-06-CTDBPO108 device to DEPLOYED state
passing &= self.transition_lcs_then_verify(resource_id=CE04OSBP_LJ01C_06_CTDBPO108_device._id, new_lcs_state=LCE.DEPLOY, verify='DEPLOYED')
# Set CE04OSBP-LJ01C-06-CTDBPO108 Deployment to DEPLOYED state
#self.transition_lcs_then_verify(resource_id=CE04OSBP_LJ01C_06_CTDBPO108_deploy._id, new_lcs_state=LCE.DEPLOY, verify='DEPLOYED')
# Activate Deployment for CE04OSBP-LJ01C-06-CTDBPO108 instrument
log.debug('--------- activate_deployment CE04OSBP-LJ01C-06-CTDBPO108 deployment -------------- ')
self.OMS.activate_deployment(CE04OSBP_LJ01C_06_CTDBPO108_deploy._id)
passing &= self.validate_deployment_activated(CE04OSBP_LJ01C_06_CTDBPO108_deploy._id)
# (optional) Add/register CE04OSBP-LJ01C-06-CTDBPO108 instrument agent to parent agent
# (optional) Start CE04OSBP-LJ01C-06-CTDBPO108 instrument agent with simulator
# Set all DataProducts for CE04OSBP-LJ01C-06-CTDBPO108 to DEPLOYED state
# (optional) Create a substitute Deployment for site CE04OSBP-LJ01C-06-CTDBPO108 with a comparable device
CE04OSBP_LJ01C_06_CTDBPO108_isite = self.retrieve_ooi_asset('CE04OSBP-LJ01C-06-CTDBPO108')
## create device here: retrieve CTD Mooring on Mooring Riser 001 - similiar?
GP03FLMB_RI001_10_CTDMOG999_ID_idevice = self.retrieve_ooi_asset('GP03FLMB-RI001-10-CTDMOG999_ID')
deploy_id_2 = self.create_basic_deployment(name='CE04OSBP-LJ01C-06-CTDBPO108_DEP2', description='substitute Deployment for site CE04OSBP-LJ01C-06-CTDBPO108 with a comparable device')
self.IMS.deploy_instrument_device(instrument_device_id=GP03FLMB_RI001_10_CTDMOG999_ID_idevice._id, deployment_id=deploy_id_2)
self.OMS.deploy_instrument_site(instrument_site_id=CE04OSBP_LJ01C_06_CTDBPO108_isite._id, deployment_id=deploy_id_2)
self.dump_deployment(deploy_id_2)
# (optional) Activate this second deployment - check first deployment is deactivated
self.OMS.deactivate_deployment(CE04OSBP_LJ01C_06_CTDBPO108_deploy._id)
passing &= self.validate_deployment_deactivated(CE04OSBP_LJ01C_06_CTDBPO108_deploy._id)
# log.debug('Activate deployment deploy_id_2')
# self.get_deployment_ids(deploy_id_2)
# self.dump_deployment(deploy_id_2, "deploy_id_2")
# self.OMS.activate_deployment(deploy_id_2)
# passing &= self.validate_deployment_deactivated(CE04OSBP_LJ01C_06_CTDBPO108_deploy._id)
#
# # (optional) Set first CE04OSBP-LJ01C-06-CTDBPO108 Deployment to INTEGRATED state
# passing &= self.transition_lcs_then_verify(resource_id=CE04OSBP_LJ01C_06_CTDBPO108_deploy._id, new_lcs_state=LCE.INTEGRATE, verify='INTEGRATED')
#
# # Set first CE04OSBP-LJ01C-06-CTDBPO108 device to INTEGRATED state
# passing &= self.transition_lcs_then_verify(resource_id=CE04OSBP_LJ01C_06_CTDBPO108_device._id, new_lcs_state=LCE.INTEGRATE, verify='INTEGRATED')
#
#
# # (optional) Create a third Deployment for site CE04OSBP-LJ01C-06-CTDBPO108 with a same device from first deployment
# deploy_id_3 = self.create_basic_deployment(name='CE04OSBP-LJ01C-06-CTDBPO108_DEP3', description='substitute Deployment for site CE04OSBP-LJ01C-06-CTDBPO108 with same device as first')
# self.IMS.deploy_instrument_device(instrument_device_id=GP03FLMB_RI001_10_CTDMOG999_ID_idevice._id, deployment_id=deploy_id_3)
# self.OMS.deploy_instrument_site(instrument_site_id=CE04OSBP_LJ01C_06_CTDBPO108_isite._id, deployment_id=deploy_id_3)
# self.dump_deployment(deploy_id_3)
#
#
# # Set first CE04OSBP-LJ01C-06-CTDBPO108 device to DEPLOYED state
# passing &= self.transition_lcs_then_verify(resource_id=CE04OSBP_LJ01C_06_CTDBPO108_device._id, new_lcs_state=LCE.DEPLOY, verify='DEPLOYED')
#
# # (optional) Activate this third deployment - check second deployment is deactivated
# log.debug('Activate deployment deploy_id_3')
# self.dump_deployment(deploy_id_3)
# self.OMS.activate_deployment(deploy_id_3)
# #todo: check second deployment is deactivated
return passing
def check_data_product_reference(self, reference_designator, output=[]):
passing = True
data_product_ids, _ = self.RR.find_resources_ext(alt_id_ns='PRE', alt_id='%s_DPI1' % reference_designator, id_only=True) # Assuming DPI1 is parsed
passing &= self.assertEquals(len(data_product_ids), 1)
if not data_product_ids:
return passing
# Let's go ahead and activate it
data_product_id = data_product_ids[0]
self.dpclient.activate_data_product_persistence(data_product_id)
self.addCleanup(self.dpclient.suspend_data_product_persistence, data_product_id)
dataset_ids, _ = self.RR.find_objects(data_product_id, PRED.hasDataset, id_only=True)
passing &= self.assertEquals(len(dataset_ids), 1)
if not dataset_ids:
return passing
dataset_id = dataset_ids[0]
stream_def_ids, _ = self.RR.find_objects(data_product_id, PRED.hasStreamDefinition, id_only=True)
passing &= self.assertEquals(len(dataset_ids), 1)
if not stream_def_ids:
return passing
stream_def_id = stream_def_ids[0]
output.append((data_product_id, stream_def_id, dataset_id))
return passing
def check_tempsf_instrument_data_product(self, reference_designator):
passing = True
info_list = []
passing &= self.check_data_product_reference(reference_designator, info_list)
if not passing: return passing
data_product_id, stream_def_id, dataset_id = info_list.pop()
now = time.time()
ntp_now = now + 2208988800
rdt = RecordDictionaryTool(stream_definition_id=stream_def_id)
rdt['time'] = [ntp_now]
rdt['temperature'] = [[ 25.3884, 26.9384, 24.3394, 23.3401, 22.9832,
29.4434, 26.9873, 15.2883, 16.3374, 14.5883, 15.7253, 18.4383,
15.3488, 17.2993, 10.2111, 11.5993, 10.9345, 9.4444, 9.9876,
10.9834, 11.0098, 5.3456, 4.2994, 4.3009]]
dataset_monitor = DatasetMonitor(dataset_id)
self.addCleanup(dataset_monitor.stop)
ParameterHelper.publish_rdt_to_data_product(data_product_id, rdt)
passing &= self.assertTrue(dataset_monitor.event.wait(20))
if not passing: return passing
granule = self.data_retriever.retrieve(dataset_id)
rdt = RecordDictionaryTool.load_from_granule(granule)
passing &= self.assert_array_almost_equal(rdt['time'], [ntp_now])
passing &= self.assert_array_almost_equal(rdt['temperature'], [[
25.3884, 26.9384, 24.3394, 23.3401, 22.9832, 29.4434, 26.9873,
15.2883, 16.3374, 14.5883, 15.7253, 18.4383, 15.3488, 17.2993,
10.2111, 11.5993, 10.9345, 9.4444, 9.9876, 10.9834, 11.0098,
5.3456, 4.2994, 4.3009]])
return passing
def check_trhph_instrument_data_products(self, reference_designator):
passing = True
info_list = []
passing &= self.check_data_product_reference(reference_designator, info_list)
if not passing:
return passing
data_product_id, stream_def_id, dataset_id = info_list.pop()
pdict = self.RR2.find_parameter_dictionary_of_stream_definition_using_has_parameter_dictionary(stream_def_id)
passing &= self.assertEquals(pdict.name, 'trhph_sample')
rdt = RecordDictionaryTool(stream_definition_id=stream_def_id)
# calibration constants
a = 1.98e-9
b = -2.45e-6
c = 9.28e-4
d = -0.0888
e = 0.731
V_s = 1.506
V_c = 0.
T = 11.8
r1 = 0.906
r2 = 4.095
r3 = 4.095
ORP_V = 1.806
Cl = np.nan
offset = 2008
gain = 4.0
# Normally this would be 50 per the DPS but the precision is %4.0f which truncates the values to the nearest 1...
ORP = ((ORP_V * 1000.) - offset) / gain
ntp_now = time.time() + 2208988800
rdt['cc_a'] = [a]
rdt['cc_b'] = [b]
rdt['cc_c'] = [c]
rdt['cc_d'] = [d]
rdt['cc_e'] = [e]
rdt['ref_temp_volts'] = [V_s]
rdt['resistivity_temp_volts'] = [V_c]
rdt['eh_sensor'] = [ORP_V]
rdt['resistivity_5'] = [r1]
rdt['resistivity_x1'] = [r2]
rdt['resistivity_x5'] = [r3]
rdt['cc_offset'] = [offset]
rdt['cc_gain'] = [gain]
rdt['time'] = [ntp_now]
passing &= self.assert_array_almost_equal(rdt['vent_fluid_temperaure'], [T], 2)
passing &= self.assert_array_almost_equal(rdt['vent_fluid_chloride_conc'], [Cl], 4)
passing &= self.assert_array_almost_equal(rdt['vent_fluid_orp'], [ORP], 4)
dataset_monitor = DatasetMonitor(dataset_id)
self.addCleanup(dataset_monitor.stop)
ParameterHelper.publish_rdt_to_data_product(data_product_id, rdt)
passing &= self.assertTrue(dataset_monitor.event.wait(60))
if not passing: return passing
granule = self.data_retriever.retrieve(dataset_id)
rdt = RecordDictionaryTool.load_from_granule(granule)
passing &= self.assert_array_almost_equal(rdt['vent_fluid_temperaure'], [T], 2)
passing &= self.assert_array_almost_equal(rdt['vent_fluid_chloride_conc'], [Cl], 4)
passing &= self.assert_array_almost_equal(rdt['vent_fluid_orp'], [ORP], 4)
return passing
def check_vel3d_instrument_data_products(self, reference_designator):
passing = True
info_list = []
passing &= self.check_data_product_reference(reference_designator, info_list)
if not passing:
return passing
data_product_id, stream_def_id, dataset_id = info_list.pop()
pdict = self.RR2.find_parameter_dictionary_of_stream_definition_using_has_parameter_dictionary(stream_def_id)
self.assertEquals(pdict.name, 'vel3d_b_sample')
rdt = RecordDictionaryTool(stream_definition_id=stream_def_id)
lat = 14.6846
lon = -51.044
ts = np.array([3319563600, 3319567200, 3319570800, 3319574400,
3319578000, 3319581600, 3319585200, 3319588800, 3319592400,
3319596000], dtype=np.float)
ve = np.array([ -3.2, 0.1, 0. , 2.3, -0.1, 5.6, 5.1, 5.8,
8.8, 10.3])
vn = np.array([ 18.2, 9.9, 12. , 6.6, 7.4, 3.4, -2.6, 0.2,
-1.5, 4.1])
vu = np.array([-1.1, -0.6, -1.4, -2, -1.7, -2, 1.3, -1.6, -1.1, -4.5])
ve_expected = np.array([-0.085136, -0.028752, -0.036007, 0.002136,
-0.023158, 0.043218, 0.056451, 0.054727, 0.088446, 0.085952])
vn_expected = np.array([ 0.164012, 0.094738, 0.114471, 0.06986, 0.07029,
0.049237, -0.009499, 0.019311, 0.012096, 0.070017])
vu_expected = np.array([-0.011, -0.006, -0.014, -0.02, -0.017, -0.02,
0.013, -0.016, -0.011, -0.045])
rdt['time'] = ts
rdt['lat'] = [lat] * 10
rdt['lon'] = [lon] * 10
rdt['turbulent_velocity_east'] = ve
rdt['turbulent_velocity_north'] = vn
rdt['turbulent_velocity_up'] = vu
passing &= self.assert_array_almost_equal(rdt['eastward_turbulent_velocity'],
ve_expected)
passing &= self.assert_array_almost_equal(rdt['northward_turbulent_velocity'],
vn_expected)
passing &= self.assert_array_almost_equal(rdt['upward_turbulent_velocity'],
vu_expected)
dataset_monitor = DatasetMonitor(dataset_id)
self.addCleanup(dataset_monitor.stop)
ParameterHelper.publish_rdt_to_data_product(data_product_id, rdt)
passing &= self.assertTrue(dataset_monitor.event.wait(20))
if not passing: return passing
granule = self.data_retriever.retrieve(dataset_id)
rdt = RecordDictionaryTool.load_from_granule(granule)
passing &= self.assert_array_almost_equal(rdt['eastward_turbulent_velocity'],
ve_expected)
passing &= self.assert_array_almost_equal(rdt['northward_turbulent_velocity'],
vn_expected)
passing &= self.assert_array_almost_equal(rdt['upward_turbulent_velocity'],
vu_expected)
return passing
def check_presta_instrument_data_products(self, reference_designator):
# Check the parsed data product make sure it's got everything it needs and can be published persisted etc.
# Absolute Pressure (SFLPRES_L0) is what comes off the instrumnet, SFLPRES_L1 is a pfunc
# Let's go ahead and publish some fake data!!!
# According to https://alfresco.oceanobservatories.org/alfresco/d/d/workspace/SpacesStore/63e16865-9d9e-4b11-b0b3-d5658faa5080/1341-00230_Data_Product_Spec_SFLPRES_OOI.pdf
# Appendix A. Example 1.
# p_psia_tide = 14.8670
# the tide should be 10.2504
passing = True
info_list = []
passing &= self.check_data_product_reference(reference_designator, info_list)
if not passing:
return passing
data_product_id, stream_def_id, dataset_id = info_list.pop()
now = time.time()
ntp_now = now + 2208988800.
rdt = RecordDictionaryTool(stream_definition_id=stream_def_id)
rdt['time'] = [ntp_now]
rdt['absolute_pressure'] = [14.8670]
passing &= self.assert_array_almost_equal(rdt['seafloor_pressure'], [10.2504], 4)
dataset_monitor = DatasetMonitor(dataset_id)
self.addCleanup(dataset_monitor.stop)
ParameterHelper.publish_rdt_to_data_product(data_product_id, rdt)
self.assertTrue(dataset_monitor.event.wait(20)) # Bumped to 20 to keep buildbot happy
if not passing: return passing
granule = self.data_retriever.retrieve(dataset_id)
rdt = RecordDictionaryTool.load_from_granule(granule)
passing &= self.assert_array_almost_equal(rdt['time'], [ntp_now])
passing &= self.assert_array_almost_equal(rdt['seafloor_pressure'], [10.2504], 4)
passing &= self.assert_array_almost_equal(rdt['absolute_pressure'], [14.8670], 4)
return passing
def check_rsn_instrument_data_product(self):
passing = True
# for RS03AXBS-MJ03A-06-PRESTA301 (PREST-A) there are a few listed data products
# Parsed, Engineering
# SFLPRES-0 SFLPRES-1
# Check for the two data products and make sure they have the proper parameters
# SFLPRES-0 should
data_products, _ = self.RR.find_resources_ext(alt_id_ns='PRE', alt_id='RS03AXBS-MJ03A-06-PRESTA301_SFLPRES_L0_DPID', id_only=True)
passing &=self.assertTrue(len(data_products)==1)
if not data_products:
return passing
data_product_id = data_products[0]
stream_defs, _ = self.RR.find_objects(data_product_id,PRED.hasStreamDefinition,id_only=False)
passing &= self.assertTrue(len(stream_defs)==1)
if not stream_defs:
return passing
# Assert that the stream definition has the correct reference designator
stream_def = stream_defs[0]
passing &= self.assertEquals(stream_def.stream_configuration['reference_designator'], 'RS03AXBS-MJ03A-06-PRESTA301')
# Get the pdict and make sure that the parameters corresponding to the available fields
# begin with the appropriate data product identifier
pdict_ids, _ = self.RR.find_objects(stream_def, PRED.hasParameterDictionary, id_only=True)
passing &= self.assertEquals(len(pdict_ids), 1)
if not pdict_ids:
return passing
pdict_id = pdict_ids[0]
pdict = DatasetManagementService.get_parameter_dictionary(pdict_id)
available_params = [pdict.get_context(i) for i in pdict.keys() if i in stream_def.available_fields]
for p in available_params:
if p.name=='time': # Ignore the domain parameter
continue
passing &= self.assertTrue(p.ooi_short_name.startswith('SFLPRES'))
passing &= self.check_presta_instrument_data_products('RS01SLBS-MJ01A-06-PRESTA101')
passing &= self.check_vel3d_instrument_data_products( 'RS01SLBS-MJ01A-12-VEL3DB101')
passing &= self.check_presta_instrument_data_products('RS03AXBS-MJ03A-06-PRESTA301')
passing &= self.check_vel3d_instrument_data_products( 'RS03AXBS-MJ03A-12-VEL3DB301')
passing &= self.check_tempsf_instrument_data_product( 'RS03ASHS-MJ03B-07-TMPSFA301')
passing &= self.check_vel3d_instrument_data_products( 'RS03INT2-MJ03D-12-VEL3DB304')
passing &= self.check_trhph_instrument_data_products( 'RS03INT1-MJ03C-10-TRHPHA301')
self.data_product_management.activate_data_product_persistence(data_product_id)
dataset_id = self.RR2.find_dataset_id_of_data_product_using_has_dataset(data_product_id)
granule = self.data_retriever.retrieve(dataset_id)
rdt = RecordDictionaryTool.load_from_granule(granule)
self.assert_array_almost_equal(rdt['seafloor_pressure'], [10.2504], 4)
self.assert_array_almost_equal(rdt['absolute_pressure'], [14.8670], 4)
self.data_product_management.suspend_data_product_persistence(data_product_id) # Should do nothing and not raise anything
return passing
def check_glider(self):
'''
# Check that glider GP05MOAS-GL001 assembly is defined by OOI preload (3 instruments)
'''
passing = True
GP05MOAS_GL001_device = self.retrieve_ooi_asset('GP05MOAS-GL001_PD')
child_devs, assns =self.RR.find_objects(subject=GP05MOAS_GL001_device._id, predicate=PRED.hasDevice, id_only=True)
passing &= self.assertEquals(len(child_devs), 3)
# Set GP05MOAS-GL001 Deployment to DEPLOYED
GP05MOAS_GL001_deploy = self.retrieve_ooi_asset('GP05MOAS-GL001_DEP')
passing &= self.transition_lcs_then_verify(resource_id=GP05MOAS_GL001_deploy._id, new_lcs_state=LCE.DEPLOY, verify='DEPLOYED')
# Activate Deployment for GP05MOAS-GL001
#self.OMS.activate_deployment(GP05MOAS_GL001_deploy._id)
# Deactivate Deployment for GP05MOAS-GL001
#self.OMS.deactivate_deployment(GP05MOAS_GL001_deploy._id)
# Create a new Deployment resource X without any assignment
x_deploy_id = self.create_basic_deployment(name='X_Deployment', description='new Deployment resource X without any assignment')
# Assign Deployment X to site GP05MOAS-GL001
GP05MOAS_GL001_psite = self.retrieve_ooi_asset('GP05MOAS-GL001')
self.OMS.deploy_platform_site(GP05MOAS_GL001_psite._id, x_deploy_id)
# Assign Deployment X to first device for GP05MOAS-GL001
GP05MOAS_GL001_device = self.retrieve_ooi_asset('GP05MOAS-GL001_PD')
self.IMS.deploy_platform_device(GP05MOAS_GL001_device._id, x_deploy_id)
# Set GP05MOAS-GL001 Deployment to PLANNED state
#self.transition_lcs_then_verify(resource_id=x_deploy_id, new_lcs_state=LCE.PLAN, verify='PLANNED')
# ??? already in planned
# Set second GP05MOAS-GL001 Deployment to DEPLOYED
passing &= self.transition_lcs_then_verify(resource_id=x_deploy_id, new_lcs_state=LCE.DEPLOY, verify='DEPLOYED')
self.dump_deployment(x_deploy_id)
# Activate second Deployment for GP05MOAS-GL001
#self.OMS.activate_deployment(x_deploy_id)
# Deactivate second Deployment for GP05MOAS-GL001
#self.OMS.deactivate_deployment(x_deploy_id)
return passing
def check_cg_assembly(self):
passing = True
# Set several CE01ISSM-RI002-* instrument devices to DEVELOPED state
# Assemble several CE01ISSM-RI002-* instruments to a CG CE01ISSM-RI002 component platform
# Set several CE01ISSM-RI002-* instrument devices to INTEGRATED state
# Assemble CE01ISSM-RI002 platform to CG CE01ISSM-LM001 station platform
# Set CE01ISSM-RI002 component device to INTEGRATED state
# Set CE01ISSM-LM001 station device to INTEGRATED state
# Set CE01ISSM-LM001 station device to DEPLOYED state (children maybe too?)
# Set CE01ISSM-LM001 Deployment to DEPLOYED
# Activate CE01ISSM-LM001 platform assembly deployment
# Dectivate CE01ISSM-LM001 platform assembly deployment
# Set CE01ISSM-LM001 Deployment to INTEGRATED state
# Set CE01ISSM-LM001 station device to INTEGRATED state
# Set CE01ISSM-RI002 component device to INTEGRATED state
# Set CE01ISSM-RI002 component device to INTEGRATED state
# Disassemble CE01ISSM-RI002 platform from CG CE01ISSM-LM001 station platform
# Disassemble all CE01ISSM-RI002-* instruments from a CG CE01ISSM-RI002 component platform
# Retire instrument one for CE01ISSM-RI002-*
# Retire device one for CE01ISSM-RI002
# Retire device one for CE01ISSM-LM001
return passing
# -------------------------------------------------------------------------
def retrieve_ooi_asset(self, alt_id='', namespace='PRE'):
dp_list, _ = self.RR.find_resources_ext(alt_id_ns=namespace, alt_id=alt_id)
self.assertEquals(len(dp_list), 1)
return dp_list[0]
def transition_lcs_then_verify(self, resource_id, new_lcs_state, verify):
ret = self.RR2.advance_lcs(resource_id, new_lcs_state)
resource_obj = self.RR.read(resource_id)
return self.assertEquals(resource_obj.lcstate, verify)
def create_basic_deployment(self, name='', description=''):
start = IonTime(datetime.datetime(2013,1,1))
end = IonTime(datetime.datetime(2014,1,1))
temporal_bounds = IonObject(OT.TemporalBounds, name='planned', start_datetime=start.to_string(), end_datetime=end.to_string())
deployment_obj = IonObject(RT.Deployment,
name=name,
description=description,
context=IonObject(OT.CabledNodeDeploymentContext),
constraint_list=[temporal_bounds])
return self.OMS.create_deployment(deployment_obj)
def validate_deployment_activated(self, deployment_id=''):
site_id, device_id = self.get_deployment_ids(deployment_id)
assocs = self.RR.find_associations(subject=site_id, predicate=PRED.hasDevice, object=device_id)
return self.assertEquals(len(assocs), 1)
def validate_deployment_deactivated(self, deployment_id=''):
site_id, device_id = self.get_deployment_ids(deployment_id)
assocs = self.RR.find_associations(subject=site_id, predicate=PRED.hasDevice, object=device_id)
return self.assertEquals(len(assocs), 0)
def dump_deployment(self, deployment_id='', name=""):
#site_id, device_id = self.get_deployment_ids(deployment_id)
resource_list,_ = self.RR.find_subjects(predicate=PRED.hasDeployment, object=deployment_id, id_only=True)
resource_list.append(deployment_id)
resources = self.RR.read_mult(resource_list )
log.debug('--------- dump_deployment %s summary---------------', name)
for resource in resources:
log.debug('%s: %s (%s)', resource._get_type(), resource.name, resource._id)
log.debug('--------- dump_deployment %s full dump ---------------', name)
for resource in resources:
log.debug('resource: %s ', resource)
log.debug('--------- dump_deployment %s end ---------------', name)
#assocs = self.container.resource_registry.find_assoctiations(anyside=deployment_id)
# assocs = Container.instance.resource_registry.find_assoctiations(anyside=deployment_id)
# log.debug('--------- dump_deployment ---------------')
# for assoc in assocs:
# log.debug('SUBJECT: %s PREDICATE: %s OBJET: %s', assoc.s, assoc.p, assoc.o)
# log.debug('--------- dump_deployment end ---------------')
def get_deployment_ids(self, deployment_id=''):
devices = []
sites = []
idevice_list,_ = self.RR.find_subjects(RT.InstrumentDevice, PRED.hasDeployment, deployment_id, id_only=True)
pdevice_list,_ = self.RR.find_subjects(RT.PlatformDevice, PRED.hasDeployment, deployment_id, id_only=True)
devices = idevice_list + pdevice_list
self.assertEquals(1, len(devices))
isite_list,_ = self.RR.find_subjects(RT.InstrumentSite, PRED.hasDeployment, deployment_id, id_only=True)
psite_list,_ = self.RR.find_subjects(RT.PlatformSite, PRED.hasDeployment, deployment_id, id_only=True)
sites = isite_list + psite_list
self.assertEquals(1, len(sites))
return sites[0], devices[0]
def _find_resource_in_list(self, res_list, attr, attr_val, assert_found=True):
for res in res_list:
v = getattr(res, attr, None)
if v == attr_val:
return res
if assert_found:
self.assertTrue(False, "Attribute %s value %s not found in list" % (attr, attr_val))
return None
# -------------------------------------------------------------------------
def _get_caller(self):
s = inspect.stack()
return "%s:%s" % (s[2][1], s[2][2])
@assertion_wrapper
def assert_array_almost_equal(self, *args, **kwargs):
np.testing.assert_array_almost_equal(*args, **kwargs)
@assertion_wrapper
def assertEquals(self, *args, **kwargs):
IonIntegrationTestCase.assertEquals(self, *args, **kwargs)
@assertion_wrapper
def assertTrue(self, *args, **kwargs):
IonIntegrationTestCase.assertTrue(self, *args, **kwargs)
class TransformManagementServiceIntTest(IonIntegrationTestCase):
def setUp(self):
# set up the container
self._start_container()
self.container.start_rel_from_url('res/deploy/r2dm.yml')
self.pubsub_cli = PubsubManagementServiceClient(node=self.container.node)
self.tms_cli = TransformManagementServiceClient(node=self.container.node)
self.rr_cli = ResourceRegistryServiceClient(node=self.container.node)
self.procd_cli = ProcessDispatcherServiceClient(node=self.container.node)
self.input_stream_id = self.pubsub_cli.create_stream(name='input_stream',original=True)
self.input_subscription_id = self.pubsub_cli.create_subscription(query=StreamQuery(stream_ids=[self.input_stream_id]),exchange_name='transform_input',name='input_subscription')
self.output_stream_id = self.pubsub_cli.create_stream(name='output_stream',original=True)
self.process_definition = ProcessDefinition(name='basic_transform_definition')
self.process_definition.executable = {'module': 'ion.processes.data.transforms.transform_example',
'class':'TransformExample'}
self.process_definition_id = self.procd_cli.create_process_definition(process_definition=self.process_definition)
@attr('LOCOINT')
@unittest.skipIf(os.getenv('CEI_LAUNCH_TEST', False),'Not integrated for CEI')
def test_create_transform(self):
configuration = {'program_args':{'arg1':'value'}}
transform_id = self.tms_cli.create_transform(
name='test_transform',
in_subscription_id=self.input_subscription_id,
out_streams={'output':self.output_stream_id},
process_definition_id=self.process_definition_id)
# test transform creation in rr
transform = self.rr_cli.read(transform_id)
self.assertEquals(transform.name,'test_transform')
# test associations
predicates = [PRED.hasSubscription, PRED.hasOutStream, PRED.hasProcessDefinition]
assocs = []
for p in predicates:
assocs += self.rr_cli.find_associations(transform_id,p,id_only=True)
self.assertEquals(len(assocs),3)
# test process creation
transform = self.tms_cli.read_transform(transform_id)
pid = transform.process_id
proc = self.container.proc_manager.procs.get(pid)
self.assertIsInstance(proc,TransformExample)
# clean up
self.tms_cli.delete_transform(transform_id)
def test_create_transform_no_procdef(self):
with self.assertRaises(NotFound):
self.tms_cli.create_transform(name='test',in_subscription_id=self.input_subscription_id)
def test_create_transform_bad_procdef(self):
with self.assertRaises(NotFound):
self.tms_cli.create_transform(name='test',
in_subscription_id=self.input_subscription_id,
process_definition_id='bad')
def test_create_transform_no_config(self):
transform_id = self.tms_cli.create_transform(
name='test_transform',
in_subscription_id=self.input_subscription_id,
out_streams={'output':self.output_stream_id},
process_definition_id=self.process_definition_id,
)
self.tms_cli.delete_transform(transform_id)
def test_create_transform_name_failure(self):
transform_id = self.tms_cli.create_transform(
name='test_transform',
in_subscription_id=self.input_subscription_id,
out_streams={'output':self.output_stream_id},
process_definition_id=self.process_definition_id,
)
with self.assertRaises(BadRequest):
transform_id = self.tms_cli.create_transform(
name='test_transform',
in_subscription_id=self.input_subscription_id,
out_streams={'output':self.output_stream_id},
process_definition_id=self.process_definition_id,
)
self.tms_cli.delete_transform(transform_id)
@attr('LOCOINT')
@unittest.skipIf(os.getenv('CEI_LAUNCH_TEST', False),'Not integrated for CEI')
def test_create_no_output(self):
transform_id = self.tms_cli.create_transform(
name='test_transform',
in_subscription_id=self.input_subscription_id,
process_definition_id=self.process_definition_id,
)
predicates = [PRED.hasSubscription, PRED.hasOutStream, PRED.hasProcessDefinition]
assocs = []
for p in predicates:
assocs += self.rr_cli.find_associations(transform_id,p,id_only=True)
self.assertEquals(len(assocs),2)
# test process creation
transform = self.tms_cli.read_transform(transform_id)
pid = transform.process_id
proc = self.container.proc_manager.procs.get(pid)
self.assertIsInstance(proc,TransformExample)
self.tms_cli.delete_transform(transform_id)
def test_read_transform_exists(self):
trans_obj = IonObject(RT.Transform,name='trans_obj')
trans_id, _ = self.rr_cli.create(trans_obj)
res = self.tms_cli.read_transform(trans_id)
actual = self.rr_cli.read(trans_id)
self.assertEquals(res._id,actual._id)
def test_read_transform_nonexist(self):
with self.assertRaises(NotFound) as e:
self.tms_cli.read_transform('123')
def test_activate_transform(self):
transform_id = self.tms_cli.create_transform(
name='test_transform',
in_subscription_id=self.input_subscription_id,
out_streams={'output':self.output_stream_id},
process_definition_id=self.process_definition_id
)
self.tms_cli.activate_transform(transform_id)
