def getListOfAvailableFLVs(self):
"""Return list of .flv files that can be streamed."""
scope = Red5.getConnectionLocal().getScope()
serverRoot = System.getProperty('red5.root')
filesMap = HashMap()
try:
print 'Getting the FLV files'
flvs = scope.getResources("streams/*.flv")
for file in flvs:
fso = File(serverRoot + '/webapps/oflaDemo' + file.path)
flvName = fso.getName()
flvBytes = 0
if hasattr(fso, 'length'):
flvBytes = fso.length()
else:
print 'Length not found'
lastMod = '0'
if hasattr(fso, 'lastModified'):
lastMod = self.formatDate(Date(fso.lastModified()))
else:
log.debug('Last modified not found')
print 'FLV Name:', flvName
print 'Last modified date:', lastMod
print 'Size:', flvBytes
print '-------'
fileInfo = HashMap(3);
fileInfo["name"] = flvName
fileInfo["lastModified"] = lastMod
fileInfo["size"] = flvBytes
filesMap[flvName] = fileInfo
except Exception, e:
print 'Error in getListOfAvailableFLVs:', e
def getListOfAvailableFLVs(self):
"""Return list of .flv files that can be streamed."""
scope = Red5.getConnectionLocal().getScope()
serverRoot = System.getProperty('red5.root')
filesMap = HashMap()
try:
print 'Getting the FLV files'
flvs = scope.getResources("streams/*.flv")
for file in flvs:
fso = File(serverRoot + '/webapps/oflaDemo' + file.path)
flvName = fso.getName()
flvBytes = 0
if hasattr(fso, 'length'):
flvBytes = fso.length()
else:
print 'Length not found'
lastMod = '0'
if hasattr(fso, 'lastModified'):
lastMod = self.formatDate(Date(fso.lastModified()))
else:
log.debug('Last modified not found')
print 'FLV Name:', flvName
print 'Last modified date:', lastMod
print 'Size:', flvBytes
print '-------'
fileInfo = HashMap(3)
fileInfo["name"] = flvName
fileInfo["lastModified"] = lastMod
fileInfo["size"] = flvBytes
filesMap[flvName] = fileInfo
except Exception, e:
print 'Error in getListOfAvailableFLVs:', e
def loadRasterLayer (rasterfile, mode = "r" ):
## Load a Raster file in a Layer
sourceFileName[0]=rasterfile
if not isinstance (rasterfile,File):
rasterfile = File(rasterfile)
name, ext = splitext(rasterfile.getName())
view = currentView()
# Get the manager to use
dalManager = DALLocator.getDataManager()
mapContextManager = MapContextLocator.getMapContextManager()
if ext.lower() == ".ecw" or ext.lower() == ".jp2" :
# FIXME
pass
elif ext.lower() == ".mrsid":
# FIXME
pass
else:
# Create the parameters to open the raster store based in GDAL
params = dalManager.createStoreParameters("Gdal Store")
params.setFile(rasterfile)
# Create the raster store
dataStore = dalManager.createStore(params)
# Create a raster layer based in this raster store
layer = mapContextManager.createLayer(name, dataStore);
view.addLayer(layer)
return layer
def batch_export():
from Experiment import config
dss = __DATASOURCE__.getSelectedDatasets()
if dss is None or len(dss) == 0:
print 'Please select one or more files to export.'
