rem2del_junk2 = False
if w != None:
d2 = ivlad.getout('sfget', ['parform=n','d2'], inp, verb)
d2 = float(d2) * (n2-1)/float(w-1)
out_transp1 = tmp + '3'
sf.transp(out_remap1, out_transp1, verb=verb)
if rem2del_junk2:
sf.rm(out_remap1, verb)
if w < n2:
ready_for_remap_2 = tmp + '4'
sf.bandpass(out_transp1, ready_for_remap_2, fhi=0.5/d2, verb=verb)
rem2del_junk4 = True
else:
ready_for_remap_2 = out_transp1
rem2del_junk4 = False
ready_for_transp2 = tmp + '5'
sf.remap1(ready_for_remap_2,ready_for_transp2,n1=w,d1=d2,verb=verb)
sf.rm(out_transp1, verb)
if rem2del_junk4:
sf.rm(ready_for_remap_2, verb)
sf.transp(ready_for_transp2, out, verb=verb)
sf.rm(ready_for_transp2, verb)
return ivlad.unix_success
###############################################################################
if __name__ == '__main__':
ivlad.run(main, ['inp','out'])
f = 0
for i in range(nslices_whole):
i_str = ivlad.add_zeros(i,nslices_whole)
i_slc = os.path.join(outdir, i_str + '_stdout' + ivlad.ext)
cmd = '<%s sfwindow f%s=%d ' % (inp, lastdim,f)
cmd += 'n%s=%d %s > %s' % (lastdim, nthick, dpath, i_slc)
ivlad.exe(cmd, verb)
f += nthick
ist = n - nslices_whole * nthick # Incomplete Slice Thickness
if ist > 0:
i_str = ivlad.add_zeros(i+1,nslices_whole)
i_slc = os.path.join(outdir, i_str + '_stdout' + ivlad.ext)
cmd = '<%s sfwindow f%s=%d ' % (inp, lastdim, f)
cmd += 'n%s=%d > %s' % (lastdim, ist, i_slc)
ivlad.exe(cmd, verb)
return ivlad.unix_success
##############################################
if __name__ == '__main__':
ivlad.run(main, ['inp'])
d2 = float(d2) * (n2 - 1) / float(w - 1)
out_transp1 = tmp + '3'
sf.transp(out_remap1, out_transp1, verb=verb)
if rem2del_junk2:
sf.rm(out_remap1, verb)
if w < n2:
ready_for_remap_2 = tmp + '4'
sf.bandpass(out_transp1,
ready_for_remap_2,
fhi=0.5 / d2,
verb=verb)
rem2del_junk4 = True
else:
ready_for_remap_2 = out_transp1
rem2del_junk4 = False
ready_for_transp2 = tmp + '5'
sf.remap1(ready_for_remap_2, ready_for_transp2, n1=w, d1=d2, verb=verb)
sf.rm(out_transp1, verb)
if rem2del_junk4:
sf.rm(ready_for_remap_2, verb)
sf.transp(ready_for_transp2, out, verb=verb)
sf.rm(ready_for_transp2, verb)
return ivlad.unix_success
###############################################################################
if __name__ == '__main__':
ivlad.run(main, ['inp', 'out'])
recursive = par.bool('rec', False) # Whether to go down recursively
chk4nan = par.bool('chk4nan', False) # Check for NaN values. Expensive!!