# pubsub check if activated?
self.tms_cli.delete_transform(transform_id)
def test_activate_transform_nonexist(self):
with self.assertRaises(NotFound):
self.tms_cli.activate_transform('1234')
def test_delete_transform(self):
transform_id = self.tms_cli.create_transform(
name='test_transform',
in_subscription_id=self.input_subscription_id,
process_definition_id=self.process_definition_id
)
self.tms_cli.delete_transform(transform_id)
# assertions
with self.assertRaises(NotFound):
self.rr_cli.read(transform_id)
def test_delete_transform_nonexist(self):
with self.assertRaises(NotFound):
self.tms_cli.delete_transform('123')
def test_execute_transform(self):
# set up
process_definition = ProcessDefinition(name='procdef_execute')
process_definition.executable['module'] = 'ion.processes.data.transforms.transform_example'
process_definition.executable['class'] = 'ReverseTransform'
data = [1,2,3]
process_definition_id, _ = self.rr_cli.create(process_definition)
retval = self.tms_cli.execute_transform(process_definition_id,data)
self.assertEquals(retval,[3,2,1])
def test_integrated_transform(self):
'''
This example script runs a chained three way transform:
B
A <
C
Where A is the even_odd transform (generates a stream of even and odd numbers from input)
and B and C are the basic transforms that receive even and odd input
'''
cc = self.container
assertions = self.assertTrue
pubsub_cli = PubsubManagementServiceClient(node=cc.node)
rr_cli = ResourceRegistryServiceClient(node=cc.node)
tms_cli = TransformManagementServiceClient(node=cc.node)
#-------------------------------
# Process Definition
#-------------------------------
# Create the process definition for the basic transform
process_definition = IonObject(RT.ProcessDefinition, name='basic_transform_definition')
process_definition.executable = {
'module': 'ion.processes.data.transforms.transform_example',
'class':'TransformExample'
}
basic_transform_definition_id, _ = rr_cli.create(process_definition)
# Create The process definition for the TransformEvenOdd
process_definition = IonObject(RT.ProcessDefinition, name='evenodd_transform_definition')
process_definition.executable = {
'module': 'ion.processes.data.transforms.transform_example',
'class':'TransformEvenOdd'
}
evenodd_transform_definition_id, _ = rr_cli.create(process_definition)
#-------------------------------
# Streams
#-------------------------------
streams = [pubsub_cli.create_stream() for i in xrange(5)]
#-------------------------------
# Subscriptions
#-------------------------------
query = StreamQuery(stream_ids=[streams[0]])
input_subscription_id = pubsub_cli.create_subscription(query=query, exchange_name='input_queue')
query = StreamQuery(stream_ids = [streams[1]]) # even output
even_subscription_id = pubsub_cli.create_subscription(query=query, exchange_name='even_queue')
query = StreamQuery(stream_ids = [streams[2]]) # odd output
odd_subscription_id = pubsub_cli.create_subscription(query=query, exchange_name='odd_queue')
#-------------------------------
# Launch the EvenOdd Transform
#-------------------------------
evenodd_id = tms_cli.create_transform(name='even_odd',
in_subscription_id=input_subscription_id,
out_streams={'even':streams[1], 'odd':streams[2]},
process_definition_id=evenodd_transform_definition_id,
configuration={})
tms_cli.activate_transform(evenodd_id)
#-------------------------------
# Launch the Even Processing Transform
#-------------------------------
even_transform_id = tms_cli.create_transform(name='even_transform',
in_subscription_id = even_subscription_id,
out_streams={'even_plus1':streams[3]},
process_definition_id=basic_transform_definition_id,
configuration={})
tms_cli.activate_transform(even_transform_id)
#-------------------------------
# Launch the Odd Processing Transform
#-------------------------------
odd_transform_id = tms_cli.create_transform(name='odd_transform',
in_subscription_id = odd_subscription_id,
out_streams={'odd_plus1':streams[4]},
process_definition_id=basic_transform_definition_id,
configuration={})
tms_cli.activate_transform(odd_transform_id)
#-------------------------------
# Set up final subscribers
#-------------------------------
evenplus1_subscription_id = pubsub_cli.create_subscription(
query=StreamQuery([streams[3]]),
exchange_name='evenplus1_queue',
name='EvenPlus1Subscription',
description='EvenPlus1 SubscriptionDescription'
)
oddplus1_subscription_id = pubsub_cli.create_subscription(
query=StreamQuery([streams[4]]),
exchange_name='oddplus1_queue',
name='OddPlus1Subscription',
description='OddPlus1 SubscriptionDescription'
)
total_msg_count = 2
msgs = gevent.queue.Queue()
def even1_message_received(message, headers):
input = int(message.get('num'))
assertions( (input % 2) ) # Assert it is odd (transform adds 1)
msgs.put(True)
def odd1_message_received(message, headers):
input = int(message.get('num'))
assertions(not (input % 2)) # Assert it is even
msgs.put(True)
subscriber_registrar = StreamSubscriberRegistrar(process=cc, node=cc.node)
even_subscriber = subscriber_registrar.create_subscriber(exchange_name='evenplus1_queue', callback=even1_message_received)
odd_subscriber = subscriber_registrar.create_subscriber(exchange_name='oddplus1_queue', callback=odd1_message_received)
# Start subscribers
even_subscriber.start()
odd_subscriber.start()
# Activate subscriptions
pubsub_cli.activate_subscription(evenplus1_subscription_id)
pubsub_cli.activate_subscription(oddplus1_subscription_id)
#-------------------------------
# Set up fake stream producer
#-------------------------------
pid = cc.spawn_process(name='dummy_process_for_test',
module='pyon.ion.process',
cls='SimpleProcess',
config={})
dummy_process = cc.proc_manager.procs[pid]
# Normally the user does not see or create the publisher, this is part of the containers business.
# For the test we need to set it up explicitly
publisher_registrar = StreamPublisherRegistrar(process=dummy_process, node=cc.node)
stream_publisher = publisher_registrar.create_publisher(stream_id=streams[0])
#-------------------------------
# Start test
#-------------------------------
# Publish a stream
for i in xrange(total_msg_count):
stream_publisher.publish({'num':str(i)})
time.sleep(0.5)
for i in xrange(total_msg_count * 2):
try:
msgs.get()
except Empty:
assertions(False, "Failed to process all messages correctly.")
"""
class TestIntDataAcquisitionManagementService(IonIntegrationTestCase):
def setUp(self):
# Start container
self._start_container()
self.container.start_rel_from_url('res/deploy/r2deploy.yml')
# Now create client to DataAcquisitionManagementService
self.client = DataAcquisitionManagementServiceClient(node=self.container.node)
self.rrclient = ResourceRegistryServiceClient(node=self.container.node)
self.dataproductclient = DataProductManagementServiceClient(node=self.container.node)
self.dataprocessclient = DataProcessManagementServiceClient(node=self.container.node)
def tearDown(self):
pass
#@unittest.skip('Not done yet.')
def test_data_source_ops(self):
# test creating a new data source
print 'Creating new data source'
datasource_obj = IonObject(RT.DataSource,
name='DataSource1',
description='instrument based new source' ,
data_source_type='sbe37')
try:
ds_id = self.client.create_data_source(datasource_obj)
except BadRequest as ex:
self.fail("failed to create new data source: %s" %ex)
print 'new data source id = ', ds_id
# test reading a non-existent data source
print 'reading non-existent data source'
try:
dp_obj = self.client.read_data_source('some_fake_id')
except NotFound as ex:
pass
else:
self.fail("non-existing data source was found during read: %s" %dp_obj)
# update a data source (tests read also)
print 'Updating data source'
# first get the existing data source object
try:
datasource_obj = self.client.read_data_source(ds_id)
except NotFound as ex:
self.fail("existing data source was not found during read")
else:
pass
# now tweak the object
datasource_obj.description = 'the very first data source'
# now write the dp back to the registry
try:
update_result = self.client.update_data_source(datasource_obj)
except NotFound as ex:
self.fail("existing data source was not found during update")
except Conflict as ex:
self.fail("revision conflict exception during data source update")
#else:
# self.assertTrue(update_result == True)
# now get the data source back to see if it was updated
try:
datasource_obj = self.client.read_data_source(ds_id)
except NotFound as ex:
self.fail("existing data source was not found during read")
else:
pass
self.assertTrue(datasource_obj.description == 'the very first data source')
# now 'delete' the data source
print "deleting data source"
try:
delete_result = self.client.force_delete_data_source(ds_id)
except NotFound as ex:
self.fail("existing data source was not found during delete")
#self.assertTrue(delete_result == True)
# now try to get the deleted dp object
try:
dp_obj = self.client.read_data_source(ds_id)
except NotFound as ex:
pass
else:
self.fail("deleted data source was found during read")
# now try to delete the already deleted data source object
print "deleting non-existing data source"
try:
delete_result = self.client.delete_data_source(ds_id)
except NotFound as ex:
pass
else:
self.fail("non-existing data source was found during delete")
def test_register_instrument(self):
# set up initial instrument to register
instrument_obj = IonObject(RT.InstrumentDevice, name='Inst1',description='an instrument that is creating the data product')
instrument_id, rev = self.rrclient.create(instrument_obj)
self.base_register_instrument(instrument_id)
def test_register_platform(self):
# set up initial instrument to register
platform_obj = IonObject(RT.PlatformDevice, name='Plat1',description='a platform that is creating the data product')
platform_id, rev = self.rrclient.create(platform_obj)
#@unittest.skip('Not done yet.')
def base_register_instrument(self, instrument_id):
# Register an instrument as a data producer in coordination with DM PubSub: create stream, register and create producer object
dataproduct_obj = IonObject(RT.DataProduct, name='DataProduct1',description='sample data product')
dataproduct_id, rev = self.rrclient.create(dataproduct_obj)
# test registering a new data producer
try:
ds_id = self.client.register_instrument(instrument_id)
except BadRequest as ex:
self.fail("failed to create new data producer: %s" %ex)
print 'new data producer id = ', ds_id
# test assigning a data product to an instrument, creating the stream for the product
try:
self.client.assign_data_product(instrument_id, dataproduct_id)
self.client.assign_data_product_source(dataproduct_id, instrument_id)
except BadRequest as ex:
self.fail("failed to assign data product to data producer: %s" %ex)
except NotFound as ex:
self.fail("failed to assign data product to data producer: %s" %ex)
assocs = self.rrclient.find_associations(dataproduct_id, PRED.hasSource, instrument_id)
if not assocs or len(assocs) == 0:
self.fail("failed to assign data product to data producer")
# test UNassigning a data product from instrument, deleting the stream for the product
try:
self.client.unassign_data_product(instrument_id, dataproduct_id)
self.client.unassign_data_product_source(dataproduct_id, instrument_id)
except BadRequest as ex:
self.fail("failed to failed to UNassign data product to data producer data producer: %s" %ex)
except NotFound as ex:
self.fail("failed to failed to UNassign data product to data producer data producer: %s" %ex)
assocs = self.rrclient.find_associations(dataproduct_id, PRED.hasSource, instrument_id)
if assocs:
self.fail("failed to unassign data product to data producer")
# test UNregistering a new data producer
try:
ds_id = self.client.unregister_instrument(instrument_id)
except NotFound as ex:
self.fail("failed to unregister instrument producer: %s" %ex)
def test_register_external_data_set(self):
# Register an external data set as a data producer in coordination with DM PubSub: create stream, register and create producer object
# set up initial instrument to register
ext_dataset_obj = IonObject(RT.ExternalDataset, name='DataSet1',description='an external data feed')
ext_dataset_id, rev = self.rrclient.create(ext_dataset_obj)
dataproduct_obj = IonObject(RT.DataProduct, name='DataProduct1',description='sample data product')
dataproduct_id, rev = self.rrclient.create(dataproduct_obj)
# test registering a new external data set
try:
ds_id = self.client.register_external_data_set(ext_dataset_id)
except BadRequest as ex:
self.fail("failed to create new data producer: %s" %ex)
print 'new data producer id = ', ds_id
# test assigning a data product to an ext_dataset_id, creating the stream for the product
try:
self.client.assign_data_product(ext_dataset_id, dataproduct_id)
except BadRequest as ex:
self.fail("failed to assign data product to data producer: %s" %ex)
except NotFound as ex:
self.fail("failed to assign data product to data producer: %s" %ex)
# test UNassigning a data product from ext_dataset_id, deleting the stream for the product
try:
self.client.unassign_data_product(ext_dataset_id, dataproduct_id)
except BadRequest as ex:
self.fail("failed to failed to UNassign data product to data producer data producer: %s" %ex)
except NotFound as ex:
self.fail("failed to failed to UNassign data product to data producer data producer: %s" %ex)
# test UNregistering a external data set
try:
ds_id = self.client.unregister_external_data_set(ext_dataset_id)
except NotFound as ex:
self.fail("failed to unregister instrument producer: %s" %ex)
#@unittest.skip('not ready')
def test_eoi_resources(self):
#
# test creating a new data provider
#
print 'Creating new external_data_provider'
dataprovider_obj = IonObject(RT.ExternalDataProvider,
name='ExtDataProvider1',
description='external data provider ')
try:
dataprovider_id = self.client.create_external_data_provider(dataprovider_obj)
except BadRequest as ex:
self.fail("failed to create new data provider: %s" %ex)
print 'new data provider id = ', dataprovider_id
#
# test creating a new data source
#
print 'Creating new data source'
datasource_obj = IonObject(RT.DataSource,
name='DataSource1',
description='data source ',
data_source_type='DAP')
try:
datasource_id = self.client.create_data_source(datasource_obj)
except BadRequest as ex:
self.fail("failed to create new data source: %s" %ex)
print 'new data source id = ', datasource_id
#
# test creating a new data source model
#
print 'Creating new data source model'
datamodel_obj = IonObject(RT.DataSourceModel,
name='DataSourceModel1',
description='data source model')
try:
datamodel_id = self.client.create_data_source_model(datamodel_obj)
except BadRequest as ex:
self.fail("failed to create new data source model: %s" %ex)
print 'new data source model id = ', datamodel_id
#
# test creating a new external data set
#
print 'Creating new external data set'
dataset_obj = IonObject(RT.ExternalDataset,
name='ExternalDataSet1',
description='external data set ')
try:
extdataset_id = self.client.create_external_dataset(dataset_obj)
except BadRequest as ex:
self.fail("failed to create new external data set: %s" %ex)
print 'new external data set id = ', extdataset_id
#
# test creating a new dataset agent instance
#
print 'Creating new external data agent '
datasetagent_obj = IonObject(RT.ExternalDatasetAgent,
name='ExternalDatasetAgent1',
description='external data agent ')
try:
datasetagent_id = self.client.create_external_dataset_agent(datasetagent_obj)
except BadRequest as ex:
self.fail("failed to create new external dataset agent: %s" %ex)
print 'new external data agent id = ', datasetagent_id
#
# test creating a new datasource agent instance
#
print 'Creating new data source agent '
datasourceagent_obj = IonObject(RT.DataSourceAgent,
name='DataSourceAgent1',
description=' DataSource agent ')
try:
datasource_agent_id = self.client.create_data_source_agent(datasourceagent_obj)
except BadRequest as ex:
self.fail("failed to create new external datasource agent: %s" %ex)
print 'new external data agent id = ', datasource_agent_id
#
# test creating a new dataset agent instance
#
print 'Creating new external dataset agent instance'
datasetagentinstance_obj = IonObject(RT.ExternalDatasetAgentInstance,
name='ExternalDatasetAgentInstance1',
description='external dataset agent instance ')
try:
datasetagentinstance_id = self.client.create_external_dataset_agent_instance(datasetagentinstance_obj, datasetagent_id)
except BadRequest as ex:
self.fail("failed to create new external dataset agent instance: %s" %ex)
print 'new external data agent instance id = ', datasetagentinstance_id
#
# test creating a new datasource agent instance
#
print 'Creating new data source agent '
datasourceagentinstance_obj = IonObject(RT.DataSourceAgentInstance,
name='ExternalDataSourceAgentInstance1',
description='external DataSource agent instance ')
try:
datasource_agent_instance_id = self.client.create_data_source_agent_instance(datasourceagentinstance_obj)
except BadRequest as ex:
self.fail("failed to create new external datasource agent instance: %s" %ex)
print 'new external data agent id = ', datasource_agent_instance_id
#
# test assign / unassign
#
self.client.unassign_data_source_from_external_data_provider(datasource_id, dataprovider_id)
self.client.unassign_data_source_from_data_model(datasource_id, datamodel_id)
self.client.unassign_external_dataset_from_data_source(extdataset_id, datasource_id)
#
# test read
#
try:
dp_obj = self.client.read_external_data_provider(dataprovider_id)
except NotFound as ex:
self.fail("existing data provicer was not found during read")
else:
pass
try:
dp_obj = self.client.read_data_source(datasource_id)
except NotFound as ex:
self.fail("existing data source was not found during read")
else:
pass
#
# test delete
#
try:
self.client.delete_external_data_provider(dataprovider_id)
self.client.delete_data_source(datasource_id)
self.client.delete_external_dataset(extdataset_id)
self.client.delete_data_source_model(datamodel_id)
self.client.delete_external_dataset_agent(datasetagent_id)
self.client.delete_data_source_agent_instance(datasource_agent_instance_id)
self.client.force_delete_external_data_provider(dataprovider_id)
self.client.force_delete_data_source(datasource_id)
self.client.force_delete_external_dataset(extdataset_id)
self.client.force_delete_data_source_model(datamodel_id)
self.client.force_delete_external_dataset_agent(datasetagent_id)
self.client.force_delete_data_source_agent_instance(datasource_agent_instance_id)
except NotFound as ex:
self.fail("existing data product was not found during delete")
# test reading a non-existent data product
print 'reading non-existent data product'
try:
bad_obj = self.client.read_external_data_provider('some_fake_id')
except NotFound as ex:
pass
else:
self.fail("non-existing data product was found during read: %s" %bad_obj)
def make_grt_parser(self):
return self.client.create_parser(Parser(name='grt', description='', module='ion.util.parsers.global_range_test', method='grt_parser', config=None))
@unittest.skip("Deprecated")
def test_qc_attachment(self):
instrument_device = InstrumentDevice(name='whatever')
instrument_device_id,_ = self.rrclient.create(instrument_device)
self.addCleanup(self.rrclient.delete, instrument_device_id)
self.client.register_instrument(instrument_device_id)
self.addCleanup(self.client.unregister_instrument, instrument_device_id)
dp = DataProduct(name='instrument output')
dp_id,_ = self.rrclient.create(dp)
self.addCleanup(self.rrclient.delete, dp_id)
parser_id = self.make_grt_parser()
attachment = Attachment(name='qc ref', attachment_type=AttachmentType.REFERENCE,content=global_range_test_document, context=ReferenceAttachmentContext(parser_id=parser_id))
att_id = self.rrclient.create_attachment(dp_id, attachment)
self.addCleanup(self.rrclient.delete_attachment, att_id)
attachment2 = Attachment(name='qc ref2', attachment_type=AttachmentType.REFERENCE, content=global_range_test_document2, context=ReferenceAttachmentContext(parser_id=parser_id))
att2_id = self.rrclient.create_attachment(dp_id, attachment2)
self.addCleanup(self.rrclient.delete_attachment, att2_id)
self.client.assign_data_product(instrument_device_id, dp_id)
self.addCleanup(self.client.unassign_data_product, instrument_device_id, dp_id)
svm = StoredValueManager(self.container)
doc = svm.read_value('grt_CE01ISSM-MF005-01-CTDBPC999_TEMPWAT')
np.testing.assert_array_almost_equal(doc['grt_min_value'], -2.)
class TestWorkflowManagementIntegration(IonIntegrationTestCase):
def setUp(self):
# Start container
self._start_container()
self.container.start_rel_from_url('res/deploy/r2deploy.yml')
# Now create client to DataProductManagementService
self.rrclient = ResourceRegistryServiceClient(node=self.container.node)
self.damsclient = DataAcquisitionManagementServiceClient(node=self.container.node)
self.pubsubclient = PubsubManagementServiceClient(node=self.container.node)
self.ingestclient = IngestionManagementServiceClient(node=self.container.node)
self.imsclient = InstrumentManagementServiceClient(node=self.container.node)
self.dataproductclient = DataProductManagementServiceClient(node=self.container.node)
self.dataprocessclient = DataProcessManagementServiceClient(node=self.container.node)
self.datasetclient = DatasetManagementServiceClient(node=self.container.node)
self.workflowclient = WorkflowManagementServiceClient(node=self.container.node)
self.process_dispatcher = ProcessDispatcherServiceClient(node=self.container.node)
self.ctd_stream_def = SBE37_CDM_stream_definition()
def _create_ctd_input_stream_and_data_product(self, data_product_name='ctd_parsed'):
cc = self.container
assertions = self.assertTrue
#-------------------------------
# Create CTD Parsed as the initial data product
#-------------------------------
# create a stream definition for the data from the ctd simulator
ctd_stream_def = SBE37_CDM_stream_definition()
ctd_stream_def_id = self.pubsubclient.create_stream_definition(container=self.ctd_stream_def, name='Simulated CTD data')
log.debug('Creating new CDM data product with a stream definition')
dp_obj = IonObject(RT.DataProduct,name=data_product_name,description='ctd stream test')
try:
ctd_parsed_data_product_id = self.dataproductclient.create_data_product(dp_obj, ctd_stream_def_id)
except Exception as ex:
self.fail("failed to create new data product: %s" %ex)
log.debug('new ctd_parsed_data_product_id = ', ctd_parsed_data_product_id)
#Only ever need one device for testing purposes.