return
path = selectSaveFolder()
if path == None:
return
fi = File(path)
if not fi.exists():
if not fi.mkdir():
print 'Error: failed to make directory: ' + path
return
eid = int(experiment_id.value)
exp_folder = path + '/exp' + str(eid)
fi = File(exp_folder)
if not fi.exists():
if not fi.mkdir():
print 'Error: failed to make directory: ' + exp_folder
return
ILL_folder = exp_folder + '/ILLfiles'
exp_folder += '/Datafiles'
fi = File(exp_folder)
if not fi.exists():
if not fi.mkdir():
print 'Error: failed to make directory: ' + exp_folder
return
fi = File(ILL_folder)
if not fi.exists():
if not fi.mkdir():
print 'Error: failed to make directory: ' + ILL_folder
return
count = 0
for dinfo in dss:
loc = dinfo.getLocation()
f = File(loc)
fsn = f.getName()
# count = int(fsn[3:10])
# new_fname = 'TAIPAN_exp' + ('%(value)04d' % {'value':eid}) + '_scan' + ('%(value)04d' % {'value':count}) + '.dat'
df.datasets.clear()
try:
export.graffiti_export(df, loc, exp_folder, eid, get_prof_value)
except:
traceback.print_exc()
traceback.print_exc(file = __buffer_logger__)
df.datasets.clear()
try:
export.ILL_export(df, loc, ILL_folder, eid, get_prof_value)
except:
traceback.print_exc()
traceback.print_exc(file = __buffer_logger__)
# export.graffiti_export(df, loc, exp_folder, eid, get_prof_value)
# df.datasets.clear()
# export.ILL_export(df, loc, ILL_folder, eid, get_prof_value)
print 'done'
def run(self, ctx):
prj = ctx.getMainProject()
assert prj, 'Need a project'
artifactFile = File(self.path)
a = Artifact(artifactFile.getName(), FileInput(artifactFile))
print(a)
la = prj.processArtifact(a)
print(la)
def updated(controller, newValue):
global Plot1
global data
global axis
global fileId
print 'updated'
newCount = int(newValue.getStringData())
scanpoint = scanpoint_node.getValue().getIntData()
variable_value = scan_variable_value_node.getValue().getFloatData()
if scanpoint == 1:
data = [newCount]
axis = [variable_value]
else:
data.append(newCount)
axis.append(variable_value)
variable_name = scan_variable_node.getValue().getStringData()
axis_name.value = variable_name
try:
checkFile = File(filenameNode.getValue().getStringData())
dataPath = System.getProperty('sics.data.path')
checkFile = File(dataPath + "/" + checkFile.getName())
filePath = checkFile.getAbsolutePath()
if not checkFile.exists():
print "The target file :" + checkFile.getAbsolutePath() + " can not be found";
dataSourceViewer.addDataset(filePath, False)
fileId = checkFile.getName()
if fileId.__contains__('TPN') and fileId.__contains__('.nx.hdf'):
fileId = str(int(fileId[3 : 10]))
except:
print 'failed to load the file'
fileId = variable_name
print fileId
ds = Dataset(data, axes = [axis], title = fileId)
print ds
Plot1.set_dataset(ds)
Plot1.x_label = variable_name
Plot1.y_label = 'counts'
Plot1.title = 'counts vs ' + variable_name
def split(path):
if sys.platform.startswith('java'):
from java.io import File
f=File(path)
d=f.getParent()
if not d:
if f.isAbsolute():
d = path
else:
d = ""
return (d, f.getName())
else:
import os
return os.path.split(path)
def batch_export():
from Experiment import config
dss = __get_selected_files__()
if dss is None or len(dss) == 0:
print 'Please select one or more files to export.'
return
path = selectSaveFolder()
if path == None:
return
fi = File(path)
if not fi.exists():
if not fi.mkdir():
print 'Error: failed to make directory: ' + path
return
eid = int(experiment_id.value)
exp_folder = path + '/exp' + str(eid)
fi = File(exp_folder)
if not fi.exists():
if not fi.mkdir():
print 'Error: failed to make directory: ' + exp_folder
return
ILL_folder = exp_folder + '/ILLfiles'
exp_folder += '/Datafiles'
fi = File(exp_folder)
if not fi.exists():
if not fi.mkdir():
print 'Error: failed to make directory: ' + exp_folder
return
fi = File(ILL_folder)
if not fi.exists():
if not fi.mkdir():
print 'Error: failed to make directory: ' + ILL_folder
return
count = 0
flist = []
for loc in dss:
f = File(loc)
fsn = f.getName()
# count = int(fsn[3:10])
# new_fname = 'TAIPAN_exp' + ('%(value)04d' % {'value':eid}) + '_scan' + ('%(value)04d' % {'value':count}) + '.dat'
df.datasets.clear()
fn = export.graffiti_export(df, loc, exp_folder, eid, get_pref_value)
flist.append(fn)
df.datasets.clear()
fn = export.ILL_export(df, loc, ILL_folder, eid, get_pref_value)
flist.append(fn)
if len(flist) > 0:
zip_files(flist, 'TAIPAN_rd_' + str(int(time.time()))[2:] + '.zip')
print 'done'
def batch_export():
from Experiment import config
dss = __get_selected_files__()
if dss is None or len(dss) == 0:
print 'Please select one or more files to export.'