invalid_files_list = [] # will contain tuples: (file, msg)
if recursive:
for root, dirs, files in os.walk(mydir):
invalid_files_list += \
ivlad.list_invalid_rsf_files(root, files, chk4nan)
else:
files = filter(lambda x: os.path.isfile(x), os.listdir(mydir))
invalid_files_list += \
ivlad.list_invalid_rsf_files(mydir, files, chk4nan)
myline = ''
for entry in invalid_files_list:
myline = entry[0]
if verb:
myline += ': ' + entry[1]
print(
myline) # This program's stdout is a list of files. Do not use msg
return ivlad.unix_success
###############################################################################
if __name__ == '__main__':
ivlad.run(main)
valid_files_list += \
ivlad.list_valid_rsf_files(mydir, files, chk4nan=False)
for f in valid_files_list:
ivlad.msg(f + ': ' + ivlad.getout('sfin', ['info=n', f]), verb)
sf.rm(f, verb)
# Clean up headers with no binaries
if recursive:
hdr_str = ivlad.getout('find',
[mydir, '-type', 'f', '-name', '"*.rsf"'])
hdr_list = hdr_str.split('\n')
else:
hdr_list = [
x for x in glob.glob(os.path.join(mydir, '*.rsf'))
if os.path.isfile(x)
]
for f in hdr_list:
ivlad.msg(f)
os.remove(f)
return ivlad.unix_success
###############################################################################
if __name__ == '__main__':
ivlad.run(main, ['dir'])
except: # Use distributed version
import rsf.user.ivlad as ivlad
###############################################################################
def main(par):
prog = par.string('prog') # Non-madagascar utility
inp = par.string('inp') # Input file
tpar_str = par.string('tpar') # Translated params, i.e.: "ni1=n1 ni2=n2"
ipar_str = par.string('ipar') # Independent params, i.e. "perc=100 cmap=rgb"
verb = par.bool('verb',False)
tpar_out = ''
if tpar_str != None:
for tpar in tpar_str.split():
thispar = tpar.split('=')
tpar_out += thispar[0] + '=' + \
ivlad.getout('sfget', ['parform=n', thispar[1]], inp, verb) +' '
data = ivlad.getout('sfin',['info=n',inp])
ivlad.exe(prog + ' <' + data + ' ' + tpar_out + ' ' + ipar_str, verb)
return ivlad.unix_success
##############################################
if __name__ == '__main__':
ivlad.run(main, ['prog', 'inp'])
def main(par):
f1 = sys.argv[1] + ' '
f2 = sys.argv[2]
f1_type = ivlad.getout('sfgettype', stdin=f1)
if f1_type != 'SF_FLOAT':
raise m8rex.TypeHandlingNotImplemented(f1_type)
dims_str = ivlad.getout('sffiledims','parform=n',f1)
ndims = int(dims_str.split(':')[0])
cmd = 'sfspike mag=0 '
fields = 'n o d unit label'.split()
for i in range(ndims):
for z in fields:
cmd += ivlad.getout('sfget',['parform=y',z+str(i+1)],f1) + ' '
cmd += ' >' + f2
ivlad.exe(cmd)
return ivlad.unix_success
###############################################################################
if __name__ == '__main__':
ivlad.run(main, nminarg=2, nmaxarg=2)
f = 0
for i in range(nslices_whole):
i_str = ivlad.add_zeros(i, nslices_whole)
i_slc = os.path.join(outdir, i_str + '_stdout' + ivlad.ext)
cmd = '<%s sfwindow f%s=%d ' % (inp, lastdim, f)
cmd += 'n%s=%d %s > %s' % (lastdim, nthick, dpath, i_slc)
ivlad.exe(cmd, verb)
f += nthick
ist = n - nslices_whole * nthick # Incomplete Slice Thickness
if ist > 0:
i_str = ivlad.add_zeros(i + 1, nslices_whole)
i_slc = os.path.join(outdir, i_str + '_stdout' + ivlad.ext)
cmd = '<%s sfwindow f%s=%d ' % (inp, lastdim, f)
cmd += 'n%s=%d > %s' % (lastdim, ist, i_slc)
ivlad.exe(cmd, verb)
return ivlad.unix_success
##############################################
if __name__ == '__main__':
ivlad.run(main, ['inp'])
if n1 == 1:
ndim_out = 1
n = [n2]
o = [o[0]]
d = [d[0]]
unit = [unit[0]]
lbl = [lbl[0]]
else:
ndim_out = 2
n = [n2, n1]
out = ooio.RSFfile(ooio.stdout,par,ndim=ndim_out,intent='out',dtype=numtype)
out.set_hdr_info(n, o, d, unit, lbl)
if debug:
out.print_self('out')
out.hdr.print_self('out.hdr')
out.dat.print_self('out.dat')
ivlad.msg(ivlad.hr)
for line in lines:
for val in line:
out.write(val)
return ivlad.unix_success
##############################################
if __name__ == '__main__':