instDevice_obj,_ = self.rrclient.find_resources(restype=RT.InstrumentDevice, name='SBE37IMDevice')
if instDevice_obj:
instDevice_id = instDevice_obj[0]._id
else:
instDevice_obj = IonObject(RT.InstrumentDevice, name='SBE37IMDevice', description="SBE37IMDevice", serial_number="12345" )
instDevice_id = self.imsclient.create_instrument_device(instrument_device=instDevice_obj)
self.damsclient.assign_data_product(input_resource_id=instDevice_id, data_product_id=ctd_parsed_data_product_id)
self.dataproductclient.activate_data_product_persistence(data_product_id=ctd_parsed_data_product_id, persist_data=False, persist_metadata=False)
# Retrieve the id of the OUTPUT stream from the out Data Product
stream_ids, _ = self.rrclient.find_objects(ctd_parsed_data_product_id, PRED.hasStream, None, True)
assertions(len(stream_ids) > 0 )
ctd_stream_id = stream_ids[0]
return ctd_stream_id, ctd_parsed_data_product_id
def _start_simple_input_stream_process(self, ctd_stream_id):
return self._start_input_stream_process(ctd_stream_id)
def _start_sinusoidal_input_stream_process(self, ctd_stream_id):
return self._start_input_stream_process(ctd_stream_id, 'ion.processes.data.sinusoidal_stream_publisher', 'SinusoidalCtdPublisher')
def _start_input_stream_process(self, ctd_stream_id, module = 'ion.processes.data.ctd_stream_publisher', class_name= 'SimpleCtdPublisher'):
###
### Start the process for producing the CTD data
###
# process definition for the ctd simulator...
producer_definition = ProcessDefinition()
producer_definition.executable = {
'module':module,
'class':class_name
}
ctd_sim_procdef_id = self.process_dispatcher.create_process_definition(process_definition=producer_definition)
# Start the ctd simulator to produce some data
configuration = {
'process':{
'stream_id':ctd_stream_id,
}
}
ctd_sim_pid = self.process_dispatcher.schedule_process(process_definition_id=ctd_sim_procdef_id, configuration=configuration)
return ctd_sim_pid
def _start_output_stream_listener(self, data_product_stream_ids, message_count_per_stream=10):
cc = self.container
assertions = self.assertTrue
###
### Make a subscriber in the test to listen for transformed data
###
salinity_subscription_id = self.pubsubclient.create_subscription(
query=StreamQuery(data_product_stream_ids),
exchange_name = 'workflow_test',
name = "test workflow transformations",
)
pid = cc.spawn_process(name='dummy_process_for_test',
module='pyon.ion.process',
cls='SimpleProcess',
config={})
dummy_process = cc.proc_manager.procs[pid]
subscriber_registrar = StreamSubscriberRegistrar(process=dummy_process, node=cc.node)
result = gevent.event.AsyncResult()
results = []
def message_received(message, headers):
# Heads
log.warn(' data received!')
results.append(message)
if len(results) >= len(data_product_stream_ids) * message_count_per_stream: #Only wait for so many messages - per stream
result.set(True)
subscriber = subscriber_registrar.create_subscriber(exchange_name='workflow_test', callback=message_received)
subscriber.start()
# after the queue has been created it is safe to activate the subscription
self.pubsubclient.activate_subscription(subscription_id=salinity_subscription_id)
# Assert that we have received data
assertions(result.get(timeout=30))
self.pubsubclient.deactivate_subscription(subscription_id=salinity_subscription_id)
subscriber.stop()
return results
def _validate_messages(self, results):
cc = self.container
assertions = self.assertTrue
first_salinity_values = None
for message in results:
try:
psd = PointSupplementStreamParser(stream_definition=self.ctd_stream_def, stream_granule=message)
temp = psd.get_values('temperature')
log.info(psd.list_field_names())
except KeyError as ke:
temp = None
if temp is not None:
assertions(isinstance(temp, numpy.ndarray))
log.info( 'temperature=' + str(numpy.nanmin(temp)))
first_salinity_values = None
else:
psd = PointSupplementStreamParser(stream_definition=SalinityTransform.outgoing_stream_def, stream_granule=message)
log.info( psd.list_field_names())
# Test the handy info method for the names of fields in the stream def
assertions('salinity' in psd.list_field_names())
# you have to know the name of the coverage in stream def
salinity = psd.get_values('salinity')
log.info( 'salinity=' + str(numpy.nanmin(salinity)))
assertions(isinstance(salinity, numpy.ndarray))
assertions(numpy.nanmin(salinity) > 0.0) # salinity should always be greater than 0
if first_salinity_values is None:
first_salinity_values = salinity.tolist()
else:
second_salinity_values = salinity.tolist()
assertions(len(first_salinity_values) == len(second_salinity_values))
for idx in range(0,len(first_salinity_values)):
assertions(first_salinity_values[idx]*2.0 == second_salinity_values[idx])
def _create_salinity_data_process_definition(self):
# Salinity: Data Process Definition
#First look to see if it exists and if not, then create it
dpd,_ = self.rrclient.find_resources(restype=RT.DataProcessDefinition, name='ctd_salinity')
if len(dpd) > 0:
return dpd[0]
log.debug("Create data process definition SalinityTransform")
dpd_obj = IonObject(RT.DataProcessDefinition,
name='ctd_salinity',
description='create a salinity data product',
module='ion.processes.data.transforms.ctd.ctd_L2_salinity',
class_name='SalinityTransform',
process_source='SalinityTransform source code here...')
try:
ctd_L2_salinity_dprocdef_id = self.dataprocessclient.create_data_process_definition(dpd_obj)
except Excpetion as ex:
self.fail("failed to create new SalinityTransform data process definition: %s" %ex)
# create a stream definition for the data from the salinity Transform
sal_stream_def_id = self.pubsubclient.create_stream_definition(container=SalinityTransform.outgoing_stream_def, name='Salinity')
self.dataprocessclient.assign_stream_definition_to_data_process_definition(sal_stream_def_id, ctd_L2_salinity_dprocdef_id )
return ctd_L2_salinity_dprocdef_id
def _create_salinity_doubler_data_process_definition(self):
#First look to see if it exists and if not, then create it
dpd,_ = self.rrclient.find_resources(restype=RT.DataProcessDefinition, name='salinity_doubler')
if len(dpd) > 0:
return dpd[0]
# Salinity Doubler: Data Process Definition
log.debug("Create data process definition SalinityDoublerTransform")
dpd_obj = IonObject(RT.DataProcessDefinition,
name='salinity_doubler',
description='create a salinity doubler data product',
module='ion.processes.data.transforms.example_double_salinity',
class_name='SalinityDoubler',
process_source='SalinityDoubler source code here...')
try:
salinity_doubler_dprocdef_id = self.dataprocessclient.create_data_process_definition(dpd_obj)
except Exception as ex:
self.fail("failed to create new SalinityDoubler data process definition: %s" %ex)
# create a stream definition for the data from the salinity Transform
salinity_double_stream_def_id = self.pubsubclient.create_stream_definition(container=SalinityDoubler.outgoing_stream_def, name='SalinityDoubler')
self.dataprocessclient.assign_stream_definition_to_data_process_definition(salinity_double_stream_def_id, salinity_doubler_dprocdef_id )
return salinity_doubler_dprocdef_id
def create_transform_process(self, data_process_definition_id, data_process_input_dp_id):
data_process_definition = self.rrclient.read(data_process_definition_id)
# Find the link between the output Stream Definition resource and the Data Process Definition resource
stream_ids,_ = self.rrclient.find_objects(data_process_definition._id, PRED.hasStreamDefinition, RT.StreamDefinition, id_only=True)
if not stream_ids:
raise Inconsistent("The data process definition %s is missing an association to an output stream definition" % data_process_definition._id )
process_output_stream_def_id = stream_ids[0]
#Concatenate the name of the workflow and data process definition for the name of the data product output
data_process_name = data_process_definition.name
# Create the output data product of the transform
transform_dp_obj = IonObject(RT.DataProduct, name=data_process_name,description=data_process_definition.description)
transform_dp_id = self.dataproductclient.create_data_product(transform_dp_obj, process_output_stream_def_id)
self.dataproductclient.activate_data_product_persistence(data_product_id=transform_dp_id, persist_data=True, persist_metadata=True)
#last one out of the for loop is the output product id
output_data_product_id = transform_dp_id
# Create the transform data process
log.debug("create data_process and start it")
data_process_id = self.dataprocessclient.create_data_process(data_process_definition._id, [data_process_input_dp_id], {'output':transform_dp_id})
self.dataprocessclient.activate_data_process(data_process_id)
#Find the id of the output data stream
stream_ids, _ = self.rrclient.find_objects(transform_dp_id, PRED.hasStream, None, True)
if not stream_ids:
raise Inconsistent("The data process %s is missing an association to an output stream" % data_process_id )
return data_process_id, output_data_product_id
@attr('LOCOINT')
@unittest.skipIf(os.getenv('CEI_LAUNCH_TEST', False),'Not integrated for CEI')
#@unittest.skip("Skipping for debugging ")
def test_SA_transform_components(self):
assertions = self.assertTrue
#The list of data product streams to monitor
data_product_stream_ids = list()
#Create the input data product
ctd_stream_id, ctd_parsed_data_product_id = self._create_ctd_input_stream_and_data_product()
data_product_stream_ids.append(ctd_stream_id)
###
### Setup the first transformation
###
# Salinity: Data Process Definition
ctd_L2_salinity_dprocdef_id = self._create_salinity_data_process_definition()
l2_salinity_all_data_process_id, ctd_l2_salinity_output_dp_id = self.create_transform_process(ctd_L2_salinity_dprocdef_id,ctd_parsed_data_product_id )
## get the stream id for the transform outputs
stream_ids, _ = self.rrclient.find_objects(ctd_l2_salinity_output_dp_id, PRED.hasStream, None, True)
assertions(len(stream_ids) > 0 )
sal_stream_id = stream_ids[0]
data_product_stream_ids.append(sal_stream_id)
###
### Setup the second transformation
###
# Salinity Doubler: Data Process Definition
salinity_doubler_dprocdef_id = self._create_salinity_doubler_data_process_definition()
salinity_double_data_process_id, salinity_doubler_output_dp_id = self.create_transform_process(salinity_doubler_dprocdef_id, ctd_l2_salinity_output_dp_id )
stream_ids, _ = self.rrclient.find_objects(salinity_doubler_output_dp_id, PRED.hasStream, None, True)
assertions(len(stream_ids) > 0 )
sal_dbl_stream_id = stream_ids[0]
data_product_stream_ids.append(sal_dbl_stream_id)
#Start the input stream process
ctd_sim_pid = self._start_simple_input_stream_process(ctd_stream_id)
#Start te output stream listener to monitor and verify messages
results = self._start_output_stream_listener(data_product_stream_ids)
#Stop the transform processes
self.dataprocessclient.deactivate_data_process(salinity_double_data_process_id)
self.dataprocessclient.deactivate_data_process(l2_salinity_all_data_process_id)
# stop the flow parse the messages...
self.process_dispatcher.cancel_process(ctd_sim_pid) # kill the ctd simulator process - that is enough data
#Validate the data from each of the messages along the way
self._validate_messages(results)
@attr('LOCOINT')
@unittest.skipIf(os.getenv('CEI_LAUNCH_TEST', False),'Not integrated for CEI')
#@unittest.skip("Skipping for debugging ")
def test_transform_workflow(self):
assertions = self.assertTrue
# Build the workflow definition
workflow_def_obj = IonObject(RT.WorkflowDefinition, name='Salinity_Test_Workflow',description='tests a workflow of multiple transform data processes')
workflow_data_product_name = 'TEST-Workflow_Output_Product' #Set a specific output product name
#Add a transformation process definition
ctd_L2_salinity_dprocdef_id = self._create_salinity_data_process_definition()
workflow_step_obj = IonObject('DataProcessWorkflowStep', data_process_definition_id=ctd_L2_salinity_dprocdef_id, persist_process_output_data=False) #Don't persist the intermediate data product
workflow_def_obj.workflow_steps.append(workflow_step_obj)
#Add a transformation process definition
salinity_doubler_dprocdef_id = self._create_salinity_doubler_data_process_definition()
workflow_step_obj = IonObject('DataProcessWorkflowStep', data_process_definition_id=salinity_doubler_dprocdef_id, output_data_product_name=workflow_data_product_name)
workflow_def_obj.workflow_steps.append(workflow_step_obj)
#Create it in the resource registry
workflow_def_id = self.workflowclient.create_workflow_definition(workflow_def_obj)
aids = self.rrclient.find_associations(workflow_def_id, PRED.hasDataProcessDefinition)
assertions(len(aids) == 2 )
#The list of data product streams to monitor
data_product_stream_ids = list()
#Create the input data product
ctd_stream_id, ctd_parsed_data_product_id = self._create_ctd_input_stream_and_data_product()
data_product_stream_ids.append(ctd_stream_id)
#Create and start the workflow
workflow_id, workflow_product_id = self.workflowclient.create_data_process_workflow(workflow_def_id, ctd_parsed_data_product_id, timeout=30)
workflow_output_ids,_ = self.rrclient.find_subjects(RT.Workflow, PRED.hasOutputProduct, workflow_product_id, True)
assertions(len(workflow_output_ids) == 1 )
#Verify the output data product name matches what was specified in the workflow definition
workflow_product = self.rrclient.read(workflow_product_id)
assertions(workflow_product.name == workflow_data_product_name)
#Walk the associations to find the appropriate output data streams to validate the messages
workflow_dp_ids,_ = self.rrclient.find_objects(workflow_id, PRED.hasDataProduct, RT.DataProduct, True)
assertions(len(workflow_dp_ids) == 2 )
for dp_id in workflow_dp_ids:
stream_ids, _ = self.rrclient.find_objects(dp_id, PRED.hasStream, None, True)
assertions(len(stream_ids) == 1 )
data_product_stream_ids.append(stream_ids[0])
#Start the input stream process
ctd_sim_pid = self._start_simple_input_stream_process(ctd_stream_id)
#Start the output stream listener to monitor and verify messages
results = self._start_output_stream_listener(data_product_stream_ids)
#Stop the workflow processes
self.workflowclient.terminate_data_process_workflow(workflow_id, False, timeout=15) # Should test true at some point
#Make sure the Workflow object was removed
objs, _ = self.rrclient.find_resources(restype=RT.Workflow)
assertions(len(objs) == 0)
# stop the flow parse the messages...
self.process_dispatcher.cancel_process(ctd_sim_pid) # kill the ctd simulator process - that is enough data
#Validate the data from each of the messages along the way
self._validate_messages(results)
#Cleanup to make sure delete is correct.
self.workflowclient.delete_workflow_definition(workflow_def_id)
workflow_def_ids,_ = self.rrclient.find_resources(restype=RT.WorkflowDefinition)
assertions(len(workflow_def_ids) == 0 )
def _create_google_dt_data_process_definition(self):
#First look to see if it exists and if not, then create it
dpd,_ = self.rrclient.find_resources(restype=RT.DataProcessDefinition, name='google_dt_transform')
if len(dpd) > 0:
return dpd[0]
# Data Process Definition
log.debug("Create data process definition GoogleDtTransform")
dpd_obj = IonObject(RT.DataProcessDefinition,
name='google_dt_transform',
description='Convert data streams to Google DataTables',
module='ion.processes.data.transforms.viz.google_dt',
class_name='VizTransformGoogleDT',
process_source='VizTransformGoogleDT source code here...')
try:
procdef_id = self.dataprocessclient.create_data_process_definition(dpd_obj)
except Exception as ex:
self.fail("failed to create new VizTransformGoogleDT data process definition: %s" %ex)
# create a stream definition for the data from the
stream_def_id = self.pubsubclient.create_stream_definition(container=VizTransformGoogleDT.outgoing_stream_def, name='VizTransformGoogleDT')
self.dataprocessclient.assign_stream_definition_to_data_process_definition(stream_def_id, procdef_id )
return procdef_id
def _validate_google_dt_results(self, results_stream_def, results):
cc = self.container
assertions = self.assertTrue
for g in results:
if isinstance(g,Granule):
tx = TaxyTool.load_from_granule(g)
rdt = RecordDictionaryTool.load_from_granule(g)
#log.warn(tx.pretty_print())
#log.warn(rdt.pretty_print())
gdt_component = rdt['google_dt_components'][0]
assertions(gdt_component['viz_product_type'] == 'google_realtime_dt' )
gdt_description = gdt_component['data_table_description']
gdt_content = gdt_component['data_table_content']
assertions(gdt_description[0][0] == 'time')
assertions(len(gdt_description) > 1)
assertions(len(gdt_content) >= 0)
return
def _create_mpl_graphs_data_process_definition(self):
#First look to see if it exists and if not, then create it
dpd,_ = self.rrclient.find_resources(restype=RT.DataProcessDefinition, name='mpl_graphs_transform')
if len(dpd) > 0:
return dpd[0]
#Data Process Definition
log.debug("Create data process definition MatplotlibGraphsTransform")
dpd_obj = IonObject(RT.DataProcessDefinition,
name='mpl_graphs_transform',
description='Convert data streams to Matplotlib graphs',
module='ion.processes.data.transforms.viz.matplotlib_graphs',
class_name='VizTransformMatplotlibGraphs',
process_source='VizTransformMatplotlibGraphs source code here...')
try:
procdef_id = self.dataprocessclient.create_data_process_definition(dpd_obj)
except Exception as ex:
self.fail("failed to create new VizTransformMatplotlibGraphs data process definition: %s" %ex)
# create a stream definition for the data
stream_def_id = self.pubsubclient.create_stream_definition(container=VizTransformMatplotlibGraphs.outgoing_stream_def, name='VizTransformMatplotlibGraphs')
self.dataprocessclient.assign_stream_definition_to_data_process_definition(stream_def_id, procdef_id )
return procdef_id
def _validate_mpl_graphs_results(self, results_stream_def, results):
cc = self.container
assertions = self.assertTrue
for g in results:
if isinstance(g,Granule):
tx = TaxyTool.load_from_granule(g)
rdt = RecordDictionaryTool.load_from_granule(g)
#log.warn(tx.pretty_print())
#log.warn(rdt.pretty_print())
graphs = rdt['matplotlib_graphs']
for graph in graphs:
assertions(graph['viz_product_type'] == 'matplotlib_graphs' )
# check to see if the list (numpy array) contians actual images
assertions(imghdr.what(graph['image_name'], graph['image_obj']) == 'png')
return
@attr('LOCOINT')
@unittest.skipIf(os.getenv('CEI_LAUNCH_TEST', False),'Not integrated for CEI')
#unittest.skip("Skipping for debugging ")
def test_google_dt_transform_workflow(self):
assertions = self.assertTrue
# Build the workflow definition
workflow_def_obj = IonObject(RT.WorkflowDefinition, name='GoogleDT_Test_Workflow',description='Tests the workflow of converting stream data to Google DT')
#Add a transformation process definition
google_dt_procdef_id = self._create_google_dt_data_process_definition()
workflow_step_obj = IonObject('DataProcessWorkflowStep', data_process_definition_id=google_dt_procdef_id)
workflow_def_obj.workflow_steps.append(workflow_step_obj)
#Create it in the resource registry
workflow_def_id = self.workflowclient.create_workflow_definition(workflow_def_obj)
#The list of data product streams to monitor
data_product_stream_ids = list()
#Create the input data product
ctd_stream_id, ctd_parsed_data_product_id = self._create_ctd_input_stream_and_data_product()
data_product_stream_ids.append(ctd_stream_id)
#Create and start the workflow
workflow_id, workflow_product_id = self.workflowclient.create_data_process_workflow(workflow_def_id, ctd_parsed_data_product_id)
workflow_output_ids,_ = self.rrclient.find_subjects(RT.Workflow, PRED.hasOutputProduct, workflow_product_id, True)
assertions(len(workflow_output_ids) == 1 )
#Walk the associations to find the appropriate output data streams to validate the messages
workflow_dp_ids,_ = self.rrclient.find_objects(workflow_id, PRED.hasDataProduct, RT.DataProduct, True)
assertions(len(workflow_dp_ids) == 1 )
for dp_id in workflow_dp_ids:
stream_ids, _ = self.rrclient.find_objects(dp_id, PRED.hasStream, None, True)
assertions(len(stream_ids) == 1 )
data_product_stream_ids.append(stream_ids[0])
#Start the input stream process
ctd_sim_pid = self._start_simple_input_stream_process(ctd_stream_id)
#Start the output stream listener to monitor and verify messages
results = self._start_output_stream_listener(data_product_stream_ids)
#Stop the workflow processes
self.workflowclient.terminate_data_process_workflow(workflow_id, False) # Should test true at some point
# stop the flow parse the messages...
self.process_dispatcher.cancel_process(ctd_sim_pid) # kill the ctd simulator process - that is enough data
#Validate the data from each of the messages along the way
self._validate_google_dt_results(VizTransformGoogleDT.outgoing_stream_def, results)
#Cleanup to make sure delete is correct.
self.workflowclient.delete_workflow_definition(workflow_def_id)
workflow_def_ids,_ = self.rrclient.find_resources(restype=RT.WorkflowDefinition)
assertions(len(workflow_def_ids) == 0 )
@attr('LOCOINT')
@unittest.skipIf(os.getenv('CEI_LAUNCH_TEST', False),'Not integrated for CEI')
#@unittest.skip("Skipping for debugging ")
def test_mpl_graphs_transform_workflow(self):
assertions = self.assertTrue
# Build the workflow definition
workflow_def_obj = IonObject(RT.WorkflowDefinition, name='Mpl_Graphs_Test_Workflow',description='Tests the workflow of converting stream data to Matplotlib graphs')
#Add a transformation process definition
mpl_graphs_procdef_id = self._create_mpl_graphs_data_process_definition()
workflow_step_obj = IonObject('DataProcessWorkflowStep', data_process_definition_id=mpl_graphs_procdef_id)
workflow_def_obj.workflow_steps.append(workflow_step_obj)
#Create it in the resource registry
workflow_def_id = self.workflowclient.create_workflow_definition(workflow_def_obj)
#The list of data product streams to monitor
data_product_stream_ids = list()
#Create the input data product
ctd_stream_id, ctd_parsed_data_product_id = self._create_ctd_input_stream_and_data_product()
data_product_stream_ids.append(ctd_stream_id)
#Create and start the workflow
workflow_id, workflow_product_id = self.workflowclient.create_data_process_workflow(workflow_def_id, ctd_parsed_data_product_id)
workflow_output_ids,_ = self.rrclient.find_subjects(RT.Workflow, PRED.hasOutputProduct, workflow_product_id, True)
assertions(len(workflow_output_ids) == 1 )
#Walk the associations to find the appropriate output data streams to validate the messages
workflow_dp_ids,_ = self.rrclient.find_objects(workflow_id, PRED.hasDataProduct, RT.DataProduct, True)
assertions(len(workflow_dp_ids) == 1 )
for dp_id in workflow_dp_ids:
stream_ids, _ = self.rrclient.find_objects(dp_id, PRED.hasStream, None, True)
assertions(len(stream_ids) == 1 )
data_product_stream_ids.append(stream_ids[0])
#Start the input stream process
ctd_sim_pid = self._start_sinusoidal_input_stream_process(ctd_stream_id)
#Start the output stream listener to monitor and verify messages
results = self._start_output_stream_listener(data_product_stream_ids)
#Stop the workflow processes
self.workflowclient.terminate_data_process_workflow(workflow_id, False) # Should test true at some point
# stop the flow parse the messages...
self.process_dispatcher.cancel_process(ctd_sim_pid) # kill the ctd simulator process - that is enough data
#Validate the data from each of the messages along the way
self._validate_mpl_graphs_results(VizTransformGoogleDT.outgoing_stream_def, results)
#Cleanup to make sure delete is correct.
self.workflowclient.delete_workflow_definition(workflow_def_id)
workflow_def_ids,_ = self.rrclient.find_resources(restype=RT.WorkflowDefinition)
assertions(len(workflow_def_ids) == 0 )
@attr('LOCOINT')
@unittest.skipIf(os.getenv('CEI_LAUNCH_TEST', False),'Not integrated for CEI')
#@unittest.skip("Skipping for debugging ")
def test_multiple_workflow_instances(self):
assertions = self.assertTrue
# Build the workflow definition
workflow_def_obj = IonObject(RT.WorkflowDefinition, name='Multiple_Test_Workflow',description='Tests the workflow of converting stream data')
#Add a transformation process definition
google_dt_procdef_id = self._create_google_dt_data_process_definition()
workflow_step_obj = IonObject('DataProcessWorkflowStep', data_process_definition_id=google_dt_procdef_id)
workflow_def_obj.workflow_steps.append(workflow_step_obj)
#Create it in the resource registry
workflow_def_id = self.workflowclient.create_workflow_definition(workflow_def_obj)
#The list of data product streams to monitor
data_product_stream_ids = list()
#Create the first input data product
ctd_stream_id1, ctd_parsed_data_product_id1 = self._create_ctd_input_stream_and_data_product('ctd_parsed1')
data_product_stream_ids.append(ctd_stream_id1)
#Create and start the first workflow
workflow_id1, workflow_product_id1 = self.workflowclient.create_data_process_workflow(workflow_def_id, ctd_parsed_data_product_id1)
#Create the second input data product
ctd_stream_id2, ctd_parsed_data_product_id2 = self._create_ctd_input_stream_and_data_product('ctd_parsed2')
data_product_stream_ids.append(ctd_stream_id2)
#Create and start the first workflow
workflow_id2, workflow_product_id2 = self.workflowclient.create_data_process_workflow(workflow_def_id, ctd_parsed_data_product_id2)
#Walk the associations to find the appropriate output data streams to validate the messages
workflow_ids,_ = self.rrclient.find_resources(restype=RT.Workflow)
assertions(len(workflow_ids) == 2 )
#Start the first input stream process
ctd_sim_pid1 = self._start_sinusoidal_input_stream_process(ctd_stream_id1)
#Start the second input stream process
ctd_sim_pid2 = self._start_simple_input_stream_process(ctd_stream_id2)
#Start the output stream listener to monitor a set number of messages being sent through the workflows
results = self._start_output_stream_listener(data_product_stream_ids, message_count_per_stream=5)
# stop the flow of messages...
self.process_dispatcher.cancel_process(ctd_sim_pid1) # kill the ctd simulator process - that is enough data
self.process_dispatcher.cancel_process(ctd_sim_pid2)
#Stop the first workflow processes
self.workflowclient.terminate_data_process_workflow(workflow_id1, False) # Should test true at some point
#Stop the second workflow processes
self.workflowclient.terminate_data_process_workflow(workflow_id2, False) # Should test true at some point
workflow_ids,_ = self.rrclient.find_resources(restype=RT.Workflow)
assertions(len(workflow_ids) == 0 )
#Cleanup to make sure delete is correct.