return
path = selectSaveFolder()
if path == None:
return
fi = File(path)
if not fi.exists():
if not fi.mkdir():
print 'Error: failed to make directory: ' + path
return
eid = int(experiment_id.value)
exp_folder = path + '/exp' + str(eid)
fi = File(exp_folder)
if not fi.exists():
if not fi.mkdir():
print 'Error: failed to make directory: ' + exp_folder
return
ILL_folder = exp_folder + '/ILLfiles'
exp_folder += '/Datafiles'
fi = File(exp_folder)
if not fi.exists():
if not fi.mkdir():
print 'Error: failed to make directory: ' + exp_folder
return
fi = File(ILL_folder)
if not fi.exists():
if not fi.mkdir():
print 'Error: failed to make directory: ' + ILL_folder
return
count = 0
flist = []
for loc in dss:
f = File(loc)
fsn = f.getName()
# count = int(fsn[3:10])
# new_fname = 'TAIPAN_exp' + ('%(value)04d' % {'value':eid}) + '_scan' + ('%(value)04d' % {'value':count}) + '.dat'
df.datasets.clear()
fn = export.graffiti_export(df, loc, exp_folder, eid, get_pref_value)
flist.append(fn)
df.datasets.clear()
fn = export.ILL_export(df, loc, ILL_folder, eid, get_pref_value)
flist.append(fn)
if len(flist) > 0:
zip_files(flist, 'TAIPAN_rd_' + str(int(time.time()))[2:] + '.zip')
print 'done'
def main ():
print "main"
prefs();
projection();
importer = OsmImporter()
fileObj= File('/home/mdupont/experiments/josm/topeka/noto.osm')
# fileObj= File('/home/mdupont/experiments/josm/topeka/topeka.osm')
inobj = FileInputStream(fileObj);
data = importer.loadLayer(inobj, fileObj, fileObj.getName(), NullProgressMonitor.INSTANCE)
s = data.toString();
# print s
primitives = data.getLayer().data.allPrimitives();
# print primitives
objs= primitives.toArray()
#DisplayTable(obj)
streetlist(objs)
def actionPerformed(self,actionEvent):
fc = JFileChooser(constants_lib.const_path_dict["LINAC_WIZARD_FILES_DIR_PATH"])
fc.setDialogTitle("Save data into the file ...")
fc.setApproveButtonText("Save")
fl_filter = FileNameExtensionFilter("SCL Wizard",["sclw",])
fc.setFileFilter(fl_filter)
returnVal = fc.showOpenDialog(self.linac_wizard_document.linac_wizard_window.frame)
if(returnVal == JFileChooser.APPROVE_OPTION):
fl_out = fc.getSelectedFile()
fl_path = fl_out.getPath()
if(fl_path.rfind(".sclw") != (len(fl_path) - 5)):
fl_out = File(fl_out.getPath()+".sclw")
io_controller = self.linac_wizard_document.getIO_Controller()
io_controller.writeData(fl_out.toURI().toURL())
io_controller.old_fl_out_name = fl_out.getName()
self.linac_wizard_document.linac_wizard_window.setTitle(io_controller.old_fl_out_name)
def actionPerformed(self,actionEvent):
fc = JFileChooser(constants_lib.const_path_dict["LINAC_WIZARD_FILES_DIR_PATH"])
fc.setDialogTitle("Save data into the file ...")
fc.setApproveButtonText("Save")
fl_filter = FileNameExtensionFilter("SCL Wizard",["sclw",])
fc.setFileFilter(fl_filter)
returnVal = fc.showOpenDialog(self.linac_wizard_document.linac_wizard_window.frame)
if(returnVal == JFileChooser.APPROVE_OPTION):
fl_out = fc.getSelectedFile()
fl_path = fl_out.getPath()
if(fl_path.rfind(".sclw") != (len(fl_path) - 5)):
fl_out = File(fl_out.getPath()+".sclw")
io_controller = self.linac_wizard_document.getIO_Controller()
io_controller.writeData(fl_out.toURI().toURL())
io_controller.old_fl_out_name = fl_out.getName()
self.linac_wizard_document.linac_wizard_window.setTitle(io_controller.old_fl_out_name)
def valueChanged(self, controller, newValue):
global __file_to_add__
newCount = int(newValue.getStringData());
if newCount != self.saveCount:
self.saveCount = newCount;
try:
checkFile = File(__file_name_node__.getValue().getStringData());
checkFile = File(__data_folder__ + "/" + checkFile.getName());
