def load_model(): tk.withdraw() try: global label_model label_model=load_iso2flux_model(gui=True) tk.destroy() except: pass
print "file_name",file_name if ".iso2flux" not in file_name: file_name+=".iso2flux" if output_prefix==None: output_prefix=file_name.split("/")[-1].replace(".iso2flux","") label_model=load_iso2flux_model(file_name) #lb_list,ub_list=get_variable_bounds(label_model,max_flux=1e6) print flux_penalty_file """ default_name_flux_dict=file_name.replace(".iso2flux","_flux_penalty.csv") if flux_penalty_file==None: flux_penalty={} #Try to see if the flux_penalty dict saved with the default name exists else: print "loading "+flux_penalty_file flux_penalty_dict=read_flux_penalty_dict_from_file(flux_penalty_file) """ """
print "file_name",file_name if ".iso2flux" not in file_name: file_name+=".iso2flux" if output_prefix==None: output_prefix=file_name.split("/")[-1].replace(".iso2flux","") label_model=load_iso2flux_model(file_name) default_name_flux_dict=file_name.replace(".iso2flux","_flux_penalty.csv") if flux_penalty_file==None: #Try to see if the flux_penalty dict saved with the default name exists try: flux_penalty_dict=read_flux_penalty_dict_from_file(default_name_flux_dict) except: raise Exception("Flux penalty for "+file_name+" "+default_name_flux_dict+" not found" ) else: print "loading "+flux_penalty_file flux_penalty_dict=read_flux_penalty_dict_from_file(flux_penalty_file)