self.workflowclient.delete_workflow_definition(workflow_def_id)
workflow_def_ids,_ = self.rrclient.find_resources(restype=RT.WorkflowDefinition)
assertions(len(workflow_def_ids) == 0 )
aid_list = self.rrclient.find_associations(workflow_def_id, PRED.hasDataProcessDefinition)
assertions(len(aid_list) == 0 )
class TestObservatoryManagementFullIntegration(IonIntegrationTestCase):
def setUp(self):
self._start_container()
self.container.start_rel_from_url('res/deploy/r2deploy.yml')
self.RR = ResourceRegistryServiceClient()
self.RR2 = EnhancedResourceRegistryClient(self.RR)
self.OMS = ObservatoryManagementServiceClient()
self.org_management_service = OrgManagementServiceClient()
self.IMS = InstrumentManagementServiceClient()
self.dpclient = DataProductManagementServiceClient()
self.pubsubcli = PubsubManagementServiceClient()
self.damsclient = DataAcquisitionManagementServiceClient()
self.dataset_management = DatasetManagementServiceClient()
self.data_retriever = DataRetrieverServiceClient()
self.data_product_management = DataProductManagementServiceClient()
self._load_stage = 0
self._resources = {}
def preload_ooi(self, stage=STAGE_LOAD_ASSETS):
# Preloads OOI up to a given stage
if self._load_stage >= stage:
return
if self._load_stage < STAGE_LOAD_ORGS:
log.info(
"--------------------------------------------------------------------------------------------------------"
)
log.info("Preloading stage: %s (OOIR2 Orgs, users, roles)",
STAGE_LOAD_ORGS)
# load_OOIR2_scenario
self.container.spawn_process("Loader",
"ion.processes.bootstrap.ion_loader",
"IONLoader",
config=dict(
op="load",
scenario="OOIR2",
path="master",
))
self._load_stage = STAGE_LOAD_ORGS
if self._load_stage < STAGE_LOAD_PARAMS:
log.info(
"--------------------------------------------------------------------------------------------------------"
)
log.info("Preloading stage: %s (BASE params, streamdefs)",
STAGE_LOAD_PARAMS)
# load_parameter_scenarios
self.container.spawn_process(
"Loader",
"ion.processes.bootstrap.ion_loader",
"IONLoader",
config=dict(
op="load",
scenario="BETA",
path="master",
categories=
"ParameterFunctions,ParameterDefs,ParameterDictionary,StreamDefinition",
clearcols="owner_id,org_ids",
assets="res/preload/r2_ioc/ooi_assets",
parseooi="True",
))
self._load_stage = STAGE_LOAD_PARAMS
if self._load_stage < STAGE_LOAD_AGENTS:
log.info(
"--------------------------------------------------------------------------------------------------------"
)
log.info("Preloading stage: %s (OOIR2_I agents, model links)",
STAGE_LOAD_AGENTS)
# load_OOIR2_agents
self.container.spawn_process("Loader",
"ion.processes.bootstrap.ion_loader",
"IONLoader",
config=dict(
op="load",
scenario="OOIR2_I",
path="master",
))
self._load_stage = STAGE_LOAD_AGENTS
if self._load_stage < STAGE_LOAD_ASSETS:
log.info(
"--------------------------------------------------------------------------------------------------------"
)
log.info(
"Preloading stage: %s (OOI assets linked to params, agents)",
STAGE_LOAD_ASSETS)
# load_ooi_assets
self.container.spawn_process(
"Loader",
"ion.processes.bootstrap.ion_loader",
"IONLoader",
config=dict(
op="load",
loadooi="True",
path="master",
assets="res/preload/r2_ioc/ooi_assets",
bulk="True",
debug="True",
ooiuntil="9/1/2013",
ooiparams="True",
#excludecategories: DataProduct,DataProductLink,Deployment,Workflow,WorkflowDefinition
))
self._load_stage = STAGE_LOAD_ASSETS
# 'DataProduct,DataProductLink,WorkflowDefinition,ExternalDataProvider,ExternalDatasetModel,ExternalDataset,ExternalDatasetAgent,ExternalDatasetAgentInstance',
@unittest.skip('Work in progress')
def test_observatory(self):
self._load_stage = 0
self._resources = {}
passing = True
self.assertTrue(True)
# LOAD STEP 1
self.preload_ooi(stage=STAGE_LOAD_ORGS)
passing &= self.orguserrole_assertions()
# LOAD STEP 2
self.preload_ooi(stage=STAGE_LOAD_PARAMS)
passing &= self.parameter_assertions()
# LOAD STEP 3
self.preload_ooi(stage=STAGE_LOAD_AGENTS)
passing &= self.agent_assertions()
# LOAD STEP 4
self.preload_ooi(stage=STAGE_LOAD_ASSETS)
# Check OOI preloaded resources to see if they match needs for this test and for correctness
passing &= self.sites_assertions()
passing &= self.device_assertions()
passing &= self.deployment_assertions()
# Extensive tests on select RSN nodes
passing &= self.rsn_node_checks()
# Extensive tests on select RSN instruments
passing &= self.check_rsn_instrument()
passing &= self.check_rsn_instrument_data_product()
# Extensive tests on a glider
#passing &= self.check_glider()
# Extensive tests on a CG assembly
#passing &= self.check_cg_assembly()
# Add a new instrument agent
# Add a new instrument agent instance
# Check DataProducts
# Check Provenance
IonIntegrationTestCase.assertTrue(self, passing)
# -------------------------------------------------------------------------
def orguserrole_assertions(self):
passing = True
passing &= self._check_marine_facility("MF_CGSN")
passing &= self._check_marine_facility("MF_RSN")
passing &= self._check_marine_facility("MF_EA")
return passing
def _check_marine_facility(self, preload_id):
passing = True
log.debug("Checking marine facility %s and associations", preload_id)
mf_obj = self.retrieve_ooi_asset(preload_id)
mf_id = mf_obj._id
self._resources[preload_id] = mf_id
passing &= self.assertEquals(mf_obj.lcstate, LCS.DEPLOYED)
res_list, _ = self.RR.find_objects(subject=mf_id,
predicate=PRED.hasMembership,
id_only=True)
passing &= self.assertTrue(len(res_list) >= 3)
res_list, _ = self.RR.find_objects(subject=mf_id,
predicate=PRED.hasRole,
id_only=False)
passing &= self.assertTrue(len(res_list) >= 5)
passing &= self._check_role_assignments(res_list, "ORG_MANAGER")
passing &= self._check_role_assignments(res_list,
"OBSERVATORY_OPERATOR")
passing &= self._check_role_assignments(res_list,
"INSTRUMENT_OPERATOR")
return passing
def _check_role_assignments(self, role_list, role_name):
passing = True
role_obj = self._find_resource_in_list(role_list, "governance_name",
role_name)
if role_obj:
res_list = self.RR.find_subjects(predicate=PRED.hasRole,
object=role_obj._id,
id_only=True)
passing &= self.assertTrue(len(res_list) >= 1)
return passing
def parameter_assertions(self):
passing = True
pctx_list, _ = self.RR.find_resources_ext(restype=RT.ParameterContext)
passing &= self.assertTrue(len(pctx_list) >= 10)
pdict_list, _ = self.RR.find_resources_ext(
restype=RT.ParameterDictionary)
passing &= self.assertTrue(len(pdict_list) >= 10)
sdef_list, _ = self.RR.find_resources_ext(restype=RT.StreamDefinition)
passing &= self.assertTrue(len(sdef_list) >= 10)
# Verify that a PDict has the appropriate QC parameters defined
pdicts, _ = self.RR.find_resources_ext(restype=RT.ParameterDictionary,
alt_id_ns='PRE',
alt_id='DICT110')
passing &= self.assertTrue(len(pdicts) == 1)
if not pdicts:
return passing
pdict = pdicts[0]
# According to the latest SAF, density should NOT have trend
parameters, _ = self.RR.find_objects(pdict, PRED.hasParameterContext)
names = [i.name for i in parameters if i.name.startswith('density')]
passing &= self.assertTrue('density_trndtst_qc' not in names)
return passing
def agent_assertions(self):
passing = True
# TODO: More tests?
return passing
def sites_assertions(self):
passing = True
observatory_list, _ = self.RR.find_resources_ext(
restype=RT.Observatory)
passing &= self.assertTrue(len(observatory_list) >= 40)
for obs in observatory_list:
passing &= self.assertEquals(obs.lcstate, LCS.DEPLOYED)
platform_site_list, _ = self.RR.find_resources(RT.PlatformSite,
id_only=False)
log.debug('platform sites: %s', [ps.name for ps in platform_site_list])
passing &= self.assertTrue(len(platform_site_list) >= 30)
return passing
def device_assertions(self):
passing = True
platform_device_list, _ = self.RR.find_resources(RT.PlatformDevice,
id_only=False)
passing &= self.assertTrue(len(platform_device_list) >= 30)
for pdev in platform_device_list:
log.debug('platform device: %s', pdev.name)
passing &= self.assertEquals(pdev.lcstate, LCS.PLANNED)
platform_agent_list, _ = self.RR.find_resources(RT.PlatformAgent,
id_only=False)
passing &= self.assertTrue(len(platform_agent_list) >= 2)
for pagent in platform_agent_list:
log.debug('platform agent: %s', pagent.name)
passing &= self.assertEquals(pagent.lcstate, LCS.DEPLOYED)
instrument_agent_list, _ = self.RR.find_resources(RT.InstrumentAgent,
id_only=False)
passing &= self.assertTrue(len(instrument_agent_list) >= 3)
for iagent in instrument_agent_list:
log.debug('instrument agent: %s', iagent.name)
passing &= self.assertEquals(iagent.lcstate, LCS.DEPLOYED)
model_list, _ = self.RR.find_objects(subject=iagent._id,
predicate=PRED.hasModel,
id_only=True)
passing &= self.assertTrue(
len(model_list) >= 1, "IA %s" % iagent.name)
return passing
def deployment_assertions(self):
passing = True
deployment_list, _ = self.RR.find_resources(RT.Deployment,
id_only=False)
passing &= self.assertTrue(len(deployment_list) >= 30)
for deploy in deployment_list:
log.debug('deployment: %s', deploy.name)
passing &= self.assertEquals(deploy.lcstate, LCS.DEPLOYED)
return passing
def rsn_node_checks(self):
"""
Current preload creates:
- PlatformDevice in PLANNED
- PlatformSite in DEPLOYED
- Deployment in DEPLOYED
- Deployment is NOT activated
"""
passing = True
dp_obj = self.retrieve_ooi_asset("CE04OSHY-PN01C_DEP")
passing &= self.assertEquals(dp_obj.lcstate, LCS.DEPLOYED)
passing &= self.assertEquals(dp_obj.availability, AS.AVAILABLE)
log.debug(
'test_observatory retrieve CE04OSHY-PN01C_DEP deployment: %s',
dp_obj)
# Check existing RSN node CE04OSHY-LV01C Deployment (PLANNED lcstate)
CE04OSHY_LV01C_deployment = self.retrieve_ooi_asset(
'CE04OSHY-LV01C_DEP')
passing &= self.assertEquals(CE04OSHY_LV01C_deployment.lcstate,
LCS.DEPLOYED)
passing &= self.assertEquals(CE04OSHY_LV01C_deployment.availability,
AS.AVAILABLE)
#self.dump_deployment(CE04OSHY_LV01C_deployment._id)
log.debug(
'test_observatory retrieve RSN node CE04OSHY-LV01C Deployment: %s',
CE04OSHY_LV01C_deployment)
CE04OSHY_LV01C_device = self.retrieve_ooi_asset('CE04OSHY-LV01C_PD')
# Set CE04OSHY-LV01C device to DEVELOPED state
passing &= self.transition_lcs_then_verify(
resource_id=CE04OSHY_LV01C_device._id,
new_lcs_state=LCE.DEVELOP,
verify=LCS.DEVELOPED)
# Set CE04OSHY-LV01C device to INTEGRATED state
passing &= self.transition_lcs_then_verify(
resource_id=CE04OSHY_LV01C_device._id,
new_lcs_state=LCE.INTEGRATE,
verify=LCS.INTEGRATED)
# Set CE04OSHY-LV01C device to DEPLOYED state
passing &= self.transition_lcs_then_verify(
resource_id=CE04OSHY_LV01C_device._id,
new_lcs_state=LCE.DEPLOY,
verify=LCS.DEPLOYED)
# Set CE04OSHY-LV01C Deployment to DEPLOYED state
# NOTE: Deployments are created in DEPLOYED state, currently
#self.transition_lcs_then_verify(resource_id=CE04OSHY_LV01C_deployment._id, new_lcs_state=LCE.DEPLOY, verify='DEPLOYED')
# Activate Deployment for CE04OSHY-LV01C
self.OMS.activate_deployment(CE04OSHY_LV01C_deployment._id)
log.debug(
'--------- activate_deployment CE04OSHY_LV01C_deployment -------------- '
)
self.dump_deployment(CE04OSHY_LV01C_deployment._id)
passing &= self.validate_deployment_activated(
CE04OSHY_LV01C_deployment._id)
# (optional) Start CE04OSHY-LV01C platform agent with simulator
# NOTE: DataProduct is generated in DEPLOYED state
# # Set DataProduct for CE04OSHY-LV01C platform to DEPLOYED state
# output_data_product_ids, assns =self.RR.find_objects(subject=CE04OSHY_LV01C_device._id, predicate=PRED.hasOutputProduct, id_only=True)
# if output_data_product_ids:
# #self.assertEquals(len(child_devs), 3)
# for output_data_product_id in output_data_product_ids:
# log.debug('DataProduct for CE04OSHY-LV01C platform: %s', output_data_product_id)
# self.transition_lcs_then_verify(resource_id=output_data_product_id, new_lcs_state=LCE.DEPLOY, verify='DEPLOYED')
# Check events for CE04OSHY-LV01C platform
# Check existing CE04OSBP-LJ01C Deployment (PLANNED lcstate)
# dp_list, _ = self.RR.find_resources_ext(alt_id_ns="PRE", alt_id="CE04OSBP-LJ01C_DEP")
# self.assertEquals(len(dp_list), 1)
# CE04OSHY_LV01C_deployment = dp_list[0]
# self.assertEquals(CE04OSHY_LV01C_deployment.lcstate, 'PLANNED')
# log.debug('test_observatory retrieve RSN node CE04OSBP-LJ01C Deployment: %s', CE04OSHY_LV01C_deployment)
# Set CE04OSBP-LJ01C Deployment to DEPLOYED state
# Update description and other attributes for CE04OSBP-LJ01C device resource
# Create attachment (JPG image) for CE04OSBP-LJ01C device resource
# Activate Deployment for CE04OSBP-LJ01C
# (optional) Add/register CE04OSBP-LJ01C platform agent to parent agent
# (optional) Start CE04OSBP-LJ01C platform agent
return passing
def check_rsn_instrument(self):
"""
Check existing RSN instrument CE04OSBP-LJ01C-06-CTDBPO108 Deployment (PLANNED lcstate)
Current preload creates:
- InstrumentDevice in PLANNED
- InstrumentSite in DEPLOYED
- Deployment in DEPLOYED
- Deployment is activated
"""
passing = True
CE04OSBP_LJ01C_06_CTDBPO108_deploy = self.retrieve_ooi_asset(
'CE04OSBP-LJ01C-06-CTDBPO108_DEP')
self.dump_deployment(CE04OSBP_LJ01C_06_CTDBPO108_deploy._id)
#passing &= self.assertEquals(CE04OSBP_LJ01C_06_CTDBPO108_deploy.lcstate, 'PLANNED')
# Set CE04OSBP-LJ01C-06-CTDBPO108 device to DEVELOPED state
CE04OSBP_LJ01C_06_CTDBPO108_device = self.retrieve_ooi_asset(
'CE04OSBP-LJ01C-06-CTDBPO108_ID')
passing &= self.transition_lcs_then_verify(
resource_id=CE04OSBP_LJ01C_06_CTDBPO108_device._id,
new_lcs_state=LCE.DEVELOP,
verify='DEVELOPED')
# Set CE04OSBP-LJ01C-06-CTDBPO108 device to INTEGRATED state
passing &= self.transition_lcs_then_verify(
resource_id=CE04OSBP_LJ01C_06_CTDBPO108_device._id,
new_lcs_state=LCE.INTEGRATE,
verify='INTEGRATED')
# Set CE04OSBP-LJ01C-06-CTDBPO108 device to DEPLOYED state
passing &= self.transition_lcs_then_verify(
resource_id=CE04OSBP_LJ01C_06_CTDBPO108_device._id,
new_lcs_state=LCE.DEPLOY,
verify='DEPLOYED')
# Set CE04OSBP-LJ01C-06-CTDBPO108 Deployment to DEPLOYED state
#self.transition_lcs_then_verify(resource_id=CE04OSBP_LJ01C_06_CTDBPO108_deploy._id, new_lcs_state=LCE.DEPLOY, verify='DEPLOYED')
# Activate Deployment for CE04OSBP-LJ01C-06-CTDBPO108 instrument
log.debug(
'--------- activate_deployment CE04OSBP-LJ01C-06-CTDBPO108 deployment -------------- '
)
self.OMS.activate_deployment(CE04OSBP_LJ01C_06_CTDBPO108_deploy._id)
passing &= self.validate_deployment_activated(
CE04OSBP_LJ01C_06_CTDBPO108_deploy._id)
# (optional) Add/register CE04OSBP-LJ01C-06-CTDBPO108 instrument agent to parent agent
# (optional) Start CE04OSBP-LJ01C-06-CTDBPO108 instrument agent with simulator
# Set all DataProducts for CE04OSBP-LJ01C-06-CTDBPO108 to DEPLOYED state
# (optional) Create a substitute Deployment for site CE04OSBP-LJ01C-06-CTDBPO108 with a comparable device
CE04OSBP_LJ01C_06_CTDBPO108_isite = self.retrieve_ooi_asset(
'CE04OSBP-LJ01C-06-CTDBPO108')
## create device here: retrieve CTD Mooring on Mooring Riser 001 - similiar?
GP03FLMB_RI001_10_CTDMOG999_ID_idevice = self.retrieve_ooi_asset(
'GP03FLMB-RI001-10-CTDMOG999_ID')
deploy_id_2 = self.create_basic_deployment(
name='CE04OSBP-LJ01C-06-CTDBPO108_DEP2',
description=
'substitute Deployment for site CE04OSBP-LJ01C-06-CTDBPO108 with a comparable device'
)
self.OMS.assign_device_to_deployment(
instrument_device_id=GP03FLMB_RI001_10_CTDMOG999_ID_idevice._id,
deployment_id=deploy_id_2)
self.OMS.assign_site_to_deployment(
instrument_site_id=CE04OSBP_LJ01C_06_CTDBPO108_isite._id,
deployment_id=deploy_id_2)
self.dump_deployment(deploy_id_2)
# (optional) Activate this second deployment - check first deployment is deactivated
self.OMS.deactivate_deployment(CE04OSBP_LJ01C_06_CTDBPO108_deploy._id)
passing &= self.validate_deployment_deactivated(
CE04OSBP_LJ01C_06_CTDBPO108_deploy._id)
# log.debug('Activate deployment deploy_id_2')
# self.get_deployment_ids(deploy_id_2)
# self.dump_deployment(deploy_id_2, "deploy_id_2")
# self.OMS.activate_deployment(deploy_id_2)
# passing &= self.validate_deployment_deactivated(CE04OSBP_LJ01C_06_CTDBPO108_deploy._id)
#
# # (optional) Set first CE04OSBP-LJ01C-06-CTDBPO108 Deployment to INTEGRATED state
# passing &= self.transition_lcs_then_verify(resource_id=CE04OSBP_LJ01C_06_CTDBPO108_deploy._id, new_lcs_state=LCE.INTEGRATE, verify='INTEGRATED')
#
# # Set first CE04OSBP-LJ01C-06-CTDBPO108 device to INTEGRATED state
# passing &= self.transition_lcs_then_verify(resource_id=CE04OSBP_LJ01C_06_CTDBPO108_device._id, new_lcs_state=LCE.INTEGRATE, verify='INTEGRATED')
#
#
# # (optional) Create a third Deployment for site CE04OSBP-LJ01C-06-CTDBPO108 with a same device from first deployment
# deploy_id_3 = self.create_basic_deployment(name='CE04OSBP-LJ01C-06-CTDBPO108_DEP3', description='substitute Deployment for site CE04OSBP-LJ01C-06-CTDBPO108 with same device as first')
# self.IMS.deploy_instrument_device(instrument_device_id=GP03FLMB_RI001_10_CTDMOG999_ID_idevice._id, deployment_id=deploy_id_3)
# self.OMS.deploy_instrument_site(instrument_site_id=CE04OSBP_LJ01C_06_CTDBPO108_isite._id, deployment_id=deploy_id_3)
# self.dump_deployment(deploy_id_3)
#
#
# # Set first CE04OSBP-LJ01C-06-CTDBPO108 device to DEPLOYED state
# passing &= self.transition_lcs_then_verify(resource_id=CE04OSBP_LJ01C_06_CTDBPO108_device._id, new_lcs_state=LCE.DEPLOY, verify='DEPLOYED')
#
# # (optional) Activate this third deployment - check second deployment is deactivated
# log.debug('Activate deployment deploy_id_3')
# self.dump_deployment(deploy_id_3)
# self.OMS.activate_deployment(deploy_id_3)
# #todo: check second deployment is deactivated
return passing
def check_data_product_reference(self, reference_designator, output=[]):
passing = True
data_product_ids, _ = self.RR.find_resources_ext(
alt_id_ns='PRE',
alt_id='%s_DPI1' % reference_designator,
id_only=True) # Assuming DPI1 is parsed
passing &= self.assertEquals(len(data_product_ids), 1)
if not data_product_ids:
return passing
# Let's go ahead and activate it
data_product_id = data_product_ids[0]
self.dpclient.activate_data_product_persistence(data_product_id)
self.addCleanup(self.dpclient.suspend_data_product_persistence,
data_product_id)
dataset_ids, _ = self.RR.find_objects(data_product_id,
PRED.hasDataset,
id_only=True)
passing &= self.assertEquals(len(dataset_ids), 1)
if not dataset_ids:
return passing
dataset_id = dataset_ids[0]
stream_def_ids, _ = self.RR.find_objects(data_product_id,
PRED.hasStreamDefinition,
id_only=True)
passing &= self.assertEquals(len(dataset_ids), 1)
if not stream_def_ids:
return passing
stream_def_id = stream_def_ids[0]
output.append((data_product_id, stream_def_id, dataset_id))
return passing
def check_tempsf_instrument_data_product(self, reference_designator):
passing = True
info_list = []
passing &= self.check_data_product_reference(reference_designator,
info_list)
if not passing: return passing
data_product_id, stream_def_id, dataset_id = info_list.pop()
now = time.time()
ntp_now = now + 2208988800
rdt = RecordDictionaryTool(stream_definition_id=stream_def_id)
rdt['time'] = [ntp_now]
rdt['temperature'] = [[
25.3884, 26.9384, 24.3394, 23.3401, 22.9832, 29.4434, 26.9873,
15.2883, 16.3374, 14.5883, 15.7253, 18.4383, 15.3488, 17.2993,
10.2111, 11.5993, 10.9345, 9.4444, 9.9876, 10.9834, 11.0098,
5.3456, 4.2994, 4.3009
]]
dataset_monitor = DatasetMonitor(dataset_id)
self.addCleanup(dataset_monitor.stop)
ParameterHelper.publish_rdt_to_data_product(data_product_id, rdt)
passing &= self.assertTrue(dataset_monitor.wait())
if not passing: return passing
granule = self.data_retriever.retrieve(dataset_id)
rdt = RecordDictionaryTool.load_from_granule(granule)
passing &= self.assert_array_almost_equal(rdt['time'], [ntp_now])
passing &= self.assert_array_almost_equal(rdt['temperature'], [[
25.3884, 26.9384, 24.3394, 23.3401, 22.9832, 29.4434, 26.9873,
15.2883, 16.3374, 14.5883, 15.7253, 18.4383, 15.3488, 17.2993,
10.2111, 11.5993, 10.9345, 9.4444, 9.9876, 10.9834, 11.0098,
5.3456, 4.2994, 4.3009
]])
return passing
def check_trhph_instrument_data_products(self, reference_designator):
passing = True
info_list = []
passing &= self.check_data_product_reference(reference_designator,
info_list)
if not passing:
return passing
data_product_id, stream_def_id, dataset_id = info_list.pop()
pdict = self.RR2.find_parameter_dictionary_of_stream_definition_using_has_parameter_dictionary(
stream_def_id)
passing &= self.assertEquals(pdict.name, 'trhph_sample')
rdt = RecordDictionaryTool(stream_definition_id=stream_def_id)
# calibration constants
a = 1.98e-9
b = -2.45e-6
c = 9.28e-4
d = -0.0888
e = 0.731
V_s = 1.506
V_c = 0.