__file_to_add__ = checkFile.getAbsolutePath();
if not checkFile.exists():
print "The target file :" + __file_to_add__ + " can not be found";
return
runnable = __Display_Runnable__()
runnable.run = add_dataset
Display.getDefault().asyncExec(runnable)
except:
print 'failed to add dataset ' + __file_to_add__
def valueChanged(self, controller, newValue):
global __file_to_add__
newCount = int(newValue.getStringData())
if newCount != self.saveCount:
self.saveCount = newCount
try:
checkFile = File(__file_name_node__.getValue().getStringData())
checkFile = File(__data_folder__ + "/" + checkFile.getName())
__file_to_add__ = checkFile.getAbsolutePath()
if not checkFile.exists():
print "The target file :" + __file_to_add__ + " can not be found"
return
runnable = __Display_Runnable__()
runnable.run = add_dataset
Display.getDefault().asyncExec(runnable)
except:
print 'failed to add dataset ' + __file_to_add__
def run(self, ctx):
engctx = ctx.getEnginesContext()
if not engctx:
print('Back-end engines not initialized')
return
projects = engctx.getProjects()
if not projects:
print('There is no opened project')
return
prj = projects[0]
artifactFile = File(self.path)
a = Artifact(artifactFile.getName(), FileInput(artifactFile))
print(a)
la = prj.processArtifact(a)
print(la)
def run(self, ctx):
engctx = ctx.getEnginesContext()
if not engctx:
print('Back-end engines not initialized')
return
projects = engctx.getProjects()
if not projects:
print('There is no opened project')
return
prj = projects[0]
artifactFile = File(self.path)
a = Artifact(artifactFile.getName(), FileInput(artifactFile))
print(a)
la = prj.processArtifact(a)
print(la)
def lstat(path):
"""lstat(path) -> stat result
Like stat(path), but do not follow symbolic links.
"""
abs_path = sys.getPath(path)
try:
return stat_result.from_jnastat(_posix.lstat(abs_path))
except NotImplementedError:
pass
except:
raise
f = File(sys.getPath(path))
# XXX: jna-posix implements similar link detection in
# JavaFileStat.calculateSymlink, fallback to that instead when not
# native
abs_parent = f.getAbsoluteFile().getParentFile()
if not abs_parent:
# root isn't a link
return stat(path)
can_parent = abs_parent.getCanonicalFile()
if can_parent.getAbsolutePath() == abs_parent.getAbsolutePath():
# The parent directory's absolute path is canonical..
if f.getAbsolutePath() != f.getCanonicalPath():
# but the file's absolute and canonical paths differ (a
# link)
return stat_result((_stat.S_IFLNK, 0, 0, 0, 0, 0, 0, 0, 0, 0))
# The parent directory's path is not canonical (one of the parent
# directories is a symlink). Build a new path with the parent's
# canonical path and compare the files
f = File(_path.join(can_parent.getAbsolutePath(), f.getName()))
if f.getAbsolutePath() != f.getCanonicalPath():
return stat_result((_stat.S_IFLNK, 0, 0, 0, 0, 0, 0, 0, 0, 0))
# Not a link, only now can we determine if it exists (because
# File.exists() returns False for dead links)
if not f.exists():
raise OSError(errno.ENOENT, strerror(errno.ENOENT), path)
return stat(path)
def lstat(path):
"""lstat(path) -> stat result
Like stat(path), but do not follow symbolic links.
"""
abs_path = sys.getPath(path)
try:
return stat_result.from_jnastat(_posix.lstat(abs_path))
except NotImplementedError:
pass
except:
raise
f = File(sys.getPath(path))
# XXX: jna-posix implements similar link detection in
# JavaFileStat.calculateSymlink, fallback to that instead when not
# native
abs_parent = f.getAbsoluteFile().getParentFile()
if not abs_parent:
# root isn't a link
return stat(path)
can_parent = abs_parent.getCanonicalFile()
if can_parent.getAbsolutePath() == abs_parent.getAbsolutePath():
