def load_model():
tk.withdraw()
try:
global label_model
label_model=load_iso2flux_model(gui=True)
tk.destroy()
except:
pass
print "file_name",file_name
if ".iso2flux" not in file_name:
file_name+=".iso2flux"
if output_prefix==None:
output_prefix=file_name.split("/")[-1].replace(".iso2flux","")
label_model=load_iso2flux_model(file_name)
#lb_list,ub_list=get_variable_bounds(label_model,max_flux=1e6)
print flux_penalty_file
"""
default_name_flux_dict=file_name.replace(".iso2flux","_flux_penalty.csv")
if flux_penalty_file==None:
flux_penalty={}
#Try to see if the flux_penalty dict saved with the default name exists
else:
print "loading "+flux_penalty_file
flux_penalty_dict=read_flux_penalty_dict_from_file(flux_penalty_file)
"""
"""
print "file_name",file_name
if ".iso2flux" not in file_name:
file_name+=".iso2flux"
if output_prefix==None:
output_prefix=file_name.split("/")[-1].replace(".iso2flux","")
label_model=load_iso2flux_model(file_name)
default_name_flux_dict=file_name.replace(".iso2flux","_flux_penalty.csv")
if flux_penalty_file==None:
#Try to see if the flux_penalty dict saved with the default name exists
try:
flux_penalty_dict=read_flux_penalty_dict_from_file(default_name_flux_dict)
except:
raise Exception("Flux penalty for "+file_name+" "+default_name_flux_dict+" not found" )
else:
print "loading "+flux_penalty_file
flux_penalty_dict=read_flux_penalty_dict_from_file(flux_penalty_file)