T = 11.8
r1 = 0.906
r2 = 4.095
r3 = 4.095
ORP_V = 1.806
Cl = np.nan
offset = 2008
gain = 4.0
# Normally this would be 50 per the DPS but the precision is %4.0f which truncates the values to the nearest 1...
ORP = ((ORP_V * 1000.) - offset) / gain
ntp_now = time.time() + 2208988800
rdt['cc_a'] = [a]
rdt['cc_b'] = [b]
rdt['cc_c'] = [c]
rdt['cc_d'] = [d]
rdt['cc_e'] = [e]
rdt['ref_temp_volts'] = [V_s]
rdt['resistivity_temp_volts'] = [V_c]
rdt['eh_sensor'] = [ORP_V]
rdt['resistivity_5'] = [r1]
rdt['resistivity_x1'] = [r2]
rdt['resistivity_x5'] = [r3]
rdt['cc_offset'] = [offset]
rdt['cc_gain'] = [gain]
rdt['time'] = [ntp_now]
passing &= self.assert_array_almost_equal(rdt['vent_fluid_temperaure'],
[T], 2)
passing &= self.assert_array_almost_equal(
rdt['vent_fluid_chloride_conc'], [Cl], 4)
passing &= self.assert_array_almost_equal(rdt['vent_fluid_orp'], [ORP],
4)
dataset_monitor = DatasetMonitor(dataset_id)
self.addCleanup(dataset_monitor.stop)
ParameterHelper.publish_rdt_to_data_product(data_product_id, rdt)
passing &= self.assertTrue(dataset_monitor.wait())
if not passing: return passing
granule = self.data_retriever.retrieve(dataset_id)
rdt = RecordDictionaryTool.load_from_granule(granule)
passing &= self.assert_array_almost_equal(rdt['vent_fluid_temperaure'],
[T], 2)
passing &= self.assert_array_almost_equal(
rdt['vent_fluid_chloride_conc'], [Cl], 4)
passing &= self.assert_array_almost_equal(rdt['vent_fluid_orp'], [ORP],
4)
return passing
def check_vel3d_instrument_data_products(self, reference_designator):
passing = True
info_list = []
passing &= self.check_data_product_reference(reference_designator,
info_list)
if not passing:
return passing
data_product_id, stream_def_id, dataset_id = info_list.pop()
pdict = self.RR2.find_parameter_dictionary_of_stream_definition_using_has_parameter_dictionary(
stream_def_id)
self.assertEquals(pdict.name, 'vel3d_b_sample')
rdt = RecordDictionaryTool(stream_definition_id=stream_def_id)
lat = 14.6846
lon = -51.044
ts = np.array([
3319563600, 3319567200, 3319570800, 3319574400, 3319578000,
3319581600, 3319585200, 3319588800, 3319592400, 3319596000
],
dtype=np.float)
ve = np.array([-3.2, 0.1, 0., 2.3, -0.1, 5.6, 5.1, 5.8, 8.8, 10.3])
vn = np.array([18.2, 9.9, 12., 6.6, 7.4, 3.4, -2.6, 0.2, -1.5, 4.1])
vu = np.array([-1.1, -0.6, -1.4, -2, -1.7, -2, 1.3, -1.6, -1.1, -4.5])
ve_expected = np.array([
-0.085136, -0.028752, -0.036007, 0.002136, -0.023158, 0.043218,
0.056451, 0.054727, 0.088446, 0.085952
])
vn_expected = np.array([
0.164012, 0.094738, 0.114471, 0.06986, 0.07029, 0.049237,
-0.009499, 0.019311, 0.012096, 0.070017
])
vu_expected = np.array([
-0.011, -0.006, -0.014, -0.02, -0.017, -0.02, 0.013, -0.016,
-0.011, -0.045
])
rdt['time'] = ts
rdt['lat'] = [lat] * 10
rdt['lon'] = [lon] * 10
rdt['turbulent_velocity_east'] = ve
rdt['turbulent_velocity_north'] = vn
rdt['turbulent_velocity_up'] = vu
passing &= self.assert_array_almost_equal(
rdt['eastward_turbulent_velocity'], ve_expected)
passing &= self.assert_array_almost_equal(
rdt['northward_turbulent_velocity'], vn_expected)
passing &= self.assert_array_almost_equal(
rdt['upward_turbulent_velocity'], vu_expected)
dataset_monitor = DatasetMonitor(dataset_id)
self.addCleanup(dataset_monitor.stop)
ParameterHelper.publish_rdt_to_data_product(data_product_id, rdt)
passing &= self.assertTrue(dataset_monitor.wait())
if not passing: return passing
granule = self.data_retriever.retrieve(dataset_id)
rdt = RecordDictionaryTool.load_from_granule(granule)
passing &= self.assert_array_almost_equal(
rdt['eastward_turbulent_velocity'], ve_expected)
passing &= self.assert_array_almost_equal(
rdt['northward_turbulent_velocity'], vn_expected)
passing &= self.assert_array_almost_equal(
rdt['upward_turbulent_velocity'], vu_expected)
return passing
def check_presta_instrument_data_products(self, reference_designator):
# Check the parsed data product make sure it's got everything it needs and can be published persisted etc.
# Absolute Pressure (SFLPRES_L0) is what comes off the instrumnet, SFLPRES_L1 is a pfunc
# Let's go ahead and publish some fake data!!!
# According to https://alfresco.oceanobservatories.org/alfresco/d/d/workspace/SpacesStore/63e16865-9d9e-4b11-b0b3-d5658faa5080/1341-00230_Data_Product_Spec_SFLPRES_OOI.pdf
# Appendix A. Example 1.
# p_psia_tide = 14.8670
# the tide should be 10.2504
passing = True
info_list = []
passing &= self.check_data_product_reference(reference_designator,
info_list)
if not passing:
return passing
data_product_id, stream_def_id, dataset_id = info_list.pop()
now = time.time()
ntp_now = now + 2208988800.
rdt = RecordDictionaryTool(stream_definition_id=stream_def_id)
rdt['time'] = [ntp_now]
rdt['absolute_pressure'] = [14.8670]
passing &= self.assert_array_almost_equal(rdt['seafloor_pressure'],
[10.2504], 4)
dataset_monitor = DatasetMonitor(dataset_id)
self.addCleanup(dataset_monitor.stop)
ParameterHelper.publish_rdt_to_data_product(data_product_id, rdt)
self.assertTrue(
dataset_monitor.wait()) # Bumped to 20 to keep buildbot happy
if not passing: return passing
granule = self.data_retriever.retrieve(dataset_id)
rdt = RecordDictionaryTool.load_from_granule(granule)
passing &= self.assert_array_almost_equal(rdt['time'], [ntp_now])
passing &= self.assert_array_almost_equal(rdt['seafloor_pressure'],
[10.2504], 4)
passing &= self.assert_array_almost_equal(rdt['absolute_pressure'],
[14.8670], 4)
return passing
def check_rsn_instrument_data_product(self):
passing = True
# for RS03AXBS-MJ03A-06-PRESTA301 (PREST-A) there are a few listed data products
# Parsed, Engineering
# SFLPRES-0 SFLPRES-1
# Check for the two data products and make sure they have the proper parameters
# SFLPRES-0 should
data_products, _ = self.RR.find_resources_ext(
alt_id_ns='PRE',
alt_id='RS03AXBS-MJ03A-06-PRESTA301_SFLPRES_L0_DPID',
id_only=True)
passing &= self.assertTrue(len(data_products) == 1)
if not data_products:
return passing
data_product_id = data_products[0]
stream_defs, _ = self.RR.find_objects(data_product_id,
PRED.hasStreamDefinition,
id_only=False)
passing &= self.assertTrue(len(stream_defs) == 1)
if not stream_defs:
return passing
# Assert that the stream definition has the correct reference designator
stream_def = stream_defs[0]
passing &= self.assertEquals(
stream_def.stream_configuration['reference_designator'],
'RS03AXBS-MJ03A-06-PRESTA301')
# Get the pdict and make sure that the parameters corresponding to the available fields
# begin with the appropriate data product identifier
pdict_ids, _ = self.RR.find_objects(stream_def,
PRED.hasParameterDictionary,
id_only=True)
passing &= self.assertEquals(len(pdict_ids), 1)
if not pdict_ids:
return passing
pdict_id = pdict_ids[0]
pdict = DatasetManagementService.get_parameter_dictionary(pdict_id)
available_params = [
pdict.get_context(i) for i in pdict.keys()
if i in stream_def.available_fields
]
for p in available_params:
if p.name == 'time': # Ignore the domain parameter
continue
passing &= self.assertTrue(p.ooi_short_name.startswith('SFLPRES'))
passing &= self.check_presta_instrument_data_products(
'RS01SLBS-MJ01A-06-PRESTA101')
passing &= self.check_vel3d_instrument_data_products(
'RS01SLBS-MJ01A-12-VEL3DB101')
passing &= self.check_presta_instrument_data_products(
'RS03AXBS-MJ03A-06-PRESTA301')
passing &= self.check_vel3d_instrument_data_products(
'RS03AXBS-MJ03A-12-VEL3DB301')
passing &= self.check_tempsf_instrument_data_product(
'RS03ASHS-MJ03B-07-TMPSFA301')
passing &= self.check_vel3d_instrument_data_products(
'RS03INT2-MJ03D-12-VEL3DB304')
passing &= self.check_trhph_instrument_data_products(
'RS03INT1-MJ03C-10-TRHPHA301')
self.data_product_management.activate_data_product_persistence(
data_product_id)
dataset_id = self.RR2.find_dataset_id_of_data_product_using_has_dataset(
data_product_id)
granule = self.data_retriever.retrieve(dataset_id)
rdt = RecordDictionaryTool.load_from_granule(granule)
self.assert_array_almost_equal(rdt['seafloor_pressure'], [10.2504], 4)
self.assert_array_almost_equal(rdt['absolute_pressure'], [14.8670], 4)
self.data_product_management.suspend_data_product_persistence(
data_product_id) # Should do nothing and not raise anything
return passing
def check_glider(self):
'''
# Check that glider GP05MOAS-GL001 assembly is defined by OOI preload (3 instruments)
'''
passing = True
GP05MOAS_GL001_device = self.retrieve_ooi_asset('GP05MOAS-GL001_PD')
child_devs, assns = self.RR.find_objects(
subject=GP05MOAS_GL001_device._id,
predicate=PRED.hasDevice,
id_only=True)
passing &= self.assertEquals(len(child_devs), 3)
# Set GP05MOAS-GL001 Deployment to DEPLOYED
GP05MOAS_GL001_deploy = self.retrieve_ooi_asset('GP05MOAS-GL001_DEP')
passing &= self.transition_lcs_then_verify(
resource_id=GP05MOAS_GL001_deploy._id,
new_lcs_state=LCE.DEPLOY,
verify='DEPLOYED')
# Activate Deployment for GP05MOAS-GL001
#self.OMS.activate_deployment(GP05MOAS_GL001_deploy._id)
# Deactivate Deployment for GP05MOAS-GL001
#self.OMS.deactivate_deployment(GP05MOAS_GL001_deploy._id)
# Create a new Deployment resource X without any assignment
x_deploy_id = self.create_basic_deployment(
name='X_Deployment',
description='new Deployment resource X without any assignment')
# Assign Deployment X to site GP05MOAS-GL001
GP05MOAS_GL001_psite = self.retrieve_ooi_asset('GP05MOAS-GL001')
self.OMS.assign_site_to_deployment(GP05MOAS_GL001_psite._id,
x_deploy_id)
# Assign Deployment X to first device for GP05MOAS-GL001
GP05MOAS_GL001_device = self.retrieve_ooi_asset('GP05MOAS-GL001_PD')
self.OMS.assign_device_to_deployment(GP05MOAS_GL001_device._id,
x_deploy_id)
# Set GP05MOAS-GL001 Deployment to PLANNED state
#self.transition_lcs_then_verify(resource_id=x_deploy_id, new_lcs_state=LCE.PLAN, verify='PLANNED')
# ??? already in planned
# Set second GP05MOAS-GL001 Deployment to DEPLOYED
passing &= self.transition_lcs_then_verify(resource_id=x_deploy_id,
new_lcs_state=LCE.DEPLOY,
verify='DEPLOYED')
self.dump_deployment(x_deploy_id)
# Activate second Deployment for GP05MOAS-GL001
#self.OMS.activate_deployment(x_deploy_id)
# Deactivate second Deployment for GP05MOAS-GL001
#self.OMS.deactivate_deployment(x_deploy_id)
return passing
def check_cg_assembly(self):
passing = True
# Set several CE01ISSM-RI002-* instrument devices to DEVELOPED state
# Assemble several CE01ISSM-RI002-* instruments to a CG CE01ISSM-RI002 component platform
# Set several CE01ISSM-RI002-* instrument devices to INTEGRATED state
# Assemble CE01ISSM-RI002 platform to CG CE01ISSM-LM001 station platform
# Set CE01ISSM-RI002 component device to INTEGRATED state
# Set CE01ISSM-LM001 station device to INTEGRATED state
# Set CE01ISSM-LM001 station device to DEPLOYED state (children maybe too?)
# Set CE01ISSM-LM001 Deployment to DEPLOYED
# Activate CE01ISSM-LM001 platform assembly deployment
# Dectivate CE01ISSM-LM001 platform assembly deployment
# Set CE01ISSM-LM001 Deployment to INTEGRATED state
# Set CE01ISSM-LM001 station device to INTEGRATED state
# Set CE01ISSM-RI002 component device to INTEGRATED state
# Set CE01ISSM-RI002 component device to INTEGRATED state
# Disassemble CE01ISSM-RI002 platform from CG CE01ISSM-LM001 station platform
# Disassemble all CE01ISSM-RI002-* instruments from a CG CE01ISSM-RI002 component platform
# Retire instrument one for CE01ISSM-RI002-*
# Retire device one for CE01ISSM-RI002
# Retire device one for CE01ISSM-LM001
return passing
# -------------------------------------------------------------------------
def retrieve_ooi_asset(self, alt_id='', namespace='PRE'):
dp_list, _ = self.RR.find_resources_ext(alt_id_ns=namespace,
alt_id=alt_id)
self.assertEquals(len(dp_list), 1)
return dp_list[0]
def transition_lcs_then_verify(self, resource_id, new_lcs_state, verify):
ret = self.RR2.advance_lcs(resource_id, new_lcs_state)
resource_obj = self.RR.read(resource_id)
return self.assertEquals(resource_obj.lcstate, verify)
def create_basic_deployment(self, name='', description=''):
start = IonTime(datetime.datetime(2013, 1, 1))
end = IonTime(datetime.datetime(2014, 1, 1))
temporal_bounds = IonObject(OT.TemporalBounds,
name='planned',
start_datetime=start.to_string(),
end_datetime=end.to_string())
deployment_obj = IonObject(RT.Deployment,
name=name,
description=description,
context=IonObject(
OT.CabledNodeDeploymentContext),
constraint_list=[temporal_bounds])
return self.OMS.create_deployment(deployment_obj)
def validate_deployment_activated(self, deployment_id=''):
site_id, device_id = self.get_deployment_ids(deployment_id)
assocs = self.RR.find_associations(subject=site_id,
predicate=PRED.hasDevice,
object=device_id)
return self.assertEquals(len(assocs), 1)
def validate_deployment_deactivated(self, deployment_id=''):
site_id, device_id = self.get_deployment_ids(deployment_id)
assocs = self.RR.find_associations(subject=site_id,
predicate=PRED.hasDevice,
object=device_id)
return self.assertEquals(len(assocs), 0)
def dump_deployment(self, deployment_id='', name=""):
#site_id, device_id = self.get_deployment_ids(deployment_id)
resource_list, _ = self.RR.find_subjects(predicate=PRED.hasDeployment,
object=deployment_id,
id_only=True)
resource_list.append(deployment_id)
resources = self.RR.read_mult(resource_list)
log.debug('--------- dump_deployment %s summary---------------',
name)
for resource in resources:
log.debug('%s: %s (%s)', resource._get_type(), resource.name,
resource._id)
log.debug('--------- dump_deployment %s full dump ---------------',
name)
for resource in resources:
log.debug('resource: %s ', resource)
log.debug('--------- dump_deployment %s end ---------------', name)
#assocs = self.container.resource_registry.find_assoctiations(anyside=deployment_id)
# assocs = Container.instance.resource_registry.find_assoctiations(anyside=deployment_id)
# log.debug('--------- dump_deployment ---------------')
# for assoc in assocs:
# log.debug('SUBJECT: %s PREDICATE: %s OBJET: %s', assoc.s, assoc.p, assoc.o)
# log.debug('--------- dump_deployment end ---------------')
def get_deployment_ids(self, deployment_id=''):
devices = []
sites = []
idevice_list, _ = self.RR.find_subjects(RT.InstrumentDevice,
PRED.hasDeployment,
deployment_id,
id_only=True)
pdevice_list, _ = self.RR.find_subjects(RT.PlatformDevice,
PRED.hasDeployment,
deployment_id,
id_only=True)
devices = idevice_list + pdevice_list
self.assertEquals(1, len(devices))
isite_list, _ = self.RR.find_subjects(RT.InstrumentSite,
PRED.hasDeployment,
deployment_id,
id_only=True)
psite_list, _ = self.RR.find_subjects(RT.PlatformSite,
PRED.hasDeployment,
deployment_id,
id_only=True)
sites = isite_list + psite_list
self.assertEquals(1, len(sites))
return sites[0], devices[0]
def _find_resource_in_list(self,
res_list,
attr,
attr_val,
assert_found=True):
for res in res_list:
v = getattr(res, attr, None)
if v == attr_val:
return res
if assert_found:
self.assertTrue(
False,
"Attribute %s value %s not found in list" % (attr, attr_val))
return None
# -------------------------------------------------------------------------
def _get_caller(self):
s = inspect.stack()
return "%s:%s" % (s[2][1], s[2][2])
@assertion_wrapper
def assert_array_almost_equal(self, *args, **kwargs):
np.testing.assert_array_almost_equal(*args, **kwargs)
@assertion_wrapper
def assertEquals(self, *args, **kwargs):
IonIntegrationTestCase.assertEquals(self, *args, **kwargs)
@assertion_wrapper
def assertTrue(self, *args, **kwargs):
IonIntegrationTestCase.assertTrue(self, *args, **kwargs)
class TestWorkflowManagementIntegration(IonIntegrationTestCase):
def setUp(self):
# Start container
self._start_container()
self.container.start_rel_from_url('res/deploy/r2deploy.yml')
# Now create client to DataProductManagementService
self.rrclient = ResourceRegistryServiceClient(node=self.container.node)
self.damsclient = DataAcquisitionManagementServiceClient(
node=self.container.node)
self.pubsubclient = PubsubManagementServiceClient(
node=self.container.node)
self.ingestclient = IngestionManagementServiceClient(
node=self.container.node)
self.imsclient = InstrumentManagementServiceClient(
node=self.container.node)
self.dataproductclient = DataProductManagementServiceClient(
node=self.container.node)
self.dataprocessclient = DataProcessManagementServiceClient(
node=self.container.node)
self.datasetclient = DatasetManagementServiceClient(
node=self.container.node)
self.workflowclient = WorkflowManagementServiceClient(
node=self.container.node)
self.process_dispatcher = ProcessDispatcherServiceClient(
node=self.container.node)
self.ctd_stream_def = SBE37_CDM_stream_definition()
def _create_ctd_input_stream_and_data_product(
self, data_product_name='ctd_parsed'):
cc = self.container
assertions = self.assertTrue
#-------------------------------
# Create CTD Parsed as the initial data product
#-------------------------------
# create a stream definition for the data from the ctd simulator
ctd_stream_def = SBE37_CDM_stream_definition()
ctd_stream_def_id = self.pubsubclient.create_stream_definition(
container=self.ctd_stream_def, name='Simulated CTD data')
log.debug('Creating new CDM data product with a stream definition')
dp_obj = IonObject(RT.DataProduct,
name=data_product_name,
description='ctd stream test')
try:
ctd_parsed_data_product_id = self.dataproductclient.create_data_product(
dp_obj, ctd_stream_def_id)
except Exception as ex:
self.fail("failed to create new data product: %s" % ex)
log.debug('new ctd_parsed_data_product_id = ',
ctd_parsed_data_product_id)
#Only ever need one device for testing purposes.
instDevice_obj, _ = self.rrclient.find_resources(
restype=RT.InstrumentDevice, name='SBE37IMDevice')
if instDevice_obj:
instDevice_id = instDevice_obj[0]._id
else:
instDevice_obj = IonObject(RT.InstrumentDevice,
name='SBE37IMDevice',
description="SBE37IMDevice",
serial_number="12345")
instDevice_id = self.imsclient.create_instrument_device(
instrument_device=instDevice_obj)
self.damsclient.assign_data_product(
input_resource_id=instDevice_id,
data_product_id=ctd_parsed_data_product_id)
self.dataproductclient.activate_data_product_persistence(
data_product_id=ctd_parsed_data_product_id,
persist_data=False,
persist_metadata=False)
# Retrieve the id of the OUTPUT stream from the out Data Product
stream_ids, _ = self.rrclient.find_objects(ctd_parsed_data_product_id,
PRED.hasStream, None, True)
assertions(len(stream_ids) > 0)
ctd_stream_id = stream_ids[0]
return ctd_stream_id, ctd_parsed_data_product_id
def _start_simple_input_stream_process(self, ctd_stream_id):
return self._start_input_stream_process(ctd_stream_id)
def _start_sinusoidal_input_stream_process(self, ctd_stream_id):
return self._start_input_stream_process(
ctd_stream_id, 'ion.processes.data.sinusoidal_stream_publisher',
'SinusoidalCtdPublisher')
def _start_input_stream_process(
self,
ctd_stream_id,
module='ion.processes.data.ctd_stream_publisher',
class_name='SimpleCtdPublisher'):
###
### Start the process for producing the CTD data
###
# process definition for the ctd simulator...
producer_definition = ProcessDefinition()
producer_definition.executable = {
'module': module,
'class': class_name
}
ctd_sim_procdef_id = self.process_dispatcher.create_process_definition(
process_definition=producer_definition)
# Start the ctd simulator to produce some data
configuration = {
'process': {
'stream_id': ctd_stream_id,
}
}
ctd_sim_pid = self.process_dispatcher.schedule_process(
process_definition_id=ctd_sim_procdef_id,
configuration=configuration)
return ctd_sim_pid
def _start_output_stream_listener(self,
data_product_stream_ids,
message_count_per_stream=10):
cc = self.container
assertions = self.assertTrue
###
### Make a subscriber in the test to listen for transformed data
###
salinity_subscription_id = self.pubsubclient.create_subscription(
query=StreamQuery(data_product_stream_ids),
exchange_name='workflow_test',
name="test workflow transformations",
)
pid = cc.spawn_process(name='dummy_process_for_test',
module='pyon.ion.process',
cls='SimpleProcess',
config={})
dummy_process = cc.proc_manager.procs[pid]
subscriber_registrar = StreamSubscriberRegistrar(process=dummy_process,
node=cc.node)
result = gevent.event.AsyncResult()
results = []
def message_received(message, headers):
# Heads
log.warn(' data received!')
results.append(message)
if len(results) >= len(
data_product_stream_ids
) * message_count_per_stream: #Only wait for so many messages - per stream
result.set(True)
subscriber = subscriber_registrar.create_subscriber(
exchange_name='workflow_test', callback=message_received)
subscriber.start()
# after the queue has been created it is safe to activate the subscription
self.pubsubclient.activate_subscription(
subscription_id=salinity_subscription_id)
# Assert that we have received data
assertions(result.get(timeout=30))
self.pubsubclient.deactivate_subscription(
subscription_id=salinity_subscription_id)
subscriber.stop()
return results
def _validate_messages(self, results):
cc = self.container
assertions = self.assertTrue
first_salinity_values = None
for message in results:
try:
psd = PointSupplementStreamParser(
stream_definition=self.ctd_stream_def,
stream_granule=message)
temp = psd.get_values('temperature')
log.info(psd.list_field_names())
except KeyError as ke:
temp = None
if temp is not None:
assertions(isinstance(temp, numpy.ndarray))
log.info('temperature=' + str(numpy.nanmin(temp)))
first_salinity_values = None
else:
psd = PointSupplementStreamParser(
stream_definition=SalinityTransform.outgoing_stream_def,
stream_granule=message)
log.info(psd.list_field_names())
# Test the handy info method for the names of fields in the stream def
assertions('salinity' in psd.list_field_names())
# you have to know the name of the coverage in stream def
salinity = psd.get_values('salinity')
log.info('salinity=' + str(numpy.nanmin(salinity)))
assertions(isinstance(salinity, numpy.ndarray))
assertions(numpy.nanmin(salinity) >
0.0) # salinity should always be greater than 0
if first_salinity_values is None:
first_salinity_values = salinity.tolist()
else:
second_salinity_values = salinity.tolist()
assertions(
len(first_salinity_values) == len(
second_salinity_values))
for idx in range(0, len(first_salinity_values)):
assertions(first_salinity_values[idx] *
2.0 == second_salinity_values[idx])
def _create_salinity_data_process_definition(self):
# Salinity: Data Process Definition
#First look to see if it exists and if not, then create it
dpd, _ = self.rrclient.find_resources(restype=RT.DataProcessDefinition,
name='ctd_salinity')
if len(dpd) > 0:
return dpd[0]
log.debug("Create data process definition SalinityTransform")
dpd_obj = IonObject(
RT.DataProcessDefinition,
name='ctd_salinity',
description='create a salinity data product',
module='ion.processes.data.transforms.ctd.ctd_L2_salinity',
class_name='SalinityTransform',
process_source='SalinityTransform source code here...')
try:
ctd_L2_salinity_dprocdef_id = self.dataprocessclient.create_data_process_definition(
dpd_obj)
except Excpetion as ex:
self.fail(
"failed to create new SalinityTransform data process definition: %s"
% ex)
# create a stream definition for the data from the salinity Transform
sal_stream_def_id = self.pubsubclient.create_stream_definition(
container=SalinityTransform.outgoing_stream_def, name='Salinity')
self.dataprocessclient.assign_stream_definition_to_data_process_definition(
sal_stream_def_id, ctd_L2_salinity_dprocdef_id)
return ctd_L2_salinity_dprocdef_id
def _create_salinity_doubler_data_process_definition(self):
#First look to see if it exists and if not, then create it
dpd, _ = self.rrclient.find_resources(restype=RT.DataProcessDefinition,
name='salinity_doubler')
if len(dpd) > 0:
return dpd[0]
# Salinity Doubler: Data Process Definition
log.debug("Create data process definition SalinityDoublerTransform")
dpd_obj = IonObject(
RT.DataProcessDefinition,
name='salinity_doubler',
description='create a salinity doubler data product',
module='ion.processes.data.transforms.example_double_salinity',
class_name='SalinityDoubler',
process_source='SalinityDoubler source code here...')