# The parent directory's absolute path is canonical..
if f.getAbsolutePath() != f.getCanonicalPath():
# but the file's absolute and canonical paths differ (a
# link)
return stat_result((_stat.S_IFLNK, 0, 0, 0, 0, 0, 0, 0, 0, 0))
# The parent directory's path is not canonical (one of the parent
# directories is a symlink). Build a new path with the parent's
# canonical path and compare the files
f = File(_path.join(can_parent.getAbsolutePath(), f.getName()))
if f.getAbsolutePath() != f.getCanonicalPath():
return stat_result((_stat.S_IFLNK, 0, 0, 0, 0, 0, 0, 0, 0, 0))
# Not a link, only now can we determine if it exists (because
# File.exists() returns False for dead links)
if not f.exists():
raise OSError(errno.ENOENT, strerror(errno.ENOENT), path)
return stat(path)
def openNewItem(self,itempath):
itempath=self.normalizeItemFileName(itempath)
# Construct a sane default instance of an item
defaultcontent = self.defaultItemContent
# Add the item to the current model
# ... use xom to create a new document model object with default content
# then open the new item from the model
fileitem = File(itempath)
unparsedcontent=defaultcontent
try:
self.view.status("Examining file "+fileitem.name )
doc = Builder().build( unparsedcontent, "" )
summary = XQueryUtil.xquery(doc, "/story/@title").get(0).getValue()
content = doc.toXML()
self.model.addItemToProject( fileitem, summary, content )
except XMLException, e:
ndebug(unparsedcontent)
self.view.status("Can't find an XML parser: "+e.toString() )
ndebug("Can't find an XML parser: "+e.toString() )
self.model.addItemToProject( fileitem, fileitem.getName() + " (Warning: not well-formed: ``"+e.toString()+"'')" , unparsedcontent )
def saved(controller, newValue):
global __UI__
if pause.value:
return
newCount = int(newValue.getStringData())
axis_name.value = scan_variable_node.getValue().getStringData()
# __UI__.getScriptExecutor().runScript(cmd)
log('scanpoint=' + str(scanpoint_node.getValue().getIntData() + 1), __writer__)
if newCount > 0:
try:
checkFile = File(filenameNode.getValue().getStringData())
dataPath = System.getProperty('sics.data.path')
checkFile = File(dataPath + "/" + checkFile.getName())
filePath = checkFile.getAbsolutePath()
if not checkFile.exists():
log("The target file :" + checkFile.getAbsolutePath() + " can not be found")
dataSourceViewer.addDataset(filePath, True)
except:
log('failed to load the file')
def loadStore (self,rasterfile, mode = "r" ):
if not isinstance(rasterfile,File):
rasterfile = File(rasterfile)
name, ext = splitext(rasterfile.getName())
dalManager = DALLocator.getDataManager()
if ext.lower() == ".ecw" or ext.lower() == ".jp2" :
# FIXME
pass
elif ext.lower() == ".mrsid":
# FIXME
pass
else:
# Create the parameters to open the raster store based in GDAL
params = dalManager.createStoreParameters("Gdal Store")
params.setFile(rasterfile)
# Create the raster store
dataStore = dalManager.createStore(params)
return dataStore
def openNewItem(self, itempath):
itempath = self.normalizeItemFileName(itempath)
# Construct a sane default instance of an item
defaultcontent = self.defaultItemContent
# Add the item to the current model
# ... use xom to create a new document model object with default content
# then open the new item from the model
fileitem = File(itempath)
unparsedcontent = defaultcontent
try:
self.view.status("Examining file " + fileitem.name)
doc = Builder().build(unparsedcontent, "")
summary = XQueryUtil.xquery(doc, "/story/@title").get(0).getValue()
content = doc.toXML()
self.model.addItemToProject(fileitem, summary, content)
except XMLException, e:
ndebug(unparsedcontent)
self.view.status("Can't find an XML parser: " + e.toString())
ndebug("Can't find an XML parser: " + e.toString())
self.model.addItemToProject(
fileitem,
fileitem.getName() + " (Warning: not well-formed: ``" +
e.toString() + "'')", unparsedcontent)
class CommandHeap(Commands):
def __init__(self):
pass
def buildCommands(self,s):
self.path=File(s)
files=[]
if self.path.isDirectory(): self.addCommands(self.path, files)
self.heap=Heap(files)
def addCommands(self, path, files):
commands = path.listFiles()
for x in commands:
if x.isDirectory(): self.addCommands(x,files)
else: files.append(x)
def exists(self,command):
return self.heap.exists(command)
def update(self):
self.buildCommands(self.path.getName())
def getAllCommands(self):
return self.heap.getAll()
def ILL_export(df, input_path, exp_folder, eid, get_prof_value):
from Experiment import config
f = File(input_path)
fsn = f.getName()
fid = int(fsn[3:10])