ivlad.run(main)
###############################################################################
def main(par):
prog = par.string('prog') # Non-madagascar utility
inp = par.string('inp') # Input file
tpar_str = par.string('tpar') # Translated params, i.e.: "ni1=n1 ni2=n2"
ipar_str = par.string(
'ipar') # Independent params, i.e. "perc=100 cmap=rgb"
verb = par.bool('verb', False)
tpar_out = ''
if tpar_str != None:
for tpar in tpar_str.split():
thispar = tpar.split('=')
tpar_out += thispar[0] + '=' + \
ivlad.getout('sfget', ['parform=n', thispar[1]], inp, verb) +' '
data = ivlad.getout('sfin', ['info=n', inp])
ivlad.exe(prog + ' <' + data + ' ' + tpar_out + ' ' + ipar_str, verb)
return ivlad.unix_success
##############################################
if __name__ == '__main__':
ivlad.run(main, ['prog', 'inp'])
valid_files_list += \
ivlad.list_valid_rsf_files(root, files, chk4nan)
else:
files = filter(lambda x:os.path.isfile(x),os.listdir(mydir))
valid_files_list += \
ivlad.list_valid_rsf_files(mydir, files, chk4nan=False)
for f in valid_files_list:
ivlad.msg(f + ': ' + ivlad.getout('sfin',['info=n',f]), verb)
sf.rm(f, verb)
# Clean up headers with no binaries
if recursive:
hdr_str = ivlad.getout('find',[mydir, '-type', 'f', '-name', '"*.rsf"'])
hdr_list = hdr_str.split('\n')
else:
hdr_list = filter(lambda x:os.path.isfile(x),
glob.glob(os.path.join(mydir,'*.rsf')))
for f in hdr_list:
ivlad.msg(f)
os.remove(f)
return ivlad.unix_success
###############################################################################
if __name__ == '__main__':
ivlad.run(main, ['dir'])
f1 = sys.argv[1] + ' '
f2 = sys.argv[2]
f1_type = ivlad.getout('sfgettype', stdin=f1)
if f1_type != 'SF_FLOAT':
raise m8rex.TypeHandlingNotImplemented(f1_type)
dims_str = ivlad.getout('sffiledims', 'parform=n', f1)
ndims = int(dims_str.split(':')[0])
cmd = 'sfspike mag=0 '
fields = 'n o d unit label'.split()
for i in range(ndims):
for z in fields:
cmd += ivlad.getout('sfget', ['parform=y', z + str(i + 1)],
f1) + ' '
cmd += ' >' + f2
ivlad.exe(cmd)
return ivlad.unix_success
###############################################################################
if __name__ == '__main__':
ivlad.run(main, nminarg=2, nmaxarg=2)
local_output_directory,
print_to_stdout=print_to_stdout,
logging_level=logging_level)
weighted_trace = math_op.weightSignalByDomainExponentiated(
domain_time_sample, data_by_trace_time,
median_balance_output.domain_exponent_power)
processed_data_by_trace_time = weighted_trace
# output data as rsf
#output = rsf.api.Output(output_rsf_file_name)
output = out
output.put("n1", num_time_sample)
output.put("o1", origin_time_sample)
output.put("d1", delta_time_sample)
output.put("n2", num_trace)
output.put("o2", origin_trace)
output.put("d2", delta_trace)
output.put("label1", rsf_input.string("label1"))
output.put("label2", rsf_input.string("label2"))
output.put("unit1", rsf_input.string("unit1"))
output.put("unit2", rsf_input.string("unit2"))
output.write(processed_data_by_trace_time)
return ivlad.unix_success
if __name__ == '__main__':
ivlad.run(balance_amplitude_via_median_balancing, cpar=['inp', 'out'])
# balance_amplitude_via_median_balancing(output_rsf_file_name='family_gained.rsf',
# treat_traces_individually=0)
# output data as rsf
#output = rsf.api.Output(output_rsf_file_name)
output = out
output.put("n1", num_time_sample)
output.put("o1", origin_time_sample)
output.put("d1", delta_time_sample)
output.put("n2", num_trace)
output.put("o2", origin_trace)
output.put("d2", delta_trace)
output.put("label1", rsf_input.string("label1"))
output.put("label2", rsf_input.string("label2"))
output.put("unit1", rsf_input.string("unit1"))
output.put("unit2", rsf_input.string("unit2"))
output.write(processed_data_by_trace_time)
return ivlad.unix_success
if __name__ == '__main__':
ivlad.run(balance_amplitude_via_median_balancing, cpar=['inp','out'])
# balance_amplitude_via_median_balancing(output_rsf_file_name='family_gained.rsf',
# treat_traces_individually=0)