def check_inputs(self, ekey):
""" Check which input files/lists do not exist """
self.start_exec_task('check_inputs')
existfiles = {}
ins, _ = intgmisc.get_fullnames(self.inputwcl,
self.inputwcl,
ekey,
get_outputs=False)
for sect in ins:
exists, missing = intgmisc.check_files(ins[sect])
existfiles[sect] = exists
if missing:
for mfile in missing:
miscutils.fwdebug_print(
f"ERROR: input '{mfile}' does not exist.",
WRAPPER_OUTPUT_PREFIX)
os.system("pwd")
os.system("find . -type f")
sys.exit(3)
#raise IOError("At least one input file not found.") # if missing inputs, just abort
self.end_exec_task(0)
return existfiles
def check_inputs(self, ekey):
""" Check which input files/lists do not exist
Parameters
----------
ekey : str
The section of the WCL to look in.
Returns
-------
list
The input files that were found.
"""
self.start_exec_task('check_inputs')
existfiles = {}
ins, _ = intgmisc.get_fullnames(self.inputwcl, self.inputwcl, ekey)
for sect in ins:
exists, missing = intgmisc.check_files(ins[sect])
existfiles[sect] = exists
if missing:
for mfile in missing:
miscutils.fwdebug_print(
"ERROR: input '%s' does not exist." % mfile,
WRAPPER_OUTPUT_PREFIX)
os.system("pwd")
os.system("find . -type f")
sys.exit(3)
#raise IOError("At least one input file not found.") # if missing inputs, just abort
self.end_exec_task(0)
return existfiles
def check_outputs(self, ekey, exitcode):
""" Check which output files were created, renaming if necessary """
if miscutils.fwdebug_check(3, 'BASICWRAP_DEBUG'):
miscutils.fwdebug_print("INFO: Beg", WRAPPER_OUTPUT_PREFIX)
self.start_exec_task('check_outputs')
existfiles = {}
missingfiles = {}
_, outs = intgmisc.get_fullnames(self.inputwcl, self.inputwcl, ekey)
for sect in outs:
if miscutils.fwdebug_check(3, 'BASICWRAP_DEBUG'):
miscutils.fwdebug_print(f"INFO: sect={sect}",
WRAPPER_OUTPUT_PREFIX)
exists, missing = intgmisc.check_files(outs[sect])
existfiles.update({sect: exists})
if missing:
optout = self.get_optout(sect)
if optout:
if miscutils.fwdebug_check(3, 'BASICWRAP_DEBUG'):
miscutils.fwdebug_print(
f"\tINFO: optional output file '{missing}' does not exist (sect: {sect}).",
WRAPPER_OUTPUT_PREFIX)
elif exitcode != 0:
if miscutils.fwdebug_check(6, 'BASICWRAP_DEBUG'):
miscutils.fwdebug_print(
f"INFO: skipping missing output due to non-zero exit code ({sect}: {missing})",
WRAPPER_OUTPUT_PREFIX)
else:
miscutils.fwdebug_print(
f"ERROR: Missing required output file(s) ({sect}:{missing})",
WRAPPER_OUTPUT_PREFIX)
missingfiles.update({sect: missing})
if miscutils.fwdebug_check(6, 'BASICWRAP_DEBUG'):
miscutils.fwdebug_print(f"INFO: existfiles={existfiles}",
WRAPPER_OUTPUT_PREFIX)
miscutils.fwdebug_print(f"INFO: missingfiles={missingfiles}",
WRAPPER_OUTPUT_PREFIX)
if miscutils.fwdebug_check(3, 'BASICWRAP_DEBUG'):
miscutils.fwdebug_print("INFO: end", WRAPPER_OUTPUT_PREFIX)
if missingfiles:
status = 1
else:
status = 0
self.end_exec_task(status)
return existfiles
def check_outputs(self, ekey, exitcode):
""" Check which output files were created, renaming if necessary
Parameters
----------
ekey : str
The exec section to use from the WCL
exitcode : int
The exit code of the executable run
Returns
-------
dict
Dictionary containing the files that exist and some descriptor
information
"""
if miscutils.fwdebug_check(3, 'BASICWRAP_DEBUG'):
miscutils.fwdebug_print("INFO: Beg", WRAPPER_OUTPUT_PREFIX)
self.start_exec_task('check_outputs')
existfiles = {}
missingfiles = {}
_, outs = intgmisc.get_fullnames(self.inputwcl, self.inputwcl, ekey)
for sect in outs:
if miscutils.fwdebug_check(3, 'BASICWRAP_DEBUG'):
miscutils.fwdebug_print("INFO: sect=%s" % sect,
WRAPPER_OUTPUT_PREFIX)
exists, missing = intgmisc.check_files(outs[sect])
existfiles.update({sect: exists})
if missing:
optout = self.get_optout(sect)
if optout:
if miscutils.fwdebug_check(3, 'BASICWRAP_DEBUG'):
miscutils.fwdebug_print("\tINFO: optional output file '%s' does not exist (sect: %s)." % \
(missing, sect), WRAPPER_OUTPUT_PREFIX)
elif exitcode != 0:
if miscutils.fwdebug_check(6, 'BASICWRAP_DEBUG'):
miscutils.fwdebug_print(
"INFO: skipping missing output due to non-zero exit code (%s: %s)"
% (sect, missing), WRAPPER_OUTPUT_PREFIX)
else:
miscutils.fwdebug_print(
"ERROR: Missing required output file(s) (%s:%s)" %
(sect, missing), WRAPPER_OUTPUT_PREFIX)
missingfiles.update({sect: missing})
if miscutils.fwdebug_check(6, 'BASICWRAP_DEBUG'):
miscutils.fwdebug_print("INFO: existfiles=%s" % existfiles,
WRAPPER_OUTPUT_PREFIX)
miscutils.fwdebug_print("INFO: missingfiles=%s" % missingfiles,
WRAPPER_OUTPUT_PREFIX)
if miscutils.fwdebug_check(3, 'BASICWRAP_DEBUG'):
miscutils.fwdebug_print("INFO: end", WRAPPER_OUTPUT_PREFIX)
if missingfiles:
status = 1
else:
status = 0
self.end_exec_task(status)
return existfiles