msg( "Unknown format %s." % format )
sys.exit(1)
# make sure it exists
if not os.path.exists( inputFilename ):
msg( "Can't find (or access) file '%s'" % inputFilename )
sys.exit(1)
if len(sys.argv) == 4:
outFilename = sys.argv[3]
else:
outFilename = misc.MakeFilename(inputFilename, '.'+format)
return format,inputFilename,outFilename
if __name__ == '__main__':
setPrescriptDir()
(format,inputFilename,outFilename) = checkParams(sys.argv)
# Real work begins
frags = io.readFragments(inputFilename)
document = process.assembleDocument( frags )
# del frags # Uncomment this if you are low on memory
process.preprocessDocument( document )
predict.predictDocument( document )
if format == 'arff':
io.applyHandcheck( inputFilename, document )
io.renderDocument( makeFormatter(outFilename, format), document )
def profread(fn):
global frags
frags = io.readFragments(fn)