try:
salinity_doubler_dprocdef_id = self.dataprocessclient.create_data_process_definition(
dpd_obj)
except Exception as ex:
self.fail(
"failed to create new SalinityDoubler data process definition: %s"
% ex)
# create a stream definition for the data from the salinity Transform
salinity_double_stream_def_id = self.pubsubclient.create_stream_definition(
container=SalinityDoubler.outgoing_stream_def,
name='SalinityDoubler')
self.dataprocessclient.assign_stream_definition_to_data_process_definition(
salinity_double_stream_def_id, salinity_doubler_dprocdef_id)
return salinity_doubler_dprocdef_id
def create_transform_process(self, data_process_definition_id,
data_process_input_dp_id):
data_process_definition = self.rrclient.read(
data_process_definition_id)
# Find the link between the output Stream Definition resource and the Data Process Definition resource
stream_ids, _ = self.rrclient.find_objects(data_process_definition._id,
PRED.hasStreamDefinition,
RT.StreamDefinition,
id_only=True)
if not stream_ids:
raise Inconsistent(
"The data process definition %s is missing an association to an output stream definition"
% data_process_definition._id)
process_output_stream_def_id = stream_ids[0]
#Concatenate the name of the workflow and data process definition for the name of the data product output
data_process_name = data_process_definition.name
# Create the output data product of the transform
transform_dp_obj = IonObject(
RT.DataProduct,
name=data_process_name,
description=data_process_definition.description)
transform_dp_id = self.dataproductclient.create_data_product(
transform_dp_obj, process_output_stream_def_id)
self.dataproductclient.activate_data_product_persistence(
data_product_id=transform_dp_id,
persist_data=True,
persist_metadata=True)
#last one out of the for loop is the output product id
output_data_product_id = transform_dp_id
# Create the transform data process
log.debug("create data_process and start it")
data_process_id = self.dataprocessclient.create_data_process(
data_process_definition._id, [data_process_input_dp_id],
{'output': transform_dp_id})
self.dataprocessclient.activate_data_process(data_process_id)
#Find the id of the output data stream
stream_ids, _ = self.rrclient.find_objects(transform_dp_id,
PRED.hasStream, None, True)
if not stream_ids:
raise Inconsistent(
"The data process %s is missing an association to an output stream"
% data_process_id)
return data_process_id, output_data_product_id
@attr('LOCOINT')
@unittest.skipIf(os.getenv('CEI_LAUNCH_TEST', False),
'Not integrated for CEI')
#@unittest.skip("Skipping for debugging ")
def test_SA_transform_components(self):
assertions = self.assertTrue
#The list of data product streams to monitor
data_product_stream_ids = list()
#Create the input data product
ctd_stream_id, ctd_parsed_data_product_id = self._create_ctd_input_stream_and_data_product(
)
data_product_stream_ids.append(ctd_stream_id)
###
### Setup the first transformation
###
# Salinity: Data Process Definition
ctd_L2_salinity_dprocdef_id = self._create_salinity_data_process_definition(
)
l2_salinity_all_data_process_id, ctd_l2_salinity_output_dp_id = self.create_transform_process(
ctd_L2_salinity_dprocdef_id, ctd_parsed_data_product_id)
## get the stream id for the transform outputs
stream_ids, _ = self.rrclient.find_objects(
ctd_l2_salinity_output_dp_id, PRED.hasStream, None, True)
assertions(len(stream_ids) > 0)
sal_stream_id = stream_ids[0]
data_product_stream_ids.append(sal_stream_id)
###
### Setup the second transformation
###
# Salinity Doubler: Data Process Definition
salinity_doubler_dprocdef_id = self._create_salinity_doubler_data_process_definition(
)
salinity_double_data_process_id, salinity_doubler_output_dp_id = self.create_transform_process(
salinity_doubler_dprocdef_id, ctd_l2_salinity_output_dp_id)
stream_ids, _ = self.rrclient.find_objects(
salinity_doubler_output_dp_id, PRED.hasStream, None, True)
assertions(len(stream_ids) > 0)
sal_dbl_stream_id = stream_ids[0]
data_product_stream_ids.append(sal_dbl_stream_id)
#Start the input stream process
ctd_sim_pid = self._start_simple_input_stream_process(ctd_stream_id)
#Start te output stream listener to monitor and verify messages
results = self._start_output_stream_listener(data_product_stream_ids)
#Stop the transform processes
self.dataprocessclient.deactivate_data_process(
salinity_double_data_process_id)
self.dataprocessclient.deactivate_data_process(
l2_salinity_all_data_process_id)
# stop the flow parse the messages...
self.process_dispatcher.cancel_process(
ctd_sim_pid
) # kill the ctd simulator process - that is enough data
#Validate the data from each of the messages along the way
self._validate_messages(results)
@attr('LOCOINT')
@unittest.skipIf(os.getenv('CEI_LAUNCH_TEST', False),
'Not integrated for CEI')
#@unittest.skip("Skipping for debugging ")
def test_transform_workflow(self):
assertions = self.assertTrue
# Build the workflow definition
workflow_def_obj = IonObject(
RT.WorkflowDefinition,
name='Salinity_Test_Workflow',
description='tests a workflow of multiple transform data processes'
)
workflow_data_product_name = 'TEST-Workflow_Output_Product' #Set a specific output product name
#Add a transformation process definition
ctd_L2_salinity_dprocdef_id = self._create_salinity_data_process_definition(
)
workflow_step_obj = IonObject(
'DataProcessWorkflowStep',
data_process_definition_id=ctd_L2_salinity_dprocdef_id,
persist_process_output_data=False
) #Don't persist the intermediate data product
workflow_def_obj.workflow_steps.append(workflow_step_obj)
#Add a transformation process definition
salinity_doubler_dprocdef_id = self._create_salinity_doubler_data_process_definition(
)
workflow_step_obj = IonObject(
'DataProcessWorkflowStep',
data_process_definition_id=salinity_doubler_dprocdef_id,
output_data_product_name=workflow_data_product_name)
workflow_def_obj.workflow_steps.append(workflow_step_obj)
#Create it in the resource registry
workflow_def_id = self.workflowclient.create_workflow_definition(
workflow_def_obj)
aids = self.rrclient.find_associations(workflow_def_id,
PRED.hasDataProcessDefinition)
assertions(len(aids) == 2)
#The list of data product streams to monitor
data_product_stream_ids = list()
#Create the input data product
ctd_stream_id, ctd_parsed_data_product_id = self._create_ctd_input_stream_and_data_product(
)
data_product_stream_ids.append(ctd_stream_id)
#Create and start the workflow
workflow_id, workflow_product_id = self.workflowclient.create_data_process_workflow(
workflow_def_id, ctd_parsed_data_product_id, timeout=30)
workflow_output_ids, _ = self.rrclient.find_subjects(
RT.Workflow, PRED.hasOutputProduct, workflow_product_id, True)
assertions(len(workflow_output_ids) == 1)
#Verify the output data product name matches what was specified in the workflow definition
workflow_product = self.rrclient.read(workflow_product_id)
assertions(workflow_product.name == workflow_data_product_name)
#Walk the associations to find the appropriate output data streams to validate the messages
workflow_dp_ids, _ = self.rrclient.find_objects(
workflow_id, PRED.hasDataProduct, RT.DataProduct, True)
assertions(len(workflow_dp_ids) == 2)
for dp_id in workflow_dp_ids:
stream_ids, _ = self.rrclient.find_objects(dp_id, PRED.hasStream,
None, True)
assertions(len(stream_ids) == 1)
data_product_stream_ids.append(stream_ids[0])
#Start the input stream process
ctd_sim_pid = self._start_simple_input_stream_process(ctd_stream_id)
#Start the output stream listener to monitor and verify messages
results = self._start_output_stream_listener(data_product_stream_ids)
#Stop the workflow processes
self.workflowclient.terminate_data_process_workflow(
workflow_id, False, timeout=15) # Should test true at some point
#Make sure the Workflow object was removed
objs, _ = self.rrclient.find_resources(restype=RT.Workflow)
assertions(len(objs) == 0)
# stop the flow parse the messages...
self.process_dispatcher.cancel_process(
ctd_sim_pid
) # kill the ctd simulator process - that is enough data
#Validate the data from each of the messages along the way
self._validate_messages(results)
#Cleanup to make sure delete is correct.
self.workflowclient.delete_workflow_definition(workflow_def_id)
workflow_def_ids, _ = self.rrclient.find_resources(
restype=RT.WorkflowDefinition)
assertions(len(workflow_def_ids) == 0)
def _create_google_dt_data_process_definition(self):
#First look to see if it exists and if not, then create it
dpd, _ = self.rrclient.find_resources(restype=RT.DataProcessDefinition,
name='google_dt_transform')
if len(dpd) > 0:
return dpd[0]
# Data Process Definition
log.debug("Create data process definition GoogleDtTransform")
dpd_obj = IonObject(
RT.DataProcessDefinition,
name='google_dt_transform',
description='Convert data streams to Google DataTables',
module='ion.processes.data.transforms.viz.google_dt',
class_name='VizTransformGoogleDT',
process_source='VizTransformGoogleDT source code here...')
try:
procdef_id = self.dataprocessclient.create_data_process_definition(
dpd_obj)
except Exception as ex:
self.fail(
"failed to create new VizTransformGoogleDT data process definition: %s"
% ex)
# create a stream definition for the data from the
stream_def_id = self.pubsubclient.create_stream_definition(
container=VizTransformGoogleDT.outgoing_stream_def,
name='VizTransformGoogleDT')
self.dataprocessclient.assign_stream_definition_to_data_process_definition(
stream_def_id, procdef_id)
return procdef_id
def _validate_google_dt_results(self, results_stream_def, results):
cc = self.container
assertions = self.assertTrue
for g in results:
if isinstance(g, Granule):
tx = TaxyTool.load_from_granule(g)
rdt = RecordDictionaryTool.load_from_granule(g)
#log.warn(tx.pretty_print())
#log.warn(rdt.pretty_print())
gdt_component = rdt['google_dt_components'][0]
assertions(
gdt_component['viz_product_type'] == 'google_realtime_dt')
gdt_description = gdt_component['data_table_description']
gdt_content = gdt_component['data_table_content']
assertions(gdt_description[0][0] == 'time')
assertions(len(gdt_description) > 1)
assertions(len(gdt_content) >= 0)
return
def _create_mpl_graphs_data_process_definition(self):
#First look to see if it exists and if not, then create it
dpd, _ = self.rrclient.find_resources(restype=RT.DataProcessDefinition,
name='mpl_graphs_transform')
if len(dpd) > 0:
return dpd[0]
#Data Process Definition
log.debug("Create data process definition MatplotlibGraphsTransform")
dpd_obj = IonObject(
RT.DataProcessDefinition,
name='mpl_graphs_transform',
description='Convert data streams to Matplotlib graphs',
module='ion.processes.data.transforms.viz.matplotlib_graphs',
class_name='VizTransformMatplotlibGraphs',
process_source='VizTransformMatplotlibGraphs source code here...')
try:
procdef_id = self.dataprocessclient.create_data_process_definition(
dpd_obj)
except Exception as ex:
self.fail(
"failed to create new VizTransformMatplotlibGraphs data process definition: %s"
% ex)
# create a stream definition for the data
stream_def_id = self.pubsubclient.create_stream_definition(
container=VizTransformMatplotlibGraphs.outgoing_stream_def,
name='VizTransformMatplotlibGraphs')
self.dataprocessclient.assign_stream_definition_to_data_process_definition(
stream_def_id, procdef_id)
return procdef_id
def _validate_mpl_graphs_results(self, results_stream_def, results):
cc = self.container
assertions = self.assertTrue
for g in results:
if isinstance(g, Granule):
tx = TaxyTool.load_from_granule(g)
rdt = RecordDictionaryTool.load_from_granule(g)
#log.warn(tx.pretty_print())
#log.warn(rdt.pretty_print())
graphs = rdt['matplotlib_graphs']
for graph in graphs:
assertions(
graph['viz_product_type'] == 'matplotlib_graphs')
# check to see if the list (numpy array) contians actual images
assertions(
imghdr.what(graph['image_name'], graph['image_obj']) ==
'png')
return
@attr('LOCOINT')
@unittest.skipIf(os.getenv('CEI_LAUNCH_TEST', False),
'Not integrated for CEI')
#unittest.skip("Skipping for debugging ")
def test_google_dt_transform_workflow(self):
assertions = self.assertTrue
# Build the workflow definition
workflow_def_obj = IonObject(
RT.WorkflowDefinition,
name='GoogleDT_Test_Workflow',
description=
'Tests the workflow of converting stream data to Google DT')
#Add a transformation process definition
google_dt_procdef_id = self._create_google_dt_data_process_definition()
workflow_step_obj = IonObject(
'DataProcessWorkflowStep',
data_process_definition_id=google_dt_procdef_id)
workflow_def_obj.workflow_steps.append(workflow_step_obj)
#Create it in the resource registry
workflow_def_id = self.workflowclient.create_workflow_definition(
workflow_def_obj)
#The list of data product streams to monitor
data_product_stream_ids = list()
#Create the input data product
ctd_stream_id, ctd_parsed_data_product_id = self._create_ctd_input_stream_and_data_product(
)
data_product_stream_ids.append(ctd_stream_id)
#Create and start the workflow
workflow_id, workflow_product_id = self.workflowclient.create_data_process_workflow(
workflow_def_id, ctd_parsed_data_product_id)
workflow_output_ids, _ = self.rrclient.find_subjects(
RT.Workflow, PRED.hasOutputProduct, workflow_product_id, True)
assertions(len(workflow_output_ids) == 1)
#Walk the associations to find the appropriate output data streams to validate the messages
workflow_dp_ids, _ = self.rrclient.find_objects(
workflow_id, PRED.hasDataProduct, RT.DataProduct, True)
assertions(len(workflow_dp_ids) == 1)
for dp_id in workflow_dp_ids:
stream_ids, _ = self.rrclient.find_objects(dp_id, PRED.hasStream,
None, True)
assertions(len(stream_ids) == 1)
data_product_stream_ids.append(stream_ids[0])
#Start the input stream process
ctd_sim_pid = self._start_simple_input_stream_process(ctd_stream_id)
#Start the output stream listener to monitor and verify messages
results = self._start_output_stream_listener(data_product_stream_ids)
#Stop the workflow processes
self.workflowclient.terminate_data_process_workflow(
workflow_id, False) # Should test true at some point
# stop the flow parse the messages...
self.process_dispatcher.cancel_process(
ctd_sim_pid
) # kill the ctd simulator process - that is enough data
#Validate the data from each of the messages along the way
self._validate_google_dt_results(
VizTransformGoogleDT.outgoing_stream_def, results)
#Cleanup to make sure delete is correct.
self.workflowclient.delete_workflow_definition(workflow_def_id)
workflow_def_ids, _ = self.rrclient.find_resources(
restype=RT.WorkflowDefinition)
assertions(len(workflow_def_ids) == 0)
@attr('LOCOINT')
@unittest.skipIf(os.getenv('CEI_LAUNCH_TEST', False),
'Not integrated for CEI')
#@unittest.skip("Skipping for debugging ")
def test_mpl_graphs_transform_workflow(self):
assertions = self.assertTrue
# Build the workflow definition
workflow_def_obj = IonObject(
RT.WorkflowDefinition,
name='Mpl_Graphs_Test_Workflow',
description=
'Tests the workflow of converting stream data to Matplotlib graphs'
)
#Add a transformation process definition
mpl_graphs_procdef_id = self._create_mpl_graphs_data_process_definition(
)
workflow_step_obj = IonObject(
'DataProcessWorkflowStep',
data_process_definition_id=mpl_graphs_procdef_id)
workflow_def_obj.workflow_steps.append(workflow_step_obj)
#Create it in the resource registry
workflow_def_id = self.workflowclient.create_workflow_definition(
workflow_def_obj)
#The list of data product streams to monitor
data_product_stream_ids = list()
#Create the input data product
ctd_stream_id, ctd_parsed_data_product_id = self._create_ctd_input_stream_and_data_product(
)
data_product_stream_ids.append(ctd_stream_id)
#Create and start the workflow
workflow_id, workflow_product_id = self.workflowclient.create_data_process_workflow(
workflow_def_id, ctd_parsed_data_product_id)
workflow_output_ids, _ = self.rrclient.find_subjects(
RT.Workflow, PRED.hasOutputProduct, workflow_product_id, True)
assertions(len(workflow_output_ids) == 1)
#Walk the associations to find the appropriate output data streams to validate the messages
workflow_dp_ids, _ = self.rrclient.find_objects(
workflow_id, PRED.hasDataProduct, RT.DataProduct, True)
assertions(len(workflow_dp_ids) == 1)
for dp_id in workflow_dp_ids:
stream_ids, _ = self.rrclient.find_objects(dp_id, PRED.hasStream,
None, True)
assertions(len(stream_ids) == 1)
data_product_stream_ids.append(stream_ids[0])
#Start the input stream process
ctd_sim_pid = self._start_sinusoidal_input_stream_process(
ctd_stream_id)
#Start the output stream listener to monitor and verify messages
results = self._start_output_stream_listener(data_product_stream_ids)
#Stop the workflow processes
self.workflowclient.terminate_data_process_workflow(
workflow_id, False) # Should test true at some point
# stop the flow parse the messages...
self.process_dispatcher.cancel_process(
ctd_sim_pid
) # kill the ctd simulator process - that is enough data
#Validate the data from each of the messages along the way
self._validate_mpl_graphs_results(
VizTransformGoogleDT.outgoing_stream_def, results)
#Cleanup to make sure delete is correct.
self.workflowclient.delete_workflow_definition(workflow_def_id)
workflow_def_ids, _ = self.rrclient.find_resources(
restype=RT.WorkflowDefinition)
assertions(len(workflow_def_ids) == 0)
@attr('LOCOINT')
@unittest.skipIf(os.getenv('CEI_LAUNCH_TEST', False),
'Not integrated for CEI')
#@unittest.skip("Skipping for debugging ")
def test_multiple_workflow_instances(self):
assertions = self.assertTrue
# Build the workflow definition
workflow_def_obj = IonObject(
RT.WorkflowDefinition,
name='Multiple_Test_Workflow',
description='Tests the workflow of converting stream data')
#Add a transformation process definition
google_dt_procdef_id = self._create_google_dt_data_process_definition()
workflow_step_obj = IonObject(
'DataProcessWorkflowStep',
data_process_definition_id=google_dt_procdef_id)
workflow_def_obj.workflow_steps.append(workflow_step_obj)
#Create it in the resource registry
workflow_def_id = self.workflowclient.create_workflow_definition(
workflow_def_obj)
#The list of data product streams to monitor
data_product_stream_ids = list()
#Create the first input data product
ctd_stream_id1, ctd_parsed_data_product_id1 = self._create_ctd_input_stream_and_data_product(
'ctd_parsed1')
data_product_stream_ids.append(ctd_stream_id1)
#Create and start the first workflow
workflow_id1, workflow_product_id1 = self.workflowclient.create_data_process_workflow(
workflow_def_id, ctd_parsed_data_product_id1)
#Create the second input data product
ctd_stream_id2, ctd_parsed_data_product_id2 = self._create_ctd_input_stream_and_data_product(
'ctd_parsed2')
data_product_stream_ids.append(ctd_stream_id2)
#Create and start the first workflow
workflow_id2, workflow_product_id2 = self.workflowclient.create_data_process_workflow(
workflow_def_id, ctd_parsed_data_product_id2)
#Walk the associations to find the appropriate output data streams to validate the messages
workflow_ids, _ = self.rrclient.find_resources(restype=RT.Workflow)
assertions(len(workflow_ids) == 2)
#Start the first input stream process
ctd_sim_pid1 = self._start_sinusoidal_input_stream_process(
ctd_stream_id1)
#Start the second input stream process
ctd_sim_pid2 = self._start_simple_input_stream_process(ctd_stream_id2)
#Start the output stream listener to monitor a set number of messages being sent through the workflows
results = self._start_output_stream_listener(
data_product_stream_ids, message_count_per_stream=5)
# stop the flow of messages...
self.process_dispatcher.cancel_process(
ctd_sim_pid1
) # kill the ctd simulator process - that is enough data
self.process_dispatcher.cancel_process(ctd_sim_pid2)
#Stop the first workflow processes
self.workflowclient.terminate_data_process_workflow(
workflow_id1, False) # Should test true at some point
#Stop the second workflow processes
self.workflowclient.terminate_data_process_workflow(
workflow_id2, False) # Should test true at some point
workflow_ids, _ = self.rrclient.find_resources(restype=RT.Workflow)
assertions(len(workflow_ids) == 0)
#Cleanup to make sure delete is correct.
self.workflowclient.delete_workflow_definition(workflow_def_id)
workflow_def_ids, _ = self.rrclient.find_resources(
restype=RT.WorkflowDefinition)
assertions(len(workflow_def_ids) == 0)
aid_list = self.rrclient.find_associations(
workflow_def_id, PRED.hasDataProcessDefinition)
assertions(len(aid_list) == 0)
class TestResourceRegistryAttachments(IonIntegrationTestCase):
def setUp(self):
# Start container
#print 'instantiating container'
self._start_container()
#container = Container()
#print 'starting container'
#container.start()
#print 'started container'
self.container.start_rel_from_url('res/deploy/r2deploy.yml')
self.RR = ResourceRegistryServiceClient(node=self.container.node)
print 'started services'
def test_resource_registry_blob_sanity(self):
resource_id, _ = self.RR.create(IonObject(RT.Resource, name="foo"))
MY_CONTENT = "the quick brown fox etc etc etc"
#save
att_id = self.RR.create_attachment(
resource_id,
IonObject(RT.Attachment,
name="test.txt",
content=MY_CONTENT,
content_type="text/plain",
keywords=["test1", "test2"],
attachment_type=AttachmentType.BLOB))
#load
attachment = self.RR.read_attachment(att_id, include_content=True)
self.assertEqual("test.txt", attachment.name)
self.assertEqual("text/plain", attachment.content_type)
self.assertIn("test1", attachment.keywords)
self.assertIn("test2", attachment.keywords)
#content has changed; it's base64-encoded from what we put in
self.assertEqual(MY_CONTENT, attachment.content)
obj = self.RR.read(resource_id)
self.assertEqual(obj.name, "foo")
obj.name = "TheDudeAbides"
obj = self.RR.update(obj)
obj = self.RR.read(resource_id)
self.assertEqual(obj.name, "TheDudeAbides")
att = self.RR.find_attachments(resource_id)
self.assertNotEqual(att, None)
actor_identity_obj = IonObject("ActorIdentity", name="name")
actor_identity_obj_id, actor_identity_obj_rev = self.RR.create(
actor_identity_obj)
user_info_obj = IonObject("UserInfo", name="name")
user_info_obj_id, user_info_obj_rev = self.RR.create(user_info_obj)
assoc_id, assoc_rev = self.RR.create_association(
actor_identity_obj_id, PRED.hasInfo, user_info_obj_id)
self.assertNotEqual(assoc_id, None)
find_assoc = self.RR.find_associations(actor_identity_obj_id,
PRED.hasInfo, user_info_obj_id)
self.assertTrue(find_assoc[0]._id == assoc_id)
subj = self.RR.find_subjects(RT.ActorIdentity, PRED.hasInfo,
user_info_obj_id, True)
res_obj1 = self.RR.read_object(actor_identity_obj_id, PRED.hasInfo,
RT.UserInfo)
self.assertEquals(res_obj1._id, user_info_obj_id)
self.RR.delete_association(assoc_id)
self.RR.delete_attachment(att_id)
self.RR.delete(resource_id)
class TestFindRelatedResources(IonIntegrationTestCase, ResourceHelper):
"""
assembly integration tests at the service level
"""
def setUp(self):
# Start container
self._start_container()
self.container.start_rel_from_url('res/deploy/r2deploy.yml')
self.IMS = InstrumentManagementServiceClient(node=self.container.node)
self.OMS = ObservatoryManagementServiceClient(node=self.container.node)
self.RR = ResourceRegistryServiceClient(node=self.container.node)
self.care = {}
self.dontcare = {}
self.realtype = {}
# @unittest.skip('this test just for debugging setup')
# def test_just_the_setup(self):
# return
def create_dummy_structure(self):
"""
Create two observatories.
- each observatory has 2 subsites
- each subsite has 2 more subsites
- each of those subsites has 2 platform sites
- each of those platform sites has a model and 2 sub- platform sites
- each of those sub- platform sites has a model, matching platform device, and 2 instrument sites
- each of those instrument sites has a model and matching instrument device
One of each resource type (observatory all the way down to instrument device/model) is what we "care" about
- it goes in the self.care dict
All the rest go in the self.dontcare dict
To manage subsite/platform multiplicity, we alias them in the dict... the proper hierarchy is:
Observatory-Site-Subsite-PlatformSite-SubPlatformSite-InstrumentSite
self.realtype[alias] gives the real resource type of an alias
"""
self.create_observatory(True)
self.create_observatory(False)
for rt in [RT.Observatory, RT_SITE, RT.Subsite,
RT.PlatformSite, RT_SUBPLATFORMSITE, RT.PlatformDevice, RT.PlatformModel,
RT.InstrumentSite, RT.InstrumentDevice, RT.InstrumentModel
]:
self.assertIn(rt, self.care)
self.expected_associations = [
(RT.Observatory, PRED.hasSite, RT_SITE),
(RT.Site, PRED.hasSite, RT.Subsite),
(RT.Subsite, PRED.hasSite, RT.PlatformSite),
(RT.PlatformSite, PRED.hasSite, RT_SUBPLATFORMSITE),
(RT_SUBPLATFORMSITE, PRED.hasSite, RT.InstrumentSite),
(RT_SUBPLATFORMSITE, PRED.hasModel, RT.PlatformModel),
(RT_SUBPLATFORMSITE, PRED.hasDevice, RT.PlatformDevice),
(RT.PlatformDevice, PRED.hasModel, RT.PlatformModel),
(RT.InstrumentSite, PRED.hasModel, RT.InstrumentModel),
(RT.InstrumentSite, PRED.hasDevice, RT.InstrumentDevice),
(RT.InstrumentDevice, PRED.hasModel, RT.InstrumentModel)
]
log.info("Verifying created structure")
for (st, p, ot) in self.expected_associations:
rst = self.realtype[st]
rot = self.realtype[ot]
s = self.care[st]
o = self.care[ot]
log.debug("searching %s->%s->%s as %s->%s->%s" % (st, p, ot, rst, p, rot))
log.debug(" - expecting %s %s" % (rot, o))
a = self.RR.find_associations(subject=s, predicate=p, object=o)
if not (0 < len(a) < 3):
a2 = self.RR.find_associations(subject=s, predicate=p)
a2content = [("(%s %s)" % (alt.ot, alt.o)) for alt in a2]
self.fail("Expected 1-2 associations for %s->%s->%s, got %s: %s" % (st, p, ot, len(a2), a2content))
self.assertIn(o, [aa.o for aa in a])
log.info("CREATED STRUCTURE APPEARS CORRECT ===============================")
def simplify_assn_resource_ids(self, assn_list):
count = 0
lookup = {}
retval = []
for a in assn_list:
if not a.s in lookup:
lookup[a.s] = count
count += 1
if not a.o in lookup:
lookup[a.o] = count
count += 1
retval.append(DotDict({"s":lookup[a.s], "st":a.st, "p":a.p, "o":lookup[a.o], "ot":a.ot}))
return retval
def describe_assn_graph(self, assn_list):
return [("%s %s -> %s -> %s %s" % (a.st, a.s, a.p, a.ot, a.o)) for a in assn_list]
#@unittest.skip('refactoring')
def test_related_resource_crawler(self):
"""
"""
self.create_dummy_structure()
r = RelatedResourcesCrawler()
# test the basic forward-backward searches
for (st, p, ot) in self.expected_associations:
rst = self.realtype[st]
rot = self.realtype[ot]
s = self.care[st]
o = self.care[ot]
test_sto_fn = r.generate_get_related_resources_fn(self.RR, [rot], {p: (True, False)})
sto_crawl = test_sto_fn(s, 1) # depth of 1
if 2 < len(sto_crawl): # we get 2 because of care/dontcare
self.fail("got %s" % self.describe_assn_graph(self.simplify_assn_resource_ids(sto_crawl)))
self.assertIn(o, [t.o for t in sto_crawl])
test_ots_fn = r.generate_get_related_resources_fn(self.RR, [rst], {p: (False, True)})
ots_crawl = test_ots_fn(o, 1) # depth of 1
if 1 != len(ots_crawl):
self.fail("got %s" % self.describe_assn_graph(self.simplify_assn_resource_ids(ots_crawl)))
# test a nontrivial lookup, in which we extract resources related to an instrument device
rw = []
pd = {}
# we want things related to an instrument device
rw.append(RT.PlatformModel)
rw.append(RT.InstrumentModel)
rw.append(RT.PlatformDevice)
rw.append(RT.InstrumentSite)
rw.append(RT.PlatformSite)
rw.append(RT.Subsite)
rw.append(RT.Observatory)
rw.append(RT.InstrumentDevice)
pd[PRED.hasModel] = (True, True)
pd[PRED.hasDevice] = (False, True)
pd[PRED.hasSite] = (False, True)
test_real_fn = r.generate_get_related_resources_fn(self.RR, resource_whitelist=rw, predicate_dictionary=pd)
related = test_real_fn(self.care[RT.InstrumentDevice])
log.debug("========= Result is:")
for l in self.describe_assn_graph(self.simplify_assn_resource_ids(related)):
log.debug(" %s", l)
# check that we only got things we care about
for a in related:
