instance_setup_em_delete = RepositoryResource(None, "Test_for_deletion")
instance_actual_em_delete_uuid = dvid.create_project(instance_setup_em_delete)
instance_actual_em_delete = dvid.delete_project(instance_setup_em_delete)
print("Successfully deleted Repo project: {}".format(
instance_actual_em_delete_uuid))
# Delete the data instance of a repo
instance_setup_em_delete = DataInstanceResource(DATA_INSTANCE,
None,
"uint8blk",
ALIAS,
"Example channel.",
datatype="uint8")
instance_actual_em_delete_uuid = dvid.create_project(instance_setup_em_delete)
dvid.delete_project(
dvid.get_instance(instance_actual_em_delete_uuid, DATA_INSTANCE))
print("Successfully deleted data instance project: {}".format(
instance_actual_em_delete_uuid))
########### Test Versioning API ###########
# Set up a new project with a channel
instance_setup_merge = DataInstanceResource(
DATA_INSTANCE + "_the_second",
None,
"uint8blk",
"Mege_repo",
"Example channel.",
datatype="uint8",
)
from intern.remote.boss import BossRemote
from intern.remote.dvid import DVIDRemote
from intern.resource.boss.resource import *
import matplotlib.pyplot as plt
import numpy as np
# Define the BOSS remote
rmt = BossRemote({"protocol": "https", "host": "api.bossdb.io", "token": "public"})
ANN_COLL_NAME = "allan_johnson"
ANN_EXP_NAME = "gaj_17_40"
experiment = rmt.get_experiment(ANN_COLL_NAME, ANN_EXP_NAME)
print("Boss experiment extents: {}".format(rmt.get_extents(experiment)))
# Define the DVID remote
dvid = DVIDRemote({"protocol": "https", "host": "emdata.janelia.org",})
uuid = "822524777d3048b8bd520043f90c1d28"
name = "grayscale"
annos_name = "groundtruth"
print(
"DVID data instance extents: {}".format(
dvid.get_extents(dvid.get_instance(uuid, name, datatype="uint8"))
)
)
from intern.remote.dvid import DVIDRemote
import matplotlib.pyplot as plt
import numpy as np
# DVID Data fetch:
# Define the remote
dvid = DVIDRemote({
"protocol": "https",
"host": "emdata.janelia.org",
})
uuid = "822524777d3048b8bd520043f90c1d28"
name = "grayscale"
annos_name = "groundtruth"
print(dvid.get_extents(dvid.get_instance(uuid, name, datatype="uint8")))
# get cutout from actual dataset
volumeD = dvid.get_cutout(
dvid.get_instance(uuid, name, datatype="uint8"),
0,
[3000, 3150],
[3000, 3150],
[2000, 2010],
)
# get annotations from dataset
annosD = dvid.get_cutout(
dvid.get_instance(uuid, annos_name, datatype="uint64"),
0,
[3000, 3150],