# index = fsn.rindex('.')
# if index > 0 and index <= len(fsn) - 2 :
# fsn = fsn[:index]
new_fname = fsn[:fsn.index('.')] + '.ILL'
nfn = exp_folder + '/' + new_fname
ds = df[str(input_path)]
if len(ds.axes) > 0:
axes = ds.axes
else:
axes = None
ds.y_title = 'detector'
nf = open(nfn, 'w')
try:
text = []
text.append('R' * 80 + '\n')
text.append(' ' + str(fid) + ' 1 0' + '\n')
text.append('TAIPAN TAS data in the new ASCII format follow after the line VV...V' + '\n')
text.append('A' * 80 + '\n')
text.append(' 80 0' + '\n')
text.append('TAIPAN\t' + str(ds['user_name']) + '\t' + str(ds['start_time']) + '\n')
text.append('V' * 80 + '\n')
text.append('INSTR: TAIPAN' + '\n')
text.append('EXPNO: ' + str(eid) + '\n')
text.append('USER_: ' + str(ds['user_name']) + '\n')
text.append('LOCAL: ' + get_prof_value(LOCAL_CONTACT_PNAME) + '\n')
text.append('FILE_: ' + fsn + '\n')
text.append('DATE_: ' + str(ds['start_time']) + '\n')
text.append('TITLE: ' + str(ds['experiment_title']) + '\n')
text.append('COMND: ' + '' + '\n')
if ds.size > 1:
text.append('POSQE: QH=' + format(ds['qh'][0], 4, 8) + ', QK=' + format(ds['qk'][0], 4, 8) + ', QL=' + format(ds['ql'][0], 4, 8) + ', EN=' + format(ds['en'][0], 4, 9) + ', UN=meV' + '\n')
else:
try:
text.append('POSQE: QH=' + format(ds['qh'], 4, 8) + ', QK=' + format(ds['qk'], 4, 8) + ', QL=' + format(ds['ql'], 4, 8) + ', EN=' + format(ds['en'], 4, 9) + ', UN=meV' + '\n')
except:
pass
step = 0
axis = None
if axes != None:
axis = axes[-1]
else :
axis = ds['suid']
if axis.size > 1:
step = (axis[-1] - axis[0]) / (axis.size - 1)
text.append('STEPS: ' + axis.title + '=' + format(step, 2, 6) + '\n')
sense = get_prof_value(SENSE_PNAME)
sm = ''
ss = ''
sa = ''
try :
sm = sense[0] + '1'
ss = sense[1] + '1'
sa = sense[2] + '1'
except:
pass
text.append('PARAM: DM=3.355, \tDA=3.355, \tSM=' + sm + ', \tSS=' + ss + ', \tSA=' + sa + '\n')
text.append('PARAM: FX=2, \tKFIX=14.87' + '\n')
alf1 = ''
alf2 = ''
alf3 = ''
alf4 = ''
hcoll = get_prof_value(HORIZONTALCOLLIMATION_PNAME)
try:
sep = ' '
if (hcoll.__contains__(',')):
sep = ','
llist = hcoll.split(sep)
for i in xrange(len(llist)):
if llist[i] == ' ':
del llist[i]
alf1 = llist[0].strip()
alf2 = llist[1].strip()
alf3 = llist[2].strip()
alf4 = llist[3].strip()
except:
pass
bet1 = ''
bet2 = ''
bet3 = ''
bet4 = ''
vcoll = get_prof_value(VERTICALCOLLIMATION_PNAME)
try:
sep = ' '
if (vcoll.__contains__(',')):
sep = ','
llist = vcoll.split(sep)
for i in xrange(len(llist)):
if llist[i] == ' ':
del llist[i]
bet1 = llist[0].strip()
bet2 = llist[1].strip()
bet3 = llist[2].strip()
bet4 = llist[3].strip()
except:
pass
text.append('PARAM: ALF1=' + alf1 + '\t, ALF2=' + alf2 + '\t, ALF3=' + alf3 + '\t, ALF4=' + alf4 + '\t' + '\n')
text.append('PARAM: BET1=' + bet1 + '\t, BET2=' + bet2 + '\t, BET3=' + bet3 + '\t, BET4=' + bet4 + '\t' + '\n')
text.append('PARAM: ETAM=30, \tETAA=30' + '\n')
las = ''
lbs = ''
lcs = ''
laa = ''
lbb = ''
lcc = ''
try:
ub_cell = sicsext.runCommand('tasub cell').strip()
llist = ub_cell.split(' ')
las = llist[0].strip()
lbs = llist[1].strip()
lcs = llist[2].strip()
laa = llist[3].strip()
lbb = llist[4].strip()
lcc = llist[5].strip()
except:
lattice = get_prof_value(LATTICECONSTANTS_PNAME).strip()