# special case for platform model, because we don't care about the top-level platform's model
# so it will blow up if we don't ignore it. if we got an extra platform model, we'd have an
# extra platform anyway... so this special case is safe.
if a.st != RT.PlatformModel:
self.assertIn(a.s, self.care.values(), "%s %s not cared about" % (a.st, a.s))
if a.ot != RT.PlatformModel:
self.assertIn(a.o, self.care.values(), "%s %s not cared about" % (a.ot, a.o))
class TestIntDataProcessManagementServiceMultiOut(IonIntegrationTestCase):
def setUp(self):
# Start container
self._start_container()
self.container.start_rel_from_url('res/deploy/r2deploy.yml')
# Now create client to DataProductManagementService
self.rrclient = ResourceRegistryServiceClient(node=self.container.node)
self.damsclient = DataAcquisitionManagementServiceClient(node=self.container.node)
self.pubsubclient = PubsubManagementServiceClient(node=self.container.node)
self.ingestclient = IngestionManagementServiceClient(node=self.container.node)
self.imsclient = InstrumentManagementServiceClient(node=self.container.node)
self.dataproductclient = DataProductManagementServiceClient(node=self.container.node)
self.dataprocessclient = DataProcessManagementServiceClient(node=self.container.node)
self.datasetclient = DatasetManagementServiceClient(node=self.container.node)
self.dataset_management = self.datasetclient
self.process_dispatcher = ProcessDispatcherServiceClient(node=self.container.node)
def test_createDataProcess(self):
#---------------------------------------------------------------------------
# Data Process Definition
#---------------------------------------------------------------------------
dpd_obj = IonObject(RT.DataProcessDefinition,
name='ctd_L0_all',
description='transform ctd package into three separate L0 streams',
module='ion.processes.data.transforms.ctd.ctd_L0_all',
class_name='ctd_L0_all')
dprocdef_id = self.dataprocessclient.create_data_process_definition(dpd_obj)
# Make assertion on the newly registered data process definition
data_process_definition = self.rrclient.read(dprocdef_id)
self.assertEquals(data_process_definition.name, 'ctd_L0_all')
self.assertEquals(data_process_definition.description, 'transform ctd package into three separate L0 streams')
self.assertEquals(data_process_definition.module, 'ion.processes.data.transforms.ctd.ctd_L0_all')
self.assertEquals(data_process_definition.class_name, 'ctd_L0_all')
# Read the data process definition using data process management and make assertions
dprocdef_obj = self.dataprocessclient.read_data_process_definition(dprocdef_id)
self.assertEquals(dprocdef_obj.class_name,'ctd_L0_all')
self.assertEquals(dprocdef_obj.module,'ion.processes.data.transforms.ctd.ctd_L0_all')
#---------------------------------------------------------------------------
# Create an input instrument
#---------------------------------------------------------------------------
instrument_obj = IonObject(RT.InstrumentDevice, name='Inst1',description='an instrument that is creating the data product')
instrument_id, rev = self.rrclient.create(instrument_obj)
# Register the instrument so that the data producer and stream object are created
data_producer_id = self.damsclient.register_instrument(instrument_id)
# create a stream definition for the data from the ctd simulator
pdict_id = self.dataset_management.read_parameter_dictionary_by_name('ctd_parsed_param_dict', id_only=True)
ctd_stream_def_id = self.pubsubclient.create_stream_definition(name='Simulated CTD data', parameter_dictionary_id=pdict_id)
self.dataprocessclient.assign_input_stream_definition_to_data_process_definition(ctd_stream_def_id, dprocdef_id )
# Assert that the link between the stream definition and the data process definition was done
assocs = self.rrclient.find_associations(subject=dprocdef_id, predicate=PRED.hasInputStreamDefinition, object=ctd_stream_def_id, id_only=True)
self.assertIsNotNone(assocs)
#---------------------------------------------------------------------------
# Input Data Product
#---------------------------------------------------------------------------
tdom, sdom = time_series_domain()
sdom = sdom.dump()
tdom = tdom.dump()
input_dp_obj = IonObject( RT.DataProduct,
name='InputDataProduct',
description='some new dp',
temporal_domain = tdom,
spatial_domain = sdom)
input_dp_id = self.dataproductclient.create_data_product(data_product=input_dp_obj, stream_definition_id=ctd_stream_def_id, exchange_point='test')
#Make assertions on the input data product created
input_dp_obj = self.rrclient.read(input_dp_id)
self.assertEquals(input_dp_obj.name, 'InputDataProduct')
self.assertEquals(input_dp_obj.description, 'some new dp')
self.damsclient.assign_data_product(instrument_id, input_dp_id)
# Retrieve the stream via the DataProduct->Stream associations
stream_ids, _ = self.rrclient.find_objects(input_dp_id, PRED.hasStream, None, True)
self.in_stream_id = stream_ids[0]
#---------------------------------------------------------------------------
# Output Data Product
#---------------------------------------------------------------------------
outgoing_stream_conductivity_id = self.pubsubclient.create_stream_definition(name='conductivity', parameter_dictionary_id=pdict_id)
self.dataprocessclient.assign_stream_definition_to_data_process_definition(outgoing_stream_conductivity_id, dprocdef_id,binding='conductivity' )
outgoing_stream_pressure_id = self.pubsubclient.create_stream_definition(name='pressure', parameter_dictionary_id=pdict_id)
self.dataprocessclient.assign_stream_definition_to_data_process_definition(outgoing_stream_pressure_id, dprocdef_id, binding='pressure' )
outgoing_stream_temperature_id = self.pubsubclient.create_stream_definition(name='temperature', parameter_dictionary_id=pdict_id)
self.dataprocessclient.assign_stream_definition_to_data_process_definition(outgoing_stream_temperature_id, dprocdef_id, binding='temperature' )
self.output_products={}
output_dp_obj = IonObject(RT.DataProduct,
name='conductivity',
description='transform output conductivity',
temporal_domain = tdom,
spatial_domain = sdom)
output_dp_id_1 = self.dataproductclient.create_data_product(output_dp_obj, outgoing_stream_conductivity_id)
self.output_products['conductivity'] = output_dp_id_1
output_dp_obj = IonObject(RT.DataProduct,
name='pressure',
description='transform output pressure',
temporal_domain = tdom,
spatial_domain = sdom)
output_dp_id_2 = self.dataproductclient.create_data_product(output_dp_obj, outgoing_stream_pressure_id)
self.output_products['pressure'] = output_dp_id_2
output_dp_obj = IonObject(RT.DataProduct,
name='temperature',
description='transform output ',
temporal_domain = tdom,
spatial_domain = sdom)
output_dp_id_3 = self.dataproductclient.create_data_product(output_dp_obj, outgoing_stream_temperature_id)
self.output_products['temperature'] = output_dp_id_3
#---------------------------------------------------------------------------
# Create the data process
#---------------------------------------------------------------------------
def _create_data_process():
dproc_id = self.dataprocessclient.create_data_process(dprocdef_id, [input_dp_id], self.output_products)
return dproc_id
dproc_id = _create_data_process()
# Make assertions on the data process created
data_process = self.dataprocessclient.read_data_process(dproc_id)
# Assert that the data process has a process id attached
self.assertIsNotNone(data_process.process_id)
# Assert that the data process got the input data product's subscription id attached as its own input_susbcription_id attribute
self.assertIsNotNone(data_process.input_subscription_id)
output_data_product_ids = self.rrclient.find_objects(subject=dproc_id, predicate=PRED.hasOutputProduct, object_type=RT.DataProduct, id_only=True)
self.assertEquals(Set(output_data_product_ids[0]), Set([output_dp_id_1,output_dp_id_2,output_dp_id_3]))
@patch.dict(CFG, {'endpoint':{'receive':{'timeout': 60}}})
def test_createDataProcessUsingSim(self):
#-------------------------------
# Create InstrumentModel
#-------------------------------
instModel_obj = IonObject(RT.InstrumentModel, name='SBE37IMModel', description="SBE37IMModel" )
instModel_id = self.imsclient.create_instrument_model(instModel_obj)
#-------------------------------
# Create InstrumentAgent
#-------------------------------
instAgent_obj = IonObject(RT.InstrumentAgent, name='agent007', description="SBE37IMAgent", driver_uri="http://sddevrepo.oceanobservatories.org/releases/seabird_sbe37smb_ooicore-0.0.1-py2.7.egg")
instAgent_id = self.imsclient.create_instrument_agent(instAgent_obj)
self.imsclient.assign_instrument_model_to_instrument_agent(instModel_id, instAgent_id)
#-------------------------------
# Create InstrumentDevice
#-------------------------------
instDevice_obj = IonObject(RT.InstrumentDevice, name='SBE37IMDevice', description="SBE37IMDevice", serial_number="12345" )
instDevice_id = self.imsclient.create_instrument_device(instrument_device=instDevice_obj)
self.imsclient.assign_instrument_model_to_instrument_device(instModel_id, instDevice_id)
#-------------------------------
# Create InstrumentAgentInstance to hold configuration information
#-------------------------------
port_agent_config = {
'device_addr': 'sbe37-simulator.oceanobservatories.org',
'device_port': 4001,
'process_type': PortAgentProcessType.UNIX,
'binary_path': "port_agent",
'command_port': 4002,
'data_port': 4003,
'log_level': 5,
}
port_agent_config = {
'device_addr': CFG.device.sbe37.host,
'device_port': CFG.device.sbe37.port,
'process_type': PortAgentProcessType.UNIX,
'binary_path': "port_agent",
'port_agent_addr': 'localhost',
'command_port': CFG.device.sbe37.port_agent_cmd_port,
'data_port': CFG.device.sbe37.port_agent_data_port,
'log_level': 5,
'type': PortAgentType.ETHERNET
}
instAgentInstance_obj = IonObject(RT.InstrumentAgentInstance, name='SBE37IMAgentInstance', description="SBE37IMAgentInstance",
port_agent_config = port_agent_config)
instAgentInstance_id = self.imsclient.create_instrument_agent_instance(instAgentInstance_obj, instAgent_id, instDevice_id)
#-------------------------------
# Create CTD Parsed as the first data product
#-------------------------------
# create a stream definition for the data from the ctd simulator
pdict_id = self.dataset_management.read_parameter_dictionary_by_name('ctd_parsed_param_dict', id_only=True)
ctd_stream_def_id = self.pubsubclient.create_stream_definition(name='SBE32_CDM', parameter_dictionary_id=pdict_id)
# Construct temporal and spatial Coordinate Reference System objects
tdom, sdom = time_series_domain()
sdom = sdom.dump()
tdom = tdom.dump()
dp_obj = IonObject(RT.DataProduct,
name='ctd_parsed',
description='ctd stream test',
temporal_domain = tdom,
spatial_domain = sdom)
ctd_parsed_data_product = self.dataproductclient.create_data_product(dp_obj, ctd_stream_def_id)
self.damsclient.assign_data_product(input_resource_id=instDevice_id, data_product_id=ctd_parsed_data_product)
# Retrieve the id of the OUTPUT stream from the out Data Product
stream_ids, _ = self.rrclient.find_objects(ctd_parsed_data_product, PRED.hasStream, None, True)
#-------------------------------
# Create CTD Raw as the second data product
#-------------------------------
raw_stream_def_id = self.pubsubclient.create_stream_definition(name='SBE37_RAW', parameter_dictionary_id=pdict_id)
dp_obj.name = 'ctd_raw'
ctd_raw_data_product = self.dataproductclient.create_data_product(dp_obj, raw_stream_def_id)
self.damsclient.assign_data_product(input_resource_id=instDevice_id, data_product_id=ctd_raw_data_product)
# Retrieve the id of the OUTPUT stream from the out Data Product
stream_ids, _ = self.rrclient.find_objects(ctd_raw_data_product, PRED.hasStream, None, True)
#-------------------------------
# L0 Conductivity - Temperature - Pressure: Data Process Definition
#-------------------------------
dpd_obj = IonObject(RT.DataProcessDefinition,
name='ctd_L0_all',
description='transform ctd package into three separate L0 streams',
module='ion.processes.data.transforms.ctd.ctd_L0_all',
class_name='ctd_L0_all')
ctd_L0_all_dprocdef_id = self.dataprocessclient.create_data_process_definition(dpd_obj)
#-------------------------------
# L0 Conductivity - Temperature - Pressure: Output Data Products
#-------------------------------
outgoing_stream_l0_conductivity_id = self.pubsubclient.create_stream_definition(name='L0_Conductivity', parameter_dictionary_id=pdict_id)
self.dataprocessclient.assign_stream_definition_to_data_process_definition(outgoing_stream_l0_conductivity_id, ctd_L0_all_dprocdef_id, binding='conductivity' )
outgoing_stream_l0_pressure_id = self.pubsubclient.create_stream_definition(name='L0_Pressure', parameter_dictionary_id=pdict_id)
self.dataprocessclient.assign_stream_definition_to_data_process_definition(outgoing_stream_l0_pressure_id, ctd_L0_all_dprocdef_id, binding='pressure' )
outgoing_stream_l0_temperature_id = self.pubsubclient.create_stream_definition(name='L0_Temperature', parameter_dictionary_id=pdict_id)
self.dataprocessclient.assign_stream_definition_to_data_process_definition(outgoing_stream_l0_temperature_id, ctd_L0_all_dprocdef_id, binding='temperature' )
self.output_products={}
ctd_l0_conductivity_output_dp_obj = IonObject( RT.DataProduct,
name='L0_Conductivity',
description='transform output conductivity',
temporal_domain = tdom,
spatial_domain = sdom)
ctd_l0_conductivity_output_dp_id = self.dataproductclient.create_data_product(ctd_l0_conductivity_output_dp_obj,
outgoing_stream_l0_conductivity_id)
self.output_products['conductivity'] = ctd_l0_conductivity_output_dp_id
ctd_l0_pressure_output_dp_obj = IonObject(RT.DataProduct,
name='L0_Pressure',
description='transform output pressure',
temporal_domain = tdom,
spatial_domain = sdom)
ctd_l0_pressure_output_dp_id = self.dataproductclient.create_data_product(ctd_l0_pressure_output_dp_obj,
outgoing_stream_l0_pressure_id)
self.output_products['pressure'] = ctd_l0_pressure_output_dp_id
ctd_l0_temperature_output_dp_obj = IonObject(RT.DataProduct,
name='L0_Temperature',
description='transform output temperature',
temporal_domain = tdom,
spatial_domain = sdom)
ctd_l0_temperature_output_dp_id = self.dataproductclient.create_data_product(ctd_l0_temperature_output_dp_obj,
outgoing_stream_l0_temperature_id)
self.output_products['temperature'] = ctd_l0_temperature_output_dp_id
#-------------------------------
# Create listener for data process events and verify that events are received.
#-------------------------------
# todo: add this validate for Req: L4-CI-SA-RQ-367 Data processing shall notify registered data product consumers about data processing workflow life cycle events
#todo (contd) ... I believe the capability does not exist yet now. ANS And SA are not yet publishing any workflow life cycle events (Swarbhanu)
#-------------------------------
# L0 Conductivity - Temperature - Pressure: Create the data process
#-------------------------------
ctd_l0_all_data_process_id = self.dataprocessclient.create_data_process(ctd_L0_all_dprocdef_id, [ctd_parsed_data_product], self.output_products)
data_process = self.rrclient.read(ctd_l0_all_data_process_id)
process_id = data_process.process_id
self.addCleanup(self.process_dispatcher.cancel_process, process_id)
#-------------------------------
# Wait until the process launched in the create_data_process() method is actually running, before proceeding further in this test
#-------------------------------
gate = ProcessStateGate(self.process_dispatcher.read_process, process_id, ProcessStateEnum.RUNNING)
self.assertTrue(gate.await(30), "The data process (%s) did not spawn in 30 seconds" % process_id)
#-------------------------------
# Retrieve a list of all data process defintions in RR and validate that the DPD is listed
#-------------------------------
# todo: Req: L4-CI-SA-RQ-366 Data processing shall manage data topic definitions
# todo: data topics are being handled by pub sub at the level of streams
self.dataprocessclient.activate_data_process(ctd_l0_all_data_process_id)
#todo: check that activate event is received L4-CI-SA-RQ-367
#todo... (it looks like no event is being published when the data process is activated... so below, we just check for now
# todo... that the subscription is indeed activated) (Swarbhanu)
# todo: monitor process to see if it is active (sa-rq-182)
ctd_l0_all_data_process = self.rrclient.read(ctd_l0_all_data_process_id)
input_subscription_id = ctd_l0_all_data_process.input_subscription_id
subs = self.rrclient.read(input_subscription_id)
self.assertTrue(subs.activated)
# todo: This has not yet been completed by CEI, will prbly surface thru a DPMS call
self.dataprocessclient.deactivate_data_process(ctd_l0_all_data_process_id)
#-------------------------------
# Retrieve the extended resources for data process definition and for data process
#-------------------------------
extended_process_definition = self.dataprocessclient.get_data_process_definition_extension(ctd_L0_all_dprocdef_id)
self.assertEqual(1, len(extended_process_definition.data_processes))
log.debug("test_createDataProcess: extended_process_definition %s", str(extended_process_definition))
extended_process = self.dataprocessclient.get_data_process_extension(ctd_l0_all_data_process_id)
self.assertEqual(1, len(extended_process.input_data_products))
log.debug("test_createDataProcess: extended_process %s", str(extended_process))
################################ Test the removal of data processes ##################################
#-------------------------------------------------------------------
# Test the deleting of the data process
#-------------------------------------------------------------------
# Before deleting, get the input streams, output streams and the subscriptions so that they can be checked after deleting
# dp_obj_1 = self.rrclient.read(ctd_l0_all_data_process_id)
# input_subscription_id = dp_obj_1.input_subscription_id
# out_prods, _ = self.rrclient.find_objects(subject=ctd_l0_all_data_process_id, predicate=PRED.hasOutputProduct, id_only=True)
# in_prods, _ = self.rrclient.find_objects(ctd_l0_all_data_process_id, PRED.hasInputProduct, id_only=True)
# in_streams = []
# for in_prod in in_prods:
# streams, _ = self.rrclient.find_objects(in_prod, PRED.hasStream, id_only=True)
# in_streams.extend(streams)
# out_streams = []
# for out_prod in out_prods:
# streams, _ = self.rrclient.find_objects(out_prod, PRED.hasStream, id_only=True)
# out_streams.extend(streams)
# Deleting the data process
self.dataprocessclient.delete_data_process(ctd_l0_all_data_process_id)
# Check that the data process got removed. Check the lcs state. It should be retired
dp_obj = self.rrclient.read(ctd_l0_all_data_process_id)
self.assertEquals(dp_obj.lcstate, LCS.RETIRED)
# Check for process defs still attached to the data process
dpd_assn_ids = self.rrclient.find_associations(subject=ctd_l0_all_data_process_id, predicate=PRED.hasProcessDefinition, id_only=True)
self.assertEquals(len(dpd_assn_ids), 0)
# Check for output data product still attached to the data process
out_products, assocs = self.rrclient.find_objects(subject=ctd_l0_all_data_process_id, predicate=PRED.hasOutputProduct, id_only=True)
self.assertEquals(len(out_products), 0)
self.assertEquals(len(assocs), 0)
# Check for input data products still attached to the data process
inprod_associations = self.rrclient.find_associations(ctd_l0_all_data_process_id, PRED.hasInputProduct)
self.assertEquals(len(inprod_associations), 0)
# Check for input data products still attached to the data process
inprod_associations = self.rrclient.find_associations(ctd_l0_all_data_process_id, PRED.hasInputProduct)
self.assertEquals(len(inprod_associations), 0)
# Check of the data process has been deactivated
self.assertIsNone(dp_obj.input_subscription_id)
# Read the original subscription id of the data process and check that it has been deactivated
with self.assertRaises(NotFound):
self.pubsubclient.read_subscription(input_subscription_id)
#-------------------------------------------------------------------
# Delete the data process definition
#-------------------------------------------------------------------
# before deleting, get the process definition being associated to in order to be able to check later if the latter gets deleted as it should
proc_def_ids, proc_def_asocs = self.rrclient.find_objects(ctd_l0_all_data_process_id, PRED.hasProcessDefinition)
self.dataprocessclient.delete_data_process_definition(ctd_L0_all_dprocdef_id)
# check that the data process definition has been retired
dp_proc_def = self.rrclient.read(ctd_L0_all_dprocdef_id)
self.assertEquals(dp_proc_def.lcstate, LCS.RETIRED)
# Check for old associations of this data process definition
proc_defs, proc_def_asocs = self.rrclient.find_objects(ctd_L0_all_dprocdef_id, PRED.hasProcessDefinition)
self.assertEquals(len(proc_defs), 0)
# find all associations where this is the subject
_, obj_assns = self.rrclient.find_objects(subject= ctd_L0_all_dprocdef_id, id_only=True)
self.assertEquals(len(obj_assns), 0)
################################ Test the removal of data processes ##################################
# Try force delete... This should simply delete the associations and the data process object
# from the resource registry
#---------------------------------------------------------------------------------------------------------------
# Force deleting a data process
#---------------------------------------------------------------------------------------------------------------
self.dataprocessclient.force_delete_data_process(ctd_l0_all_data_process_id)
# find all associations where this is the subject
_, obj_assns = self.rrclient.find_objects(subject=ctd_l0_all_data_process_id, id_only=True)
# find all associations where this is the object
_, sbj_assns = self.rrclient.find_subjects(object=ctd_l0_all_data_process_id, id_only=True)
self.assertEquals(len(obj_assns), 0)
self.assertEquals(len(sbj_assns), 0)
with self.assertRaises(NotFound):
self.rrclient.read(ctd_l0_all_data_process_id)
#---------------------------------------------------------------------------------------------------------------
# Force deleting a data process definition
#---------------------------------------------------------------------------------------------------------------
self.dataprocessclient.force_delete_data_process_definition(ctd_L0_all_dprocdef_id)
# find all associations where this is the subject
_, obj_assns = self.rrclient.find_objects(subject=ctd_l0_all_data_process_id, id_only=True)
# find all associations where this is the object
_, sbj_assns = self.rrclient.find_subjects(object=ctd_l0_all_data_process_id, id_only=True)
self.assertEquals(len(obj_assns), 0)
self.assertEquals(len(sbj_assns), 0)
with self.assertRaises(NotFound):
self.rrclient.read(ctd_l0_all_data_process_id)
class TransformManagementServiceIntTest(IonIntegrationTestCase):
def setUp(self):
# set up the container
self._start_container()
self.container.start_rel_from_url('res/deploy/r2dm.yml')
self.pubsub_cli = PubsubManagementServiceClient(node=self.container.node)
self.tms_cli = TransformManagementServiceClient(node=self.container.node)
self.rr_cli = ResourceRegistryServiceClient(node=self.container.node)
self.procd_cli = ProcessDispatcherServiceClient(node=self.container.node)
self.input_stream_id = self.pubsub_cli.create_stream(name='input_stream',original=True)
self.input_subscription_id = self.pubsub_cli.create_subscription(query=StreamQuery(stream_ids=[self.input_stream_id]),exchange_name='transform_input',name='input_subscription')
self.output_stream_id = self.pubsub_cli.create_stream(name='output_stream',original=True)
self.process_definition = ProcessDefinition(name='basic_transform_definition')
self.process_definition.executable = {'module': 'ion.processes.data.transforms.transform_example',
'class':'TransformExample'}
self.process_definition_id = self.procd_cli.create_process_definition(process_definition=self.process_definition)
@attr('LOCOINT')
@unittest.skipIf(os.getenv('CEI_LAUNCH_TEST', False),'Not integrated for CEI')
def test_create_transform(self):
configuration = {'program_args':{'arg1':'value'}}
transform_id = self.tms_cli.create_transform(
name='test_transform',
in_subscription_id=self.input_subscription_id,
out_streams={'output':self.output_stream_id},
process_definition_id=self.process_definition_id)
# test transform creation in rr
transform = self.rr_cli.read(transform_id)
self.assertEquals(transform.name,'test_transform')
# test associations
predicates = [PRED.hasSubscription, PRED.hasOutStream, PRED.hasProcessDefinition]
assocs = []
for p in predicates:
assocs += self.rr_cli.find_associations(transform_id,p,id_only=True)
self.assertEquals(len(assocs),3)
# test process creation
transform = self.tms_cli.read_transform(transform_id)
pid = transform.process_id
proc = self.container.proc_manager.procs.get(pid)
self.assertIsInstance(proc,TransformExample)
# clean up
self.tms_cli.delete_transform(transform_id)
def test_create_transform_no_procdef(self):
with self.assertRaises(NotFound):
self.tms_cli.create_transform(name='test',in_subscription_id=self.input_subscription_id)
def test_create_transform_bad_procdef(self):
with self.assertRaises(NotFound):
self.tms_cli.create_transform(name='test',
in_subscription_id=self.input_subscription_id,
process_definition_id='bad')
def test_create_transform_no_config(self):
transform_id = self.tms_cli.create_transform(
name='test_transform',
in_subscription_id=self.input_subscription_id,
out_streams={'output':self.output_stream_id},
process_definition_id=self.process_definition_id,
)
self.tms_cli.delete_transform(transform_id)
def test_create_transform_name_failure(self):
transform_id = self.tms_cli.create_transform(
name='test_transform',
in_subscription_id=self.input_subscription_id,
out_streams={'output':self.output_stream_id},
process_definition_id=self.process_definition_id,
)
with self.assertRaises(BadRequest):
transform_id = self.tms_cli.create_transform(
name='test_transform',
in_subscription_id=self.input_subscription_id,
out_streams={'output':self.output_stream_id},
process_definition_id=self.process_definition_id,
)
self.tms_cli.delete_transform(transform_id)
@attr('LOCOINT')
@unittest.skipIf(os.getenv('CEI_LAUNCH_TEST', False),'Not integrated for CEI')
def test_create_no_output(self):
transform_id = self.tms_cli.create_transform(
name='test_transform',
in_subscription_id=self.input_subscription_id,
process_definition_id=self.process_definition_id,
)
predicates = [PRED.hasSubscription, PRED.hasOutStream, PRED.hasProcessDefinition]
assocs = []
for p in predicates:
assocs += self.rr_cli.find_associations(transform_id,p,id_only=True)
self.assertEquals(len(assocs),2)
# test process creation
transform = self.tms_cli.read_transform(transform_id)
pid = transform.process_id
proc = self.container.proc_manager.procs.get(pid)
self.assertIsInstance(proc,TransformExample)
self.tms_cli.delete_transform(transform_id)
def test_read_transform_exists(self):
trans_obj = IonObject(RT.Transform,name='trans_obj')
trans_id, _ = self.rr_cli.create(trans_obj)
res = self.tms_cli.read_transform(trans_id)
actual = self.rr_cli.read(trans_id)
self.assertEquals(res._id,actual._id)
def test_read_transform_nonexist(self):
with self.assertRaises(NotFound) as e:
self.tms_cli.read_transform('123')
def test_activate_transform(self):
transform_id = self.tms_cli.create_transform(
name='test_transform',
in_subscription_id=self.input_subscription_id,
out_streams={'output':self.output_stream_id},
process_definition_id=self.process_definition_id
)
self.tms_cli.activate_transform(transform_id)