try:
sep = ' '
if (lattice.__contains__(',')):
sep = ','
llist = lattice.split(sep)
for i in xrange(len(llist)):
if llist[i] == ' ':
del llist[i]
las = llist[0].strip()
lbs = llist[1].strip()
lcs = llist[2].strip()
laa = llist[3].strip()
lbb = llist[4].strip()
lcc = llist[5].strip()
except:
pass
etas = ''
smosaic = get_prof_value(SAMPLEMOSAIC_PNAME)
if smosaic != None :
etas = smosaic
text.append('PARAM: AS=' + las + '\t, BS=' + lbs + '\t, CS=' + lcs + '\t' + '\n')
text.append('PARAM: AA=' + laa + '\t, BB=' + lbb + '\t, CC=' + lcc + '\t, ETAS=' + etas + '\t' + '\n')
sax = ''
say = ''
saz = ''
sbx = ''
sby = ''
sbz = ''
try:
ub_matrix = sicsext.runCommand('tasub listub')
if ub_matrix.__contains__('UB generated') :
val = ub_matrix[:ub_matrix.index('UB generated')].strip()
llist = val.split('\n')
llist0 = llist[0].strip().split(' ')
sax = llist0[0].strip()
say = llist0[1].strip()
saz = llist0[2].strip()
llist1 = llist[1].strip().split(' ')
sbx = llist1[0].strip()
sby = llist1[1].strip()
sbz = llist1[2].strip()
except:
splane = get_prof_value(SCATTERINGPLANE_PNAME).strip()
try:
sep = ' '
if (splane.__contains__(',')):
sep = ','
llist = splane.split(sep)
for i in xrange(len(llist)):
if llist[i] == ' ':
del llist[i]
sax = llist[0].strip()
say = llist[1].strip()
saz = llist[2].strip()
sbx = llist[3].strip()
sby = llist[4].strip()
sbz = llist[5].strip()
except:
pass
text.append('PARAM: AX=' + sax + '\t, AY=' + say + '\t, AZ=' + saz + '\t' + '\n')
text.append('PARAM: BX=' + sbx + '\t, BY=' + sby + '\t, BZ=' + sbz + '\t' + '\n')
if ds.size > 1:
text.append('VARIA: M1=' + format(ds['m1'][0], 2, 7) + ', M2=' + format(ds['m2'][0], 2, 7) + ', S1=' + format(ds['s1'][0], 2, 7) + ', S2=' + format(ds['s2'][0], 2, 7) + '\n')
text.append('VARIA: A1=' + format(ds['a1'][0], 2, 7) + ', A2=' + format(ds['a2'][0], 2, 7) + ', RM=\t, RA=\t' + '\n')
else:
try:
text.append('VARIA: M1=' + format(ds['m1'], 2, 7) + ', M2=' + format(ds['m2'], 2, 7) + ', S1=' + format(ds['s1'], 2, 7) + ', S2=' + format(ds['s2'], 2, 7) + '\n')
text.append('VARIA: A1=' + format(ds['a1'], 2, 7) + ', A2=' + format(ds['a2'], 2, 7) + ', RM=\t, RA=\t' + '\n')
except:
pass
text.append('VARIA: TD=\t' + '\n')
try:
m10 = float(sicsext.runCommand('m1 softzero'))
m20 = float(sicsext.runCommand('m2 softzero'))
s10 = float(sicsext.runCommand('s1 softzero'))
s20 = float(sicsext.runCommand('s2 softzero'))
a10 = float(sicsext.runCommand('a1 softzero'))
a20 = float(sicsext.runCommand('a2 softzero'))
text.append('ZEROS: A1=' + format(m10, 2, 7) + ', A2=' + format(m20, 2, 7)
+ ', A3=' + format(s10, 2, 7) + ', A4=' + format(s20, 2, 7) + '\n')
text.append('ZEROS: A5=' + format(a10, 2, 7) + ', A6=' + format(a20, 2, 7) + ', RM=\t, RA=\t' + '\n')
except:
text.append('ZEROS: A1=\t0.0, A2=\t0.0, A3=\t0.0, A4=0.0\n')
text.append('ZEROS: A5=\t0.0, A6=\t0.0, RM=\t, RA=\t' + '\n')
text.append('ZEROS: TD=\t' + '\n')
mode = ds['bm_mode']
if str(mode) == 'Timer':
mode = 'TI'
else:
mode = 'MO'
preset = ds['bm_preset']
text.append('PARAM: ' + mode + '=' + format(preset, 2, 10) + '\n')
try:
text.append('PARAM: TT=' + format(ds['tc1_ctrl1'][0], 2, 7) + ', RT=\t, TT2=\t, RT2=\t, MAG=\t' + '\n')
except:
text.append('PARAM: TT=\t, RT=\t, TT2=\t, RT2=\t, MAG=\t' + '\n')