# pubsub check if activated?
self.tms_cli.delete_transform(transform_id)
def test_activate_transform_nonexist(self):
with self.assertRaises(NotFound):
self.tms_cli.activate_transform('1234')
def test_delete_transform(self):
transform_id = self.tms_cli.create_transform(
name='test_transform',
in_subscription_id=self.input_subscription_id,
process_definition_id=self.process_definition_id
)
self.tms_cli.delete_transform(transform_id)
# assertions
with self.assertRaises(NotFound):
self.rr_cli.read(transform_id)
def test_delete_transform_nonexist(self):
with self.assertRaises(NotFound):
self.tms_cli.delete_transform('123')
def test_execute_transform(self):
# set up
process_definition = ProcessDefinition(name='procdef_execute')
process_definition.executable['module'] = 'ion.processes.data.transforms.transform_example'
process_definition.executable['class'] = 'ReverseTransform'
data = [1,2,3]
process_definition_id, _ = self.rr_cli.create(process_definition)
retval = self.tms_cli.execute_transform(process_definition_id,data)
self.assertEquals(retval,[3,2,1])
def test_integrated_transform(self):
'''
This example script runs a chained three way transform:
B
A <
C
Where A is the even_odd transform (generates a stream of even and odd numbers from input)
and B and C are the basic transforms that receive even and odd input
'''
cc = self.container
assertions = self.assertTrue
pubsub_cli = PubsubManagementServiceClient(node=cc.node)
rr_cli = ResourceRegistryServiceClient(node=cc.node)
tms_cli = TransformManagementServiceClient(node=cc.node)
#-------------------------------
# Process Definition
#-------------------------------
# Create the process definition for the basic transform
process_definition = IonObject(RT.ProcessDefinition, name='basic_transform_definition')
process_definition.executable = {
'module': 'ion.processes.data.transforms.transform_example',
'class':'TransformExample'
}
basic_transform_definition_id, _ = rr_cli.create(process_definition)
# Create The process definition for the TransformEvenOdd
process_definition = IonObject(RT.ProcessDefinition, name='evenodd_transform_definition')
process_definition.executable = {
'module': 'ion.processes.data.transforms.transform_example',
'class':'TransformEvenOdd'
}
evenodd_transform_definition_id, _ = rr_cli.create(process_definition)
#-------------------------------
# Streams
#-------------------------------
streams = [pubsub_cli.create_stream() for i in xrange(5)]
#-------------------------------
# Subscriptions
#-------------------------------
query = StreamQuery(stream_ids=[streams[0]])
input_subscription_id = pubsub_cli.create_subscription(query=query, exchange_name='input_queue')
query = StreamQuery(stream_ids = [streams[1]]) # even output
even_subscription_id = pubsub_cli.create_subscription(query=query, exchange_name='even_queue')
query = StreamQuery(stream_ids = [streams[2]]) # odd output
odd_subscription_id = pubsub_cli.create_subscription(query=query, exchange_name='odd_queue')
#-------------------------------
# Launch the EvenOdd Transform
#-------------------------------
evenodd_id = tms_cli.create_transform(name='even_odd',
in_subscription_id=input_subscription_id,
out_streams={'even':streams[1], 'odd':streams[2]},
process_definition_id=evenodd_transform_definition_id,
configuration={})
tms_cli.activate_transform(evenodd_id)
#-------------------------------
# Launch the Even Processing Transform
#-------------------------------
even_transform_id = tms_cli.create_transform(name='even_transform',
in_subscription_id = even_subscription_id,
out_streams={'even_plus1':streams[3]},
process_definition_id=basic_transform_definition_id,
configuration={})
tms_cli.activate_transform(even_transform_id)
#-------------------------------
# Launch the Odd Processing Transform
#-------------------------------
odd_transform_id = tms_cli.create_transform(name='odd_transform',
in_subscription_id = odd_subscription_id,
out_streams={'odd_plus1':streams[4]},
process_definition_id=basic_transform_definition_id,
configuration={})
tms_cli.activate_transform(odd_transform_id)
#-------------------------------
# Set up final subscribers
#-------------------------------
evenplus1_subscription_id = pubsub_cli.create_subscription(
query=StreamQuery([streams[3]]),
exchange_name='evenplus1_queue',
name='EvenPlus1Subscription',
description='EvenPlus1 SubscriptionDescription'
)
oddplus1_subscription_id = pubsub_cli.create_subscription(
query=StreamQuery([streams[4]]),
exchange_name='oddplus1_queue',
name='OddPlus1Subscription',
description='OddPlus1 SubscriptionDescription'
)
total_msg_count = 2
msgs = gevent.queue.Queue()
def even1_message_received(message, headers):
input = int(message.get('num'))
assertions( (input % 2) ) # Assert it is odd (transform adds 1)
msgs.put(True)
def odd1_message_received(message, headers):
input = int(message.get('num'))
assertions(not (input % 2)) # Assert it is even
msgs.put(True)
subscriber_registrar = StreamSubscriberRegistrar(process=cc, container=cc)
even_subscriber = subscriber_registrar.create_subscriber(exchange_name='evenplus1_queue', callback=even1_message_received)
odd_subscriber = subscriber_registrar.create_subscriber(exchange_name='oddplus1_queue', callback=odd1_message_received)
# Start subscribers
even_subscriber.start()
odd_subscriber.start()
# Activate subscriptions
pubsub_cli.activate_subscription(evenplus1_subscription_id)
pubsub_cli.activate_subscription(oddplus1_subscription_id)
#-------------------------------
# Set up fake stream producer
#-------------------------------
pid = cc.spawn_process(name='dummy_process_for_test',
module='pyon.ion.process',
cls='SimpleProcess',
config={})
dummy_process = cc.proc_manager.procs[pid]
# Normally the user does not see or create the publisher, this is part of the containers business.
# For the test we need to set it up explicitly
publisher_registrar = StreamPublisherRegistrar(process=dummy_process, container=cc)
stream_publisher = publisher_registrar.create_publisher(stream_id=streams[0])
#-------------------------------
# Start test
#-------------------------------
# Publish a stream
for i in xrange(total_msg_count):
stream_publisher.publish({'num':str(i)})
time.sleep(0.5)
for i in xrange(total_msg_count * 2):
try:
msgs.get()
except Empty:
assertions(False, "Failed to process all messages correctly.")
"""
class TestIntDataProcessManagementServiceMultiOut(IonIntegrationTestCase):
def setUp(self):
# Start container
self._start_container()
self.container.start_rel_from_url('res/deploy/r2deploy.yml')
# Now create client to DataProductManagementService
self.rrclient = ResourceRegistryServiceClient(node=self.container.node)
self.damsclient = DataAcquisitionManagementServiceClient(node=self.container.node)
self.pubsubclient = PubsubManagementServiceClient(node=self.container.node)
self.ingestclient = IngestionManagementServiceClient(node=self.container.node)
self.imsclient = InstrumentManagementServiceClient(node=self.container.node)
self.dataproductclient = DataProductManagementServiceClient(node=self.container.node)
self.dataprocessclient = DataProcessManagementServiceClient(node=self.container.node)
self.datasetclient = DatasetManagementServiceClient(node=self.container.node)
self.dataset_management = self.datasetclient
def test_createDataProcess(self):
#---------------------------------------------------------------------------
# Data Process Definition
#---------------------------------------------------------------------------
dpd_obj = IonObject(RT.DataProcessDefinition,
name='ctd_L0_all',
description='transform ctd package into three separate L0 streams',
module='ion.processes.data.transforms.ctd.ctd_L0_all',
class_name='ctd_L0_all')
dprocdef_id = self.dataprocessclient.create_data_process_definition(dpd_obj)
# Make assertion on the newly registered data process definition
data_process_definition = self.rrclient.read(dprocdef_id)
self.assertEquals(data_process_definition.name, 'ctd_L0_all')
self.assertEquals(data_process_definition.description, 'transform ctd package into three separate L0 streams')
self.assertEquals(data_process_definition.module, 'ion.processes.data.transforms.ctd.ctd_L0_all')
self.assertEquals(data_process_definition.class_name, 'ctd_L0_all')
# Read the data process definition using data process management and make assertions
dprocdef_obj = self.dataprocessclient.read_data_process_definition(dprocdef_id)
self.assertEquals(dprocdef_obj.class_name,'ctd_L0_all')
self.assertEquals(dprocdef_obj.module,'ion.processes.data.transforms.ctd.ctd_L0_all')
#---------------------------------------------------------------------------
# Create an input instrument
#---------------------------------------------------------------------------
instrument_obj = IonObject(RT.InstrumentDevice, name='Inst1',description='an instrument that is creating the data product')
instrument_id, rev = self.rrclient.create(instrument_obj)
# Register the instrument so that the data producer and stream object are created
data_producer_id = self.damsclient.register_instrument(instrument_id)
# create a stream definition for the data from the ctd simulator
pdict_id = self.dataset_management.read_parameter_dictionary_by_name('ctd_parsed_param_dict', id_only=True)
ctd_stream_def_id = self.pubsubclient.create_stream_definition(name='Simulated CTD data', parameter_dictionary_id=pdict_id)
self.dataprocessclient.assign_input_stream_definition_to_data_process_definition(ctd_stream_def_id, dprocdef_id )
# Assert that the link between the stream definition and the data process definition was done
assocs = self.rrclient.find_associations(subject=dprocdef_id, predicate=PRED.hasInputStreamDefinition, object=ctd_stream_def_id, id_only=True)
self.assertIsNotNone(assocs)
#---------------------------------------------------------------------------
# Input Data Product
#---------------------------------------------------------------------------
tdom, sdom = time_series_domain()
sdom = sdom.dump()
tdom = tdom.dump()
input_dp_obj = IonObject( RT.DataProduct,
name='InputDataProduct',
description='some new dp',
temporal_domain = tdom,
spatial_domain = sdom)
input_dp_id = self.dataproductclient.create_data_product(data_product=input_dp_obj, stream_definition_id=ctd_stream_def_id, exchange_point='test')
#Make assertions on the input data product created
input_dp_obj = self.rrclient.read(input_dp_id)
self.assertEquals(input_dp_obj.name, 'InputDataProduct')
self.assertEquals(input_dp_obj.description, 'some new dp')
self.damsclient.assign_data_product(instrument_id, input_dp_id)
# Retrieve the stream via the DataProduct->Stream associations
stream_ids, _ = self.rrclient.find_objects(input_dp_id, PRED.hasStream, None, True)
self.in_stream_id = stream_ids[0]
#---------------------------------------------------------------------------
# Output Data Product
#---------------------------------------------------------------------------
outgoing_stream_conductivity_id = self.pubsubclient.create_stream_definition(name='conductivity', parameter_dictionary_id=pdict_id)
self.dataprocessclient.assign_stream_definition_to_data_process_definition(outgoing_stream_conductivity_id, dprocdef_id,binding='conductivity' )
outgoing_stream_pressure_id = self.pubsubclient.create_stream_definition(name='pressure', parameter_dictionary_id=pdict_id)
self.dataprocessclient.assign_stream_definition_to_data_process_definition(outgoing_stream_pressure_id, dprocdef_id, binding='pressure' )
outgoing_stream_temperature_id = self.pubsubclient.create_stream_definition(name='temperature', parameter_dictionary_id=pdict_id)
self.dataprocessclient.assign_stream_definition_to_data_process_definition(outgoing_stream_temperature_id, dprocdef_id, binding='temperature' )
self.output_products={}
output_dp_obj = IonObject(RT.DataProduct,
name='conductivity',
description='transform output conductivity',
temporal_domain = tdom,
spatial_domain = sdom)
output_dp_id_1 = self.dataproductclient.create_data_product(output_dp_obj, outgoing_stream_conductivity_id)
self.output_products['conductivity'] = output_dp_id_1
output_dp_obj = IonObject(RT.DataProduct,
name='pressure',
description='transform output pressure',
temporal_domain = tdom,
spatial_domain = sdom)
output_dp_id_2 = self.dataproductclient.create_data_product(output_dp_obj, outgoing_stream_pressure_id)
self.output_products['pressure'] = output_dp_id_2
output_dp_obj = IonObject(RT.DataProduct,
name='temperature',
description='transform output ',
temporal_domain = tdom,
spatial_domain = sdom)
output_dp_id_3 = self.dataproductclient.create_data_product(output_dp_obj, outgoing_stream_temperature_id)
self.output_products['temperature'] = output_dp_id_3
#---------------------------------------------------------------------------
# Create the data process
#---------------------------------------------------------------------------
def _create_data_process():
dproc_id = self.dataprocessclient.create_data_process(dprocdef_id, [input_dp_id], self.output_products)
return dproc_id
dproc_id = _create_data_process()
# Make assertions on the data process created
data_process = self.dataprocessclient.read_data_process(dproc_id)
# Assert that the data process has a process id attached
self.assertIsNotNone(data_process.process_id)
# Assert that the data process got the input data product's subscription id attached as its own input_susbcription_id attribute
self.assertIsNotNone(data_process.input_subscription_id)
output_data_product_ids = self.rrclient.find_objects(subject=dproc_id, predicate=PRED.hasOutputProduct, object_type=RT.DataProduct, id_only=True)
self.assertEquals(Set(output_data_product_ids[0]), Set([output_dp_id_1,output_dp_id_2,output_dp_id_3]))
@patch.dict(CFG, {'endpoint':{'receive':{'timeout': 60}}})
def test_createDataProcessUsingSim(self):
#-------------------------------
# Create InstrumentModel
#-------------------------------
instModel_obj = IonObject(RT.InstrumentModel, name='SBE37IMModel', description="SBE37IMModel" )
instModel_id = self.imsclient.create_instrument_model(instModel_obj)
#-------------------------------
# Create InstrumentAgent
#-------------------------------
instAgent_obj = IonObject(RT.InstrumentAgent, name='agent007', description="SBE37IMAgent", driver_module="mi.instrument.seabird.sbe37smb.ooicore.driver", driver_class="SBE37Driver" )
instAgent_id = self.imsclient.create_instrument_agent(instAgent_obj)
self.imsclient.assign_instrument_model_to_instrument_agent(instModel_id, instAgent_id)
#-------------------------------
# Create InstrumentDevice
#-------------------------------
instDevice_obj = IonObject(RT.InstrumentDevice, name='SBE37IMDevice', description="SBE37IMDevice", serial_number="12345" )
instDevice_id = self.imsclient.create_instrument_device(instrument_device=instDevice_obj)
self.imsclient.assign_instrument_model_to_instrument_device(instModel_id, instDevice_id)
#-------------------------------
# Create InstrumentAgentInstance to hold configuration information
#-------------------------------
port_agent_config = {
'device_addr': 'sbe37-simulator.oceanobservatories.org',
'device_port': 4001,
'process_type': PortAgentProcessType.UNIX,
'binary_path': "port_agent",
'command_port': 4002,
'data_port': 4003,
'log_level': 5,
}
instAgentInstance_obj = IonObject(RT.InstrumentAgentInstance, name='SBE37IMAgentInstance', description="SBE37IMAgentInstance", svr_addr="localhost",
comms_device_address=CFG.device.sbe37.host, comms_device_port=CFG.device.sbe37.port,
port_agent_config = port_agent_config)
instAgentInstance_id = self.imsclient.create_instrument_agent_instance(instAgentInstance_obj, instAgent_id, instDevice_id)
#-------------------------------
# Create CTD Parsed as the first data product
#-------------------------------
# create a stream definition for the data from the ctd simulator
pdict_id = self.dataset_management.read_parameter_dictionary_by_name('ctd_parsed_param_dict', id_only=True)
ctd_stream_def_id = self.pubsubclient.create_stream_definition(name='SBE32_CDM', parameter_dictionary_id=pdict_id)
# Construct temporal and spatial Coordinate Reference System objects
tdom, sdom = time_series_domain()
sdom = sdom.dump()
tdom = tdom.dump()
dp_obj = IonObject(RT.DataProduct,
name='ctd_parsed',
description='ctd stream test',
temporal_domain = tdom,
spatial_domain = sdom)
ctd_parsed_data_product = self.dataproductclient.create_data_product(dp_obj, ctd_stream_def_id)
self.damsclient.assign_data_product(input_resource_id=instDevice_id, data_product_id=ctd_parsed_data_product)
# Retrieve the id of the OUTPUT stream from the out Data Product
stream_ids, _ = self.rrclient.find_objects(ctd_parsed_data_product, PRED.hasStream, None, True)
#-------------------------------
# Create CTD Raw as the second data product
#-------------------------------
raw_stream_def_id = self.pubsubclient.create_stream_definition(name='SBE37_RAW', parameter_dictionary_id=pdict_id)
dp_obj.name = 'ctd_raw'
ctd_raw_data_product = self.dataproductclient.create_data_product(dp_obj, raw_stream_def_id)
self.damsclient.assign_data_product(input_resource_id=instDevice_id, data_product_id=ctd_raw_data_product)
# Retrieve the id of the OUTPUT stream from the out Data Product
stream_ids, _ = self.rrclient.find_objects(ctd_raw_data_product, PRED.hasStream, None, True)
#-------------------------------
# L0 Conductivity - Temperature - Pressure: Data Process Definition
#-------------------------------
dpd_obj = IonObject(RT.DataProcessDefinition,
name='ctd_L0_all',
description='transform ctd package into three separate L0 streams',
module='ion.processes.data.transforms.ctd.ctd_L0_all',
class_name='ctd_L0_all')
ctd_L0_all_dprocdef_id = self.dataprocessclient.create_data_process_definition(dpd_obj)
#-------------------------------
# L0 Conductivity - Temperature - Pressure: Output Data Products
#-------------------------------
outgoing_stream_l0_conductivity_id = self.pubsubclient.create_stream_definition(name='L0_Conductivity', parameter_dictionary_id=pdict_id)
self.dataprocessclient.assign_stream_definition_to_data_process_definition(outgoing_stream_l0_conductivity_id, ctd_L0_all_dprocdef_id, binding='conductivity' )
outgoing_stream_l0_pressure_id = self.pubsubclient.create_stream_definition(name='L0_Pressure', parameter_dictionary_id=pdict_id)
self.dataprocessclient.assign_stream_definition_to_data_process_definition(outgoing_stream_l0_pressure_id, ctd_L0_all_dprocdef_id, binding='pressure' )
outgoing_stream_l0_temperature_id = self.pubsubclient.create_stream_definition(name='L0_Temperature', parameter_dictionary_id=pdict_id)
self.dataprocessclient.assign_stream_definition_to_data_process_definition(outgoing_stream_l0_temperature_id, ctd_L0_all_dprocdef_id, binding='temperature' )
self.output_products={}
ctd_l0_conductivity_output_dp_obj = IonObject( RT.DataProduct,
name='L0_Conductivity',
description='transform output conductivity',
temporal_domain = tdom,
spatial_domain = sdom)
ctd_l0_conductivity_output_dp_id = self.dataproductclient.create_data_product(ctd_l0_conductivity_output_dp_obj,
outgoing_stream_l0_conductivity_id)
self.output_products['conductivity'] = ctd_l0_conductivity_output_dp_id
ctd_l0_pressure_output_dp_obj = IonObject(RT.DataProduct,
name='L0_Pressure',
description='transform output pressure',
temporal_domain = tdom,
spatial_domain = sdom)
ctd_l0_pressure_output_dp_id = self.dataproductclient.create_data_product(ctd_l0_pressure_output_dp_obj,
outgoing_stream_l0_pressure_id)
self.output_products['pressure'] = ctd_l0_pressure_output_dp_id
ctd_l0_temperature_output_dp_obj = IonObject(RT.DataProduct,
name='L0_Temperature',
description='transform output temperature',
temporal_domain = tdom,
spatial_domain = sdom)
ctd_l0_temperature_output_dp_id = self.dataproductclient.create_data_product(ctd_l0_temperature_output_dp_obj,
outgoing_stream_l0_temperature_id)
self.output_products['temperature'] = ctd_l0_temperature_output_dp_id
#-------------------------------
# Create listener for data process events and verify that events are received.
#-------------------------------
# todo: add this validate for Req: L4-CI-SA-RQ-367 Data processing shall notify registered data product consumers about data processing workflow life cycle events
#todo (contd) ... I believe the capability does not exist yet now. ANS And SA are not yet publishing any workflow life cycle events (Swarbhanu)
#-------------------------------
# L0 Conductivity - Temperature - Pressure: Create the data process
#-------------------------------
ctd_l0_all_data_process_id = self.dataprocessclient.create_data_process(ctd_L0_all_dprocdef_id, [ctd_parsed_data_product], self.output_products)
#-------------------------------
# Retrieve a list of all data process defintions in RR and validate that the DPD is listed
#-------------------------------
# todo: add this validate for Req: L4-CI-SA-RQ-366 Data processing shall manage data topic definitions
# todo: This capability is not yet completed (Swarbhanu)
self.dataprocessclient.activate_data_process(ctd_l0_all_data_process_id)
#todo: check that activate event is received L4-CI-SA-RQ-367
#todo... (it looks like no event is being published when the data process is activated... so below, we just check for now
# todo... that the subscription is indeed activated) (Swarbhanu)
# todo: monitor process to see if it is active (sa-rq-182)
ctd_l0_all_data_process = self.rrclient.read(ctd_l0_all_data_process_id)
input_subscription_id = ctd_l0_all_data_process.input_subscription_id
subs = self.rrclient.read(input_subscription_id)
self.assertTrue(subs.activated)
# todo: This has not yet been completed by CEI, will prbly surface thru a DPMS call
self.dataprocessclient.deactivate_data_process(ctd_l0_all_data_process_id)
#-------------------------------
# Retrieve the extended resources for data process definition and for data process
#-------------------------------
extended_process_definition = self.dataprocessclient.get_data_process_definition_extension(ctd_L0_all_dprocdef_id)
self.assertEqual(1, len(extended_process_definition.data_processes))
log.debug("test_createDataProcess: extended_process_definition %s", str(extended_process_definition))
extended_process = self.dataprocessclient.get_data_process_extension(ctd_l0_all_data_process_id)
self.assertEqual(1, len(extended_process.input_data_products))
log.debug("test_createDataProcess: extended_process %s", str(extended_process))
#-------------------------------
# Cleanup
#-------------------------------
self.dataprocessclient.delete_data_process(ctd_l0_all_data_process_id)
self.dataprocessclient.delete_data_process_definition(ctd_L0_all_dprocdef_id)
self.dataprocessclient.force_delete_data_process(ctd_l0_all_data_process_id)
self.dataprocessclient.force_delete_data_process_definition(ctd_L0_all_dprocdef_id)
class TransformManagementServiceIntTest(IonIntegrationTestCase):
def setUp(self):
# set up the container
self._start_container()
self.cc = ContainerAgentClient(node=self.container.node,name=self.container.name)
self.cc.start_rel_from_url('res/deploy/r2deploy.yml')
self.pubsub_cli = PubsubManagementServiceClient(node=self.cc.node)
self.tms_cli = TransformManagementServiceClient(node=self.cc.node)
self.rr_cli = ResourceRegistryServiceClient(node=self.cc.node)
self.input_stream = IonObject(RT.Stream,name='ctd1 output', description='output from a ctd')
self.input_stream.original = True
self.input_stream.mimetype = 'hdf'
self.input_stream_id = self.pubsub_cli.create_stream(self.input_stream)
self.input_subscription = IonObject(RT.Subscription,name='ctd1 subscription', description='subscribe to this if you want ctd1 data')
self.input_subscription.query['stream_id'] = self.input_stream_id
self.input_subscription.exchange_name = 'a queue'
self.input_subscription_id = self.pubsub_cli.create_subscription(self.input_subscription)
self.output_stream = IonObject(RT.Stream,name='transform output', description='output from the transform process')
self.output_stream.original = True
self.output_stream.mimetype='raw'
self.output_stream_id = self.pubsub_cli.create_stream(self.output_stream)
self.process_definition = IonObject(RT.ProcessDefinition,name='transform_process')
self.process_definition.executable = {'module': 'ion.services.dm.transformation.example.transform_example',
'class':'TransformExample'}
self.process_definition_id, _= self.rr_cli.create(self.process_definition)
def test_create_transform(self):
configuration = {'program_args':{'arg1':'value'}}
transform_id = self.tms_cli.create_transform(
name='test_transform',
in_subscription_id=self.input_subscription_id,
out_streams={'output':self.output_stream_id},
process_definition_id=self.process_definition_id)
# test transform creation in rr
transform = self.rr_cli.read(transform_id)
self.assertEquals(transform.name,'test_transform')
# test associations
predicates = [AT.hasSubscription, AT.hasOutStream, AT.hasProcessDefinition]
assocs = []
for p in predicates:
assocs += self.rr_cli.find_associations(transform_id,p,id_only=True)
self.assertEquals(len(assocs),3)
# test process creation
transform = self.tms_cli.read_transform(transform_id)
pid = transform.process_id
proc = self.container.proc_manager.procs[pid]
self.assertTrue(isinstance(proc,TransformExample))
def test_create_transform_no_procdef(self):
with self.assertRaises(NotFound):
self.tms_cli.create_transform(name='test',in_subscription_id=self.input_subscription_id)
def test_create_transform_bad_procdef(self):
with self.assertRaises(NotFound):
self.tms_cli.create_transform(name='test',
in_subscription_id=self.input_subscription_id,
process_definition_id='bad')
def test_create_transform_no_config(self):
transform_id = self.tms_cli.create_transform(
name='test_transform',
in_subscription_id=self.input_subscription_id,
out_streams={'output':self.output_stream_id},
process_definition_id=self.process_definition_id,
)
def test_create_transform_name_failure(self):
transform_id = self.tms_cli.create_transform(
name='test_transform',
in_subscription_id=self.input_subscription_id,
out_streams={'output':self.output_stream_id},
process_definition_id=self.process_definition_id,
)
with self.assertRaises(BadRequest):
transform_id = self.tms_cli.create_transform(
name='test_transform',
in_subscription_id=self.input_subscription_id,
out_streams={'output':self.output_stream_id},
process_definition_id=self.process_definition_id,
)
def test_create_no_output(self):
transform_id = self.tms_cli.create_transform(
name='test_transform',
in_subscription_id=self.input_subscription_id,
process_definition_id=self.process_definition_id,
)
predicates = [AT.hasSubscription, AT.hasOutStream, AT.hasProcessDefinition]
assocs = []
for p in predicates:
assocs += self.rr_cli.find_associations(transform_id,p,id_only=True)
self.assertEquals(len(assocs),2)
# test process creation
transform = self.tms_cli.read_transform(transform_id)
pid = transform.process_id
proc = self.container.proc_manager.procs[pid]
self.assertTrue(isinstance(proc,TransformExample))
def test_read_transform_exists(self):
trans_obj = IonObject(RT.Transform,name='trans_obj')
trans_id, _ = self.rr_cli.create(trans_obj)
res = self.tms_cli.read_transform(trans_id)
actual = self.rr_cli.read(trans_id)
self.assertEquals(res._id,actual._id)
def test_read_transform_nonexist(self):
with self.assertRaises(NotFound) as e:
res = self.tms_cli.read_transform('123')
def test_activate_transform(self):
transform_id = self.tms_cli.create_transform(
name='test_transform',
in_subscription_id=self.input_subscription_id,
out_streams={'output':self.output_stream_id},
process_definition_id=self.process_definition_id
)
self.tms_cli.activate_transform(transform_id)
# pubsub check if activated?
def test_activate_transform_nonexist(self):
with self.assertRaises(NotFound):
self.tms_cli.activate_transform('1234')
def test_delete_transform(self):
transform_id = self.tms_cli.create_transform(
name='test_transform',
in_subscription_id=self.input_subscription_id,
process_definition_id=self.process_definition_id
)
self.tms_cli.delete_transform(transform_id)
# assertions
with self.assertRaises(NotFound):
self.rr_cli.read(transform_id)
def test_delete_transform_nonexist(self):
with self.assertRaises(NotFound):
self.tms_cli.delete_transform('123')