text.append('FORMT: (I4,1X,F9.4,2(1X,F8.0),1X,F9.2,1x,F,6(1X,F9.4))\n')
text.append('DATA_: ' + '\n')
titles = ' PNT' + ('%(item)10s' % {'item' : axis.title})
# for item in config.ILL_ITEMS:
# titles += ('%(item)10s' % {'item' : item[0]})
# text.append(titles + '\n')
# for i in xrange(axis.size):
# line = '%(value)4d' % {'value' : i + 1} + ' '
# line += format(axis[i], 4, 10)
# for item in config.ILL_ITEMS:
# par = ds[item[1]]
# if par:
# line += format(par[i], item[2], 10)
# else:
# line += format(0, item[2], 10)
# text.append(line + '\n')
# text.append('Finished at ' + str(ds['end_time']))
titles = ' PNT'
axes_titles = []
to_skip = []
if axes != None:
for axis in axes:
at = axis.title
axes_titles.append(at)
titles += ('%(item)12s' % {'item' : at})
if len(axes) > 0 and axes[0] != None:
axis0 = axes[0]
for i in xrange(axis0.size) :
if math.fabs(axis0[i]) > 1e8:
to_skip.append(i)
for tit in config.MULTI_ITEMS:
if not axes_titles.__contains__(tit[0]) :
titles += ('%(item)12s' % {'item' : tit[0]})
comps = []
items = ds.__iNXdata__.getDataItemList()
for item in items:
target = item.getAttribute('target')
if target :
if target.getStringValue().__contains__('sample'):
comps.append(item)
sn = item.getShortName()
if len(sn) > 2:
if sn.__contains__('SP') :
sn = sn[:2] + sn[2:].replace('SP', '_Setpoint')
elif sn[2:].__contains__('S') :
sn = sn[:2] + sn[2:].replace('S', '_Sensor')
titles += ('%(item)16s' % {'item' : sn})
text.append(titles + '\n')
for i in xrange(ds.size):
if to_skip.__contains__(i):
continue
line = ('%(item)5s' % {'item' : str(i + 1)})
if axes != None:
for axis in axes:
fmt = '.4f'
try:
at = str(axis.title)
for item in config.MULTI_ITEMS:
if item[1] == at:
fmt = item[2]
break
except:
pass
line += ('%(item)12s' % {'item' : (('%(value)' + fmt) % {'value' : axis[i]})})
for tit in config.MULTI_ITEMS:
if not axes_titles.__contains__(tit[0]) :
if tit[0].endswith('_err') :
try:
if ds.size == 1:
line += ('%(item)12s' % {'item' : (('%(value)' + tit[2]) % {'value' : math.sqrt(ds[tit[1]])})})
else:
line += ('%(item)12s' % {'item' : (('%(value)' + tit[2]) % {'value' : math.sqrt(ds[tit[1]][i])})})
except:
line += ('%(item)12s' % {'item' : '0.0000'})
else :
try:
if ds.size == 1:
line += ('%(item)12s' % {'item' : (('%(value)' + tit[2]) % {'value' : ds[tit[1]]})})
else:
line += ('%(item)12s' % {'item' : (('%(value)' + tit[2]) % {'value' : ds[tit[1]][i]})})
except:
line += ('%(item)12s' % {'item' : '0.0000'})
for comp in comps:
data = comp.getData()
line += ('%(item)16.4f' % {'item' : data.getFloat(data.getIndex().set(i))})
text.append(line + '\n')
nf.writelines(text)
nf.flush()
# except:
# print 'failed to process: ' + nfn
# traceback.print_exc(file=sys.stdout)
# finally:
# nf.close()
# ds.close()
# except:
# nf.close()
# ds.close()
# print 'failed to process: ' + nfn
# traceback.print_exc(file=sys.stdout)
# except:
# print 'failed to process: ' + nfn
# traceback.print_exc(file=sys.stdout)
finally:
nf.close()
ds.close()
print nfn + ' exported'
def graffiti_export(df, input_path, exp_folder, eid, get_prof_value):
from Experiment import config
from Experiment.lib.common import __get_axis_name__
f = File(input_path)
fsn = f.getName()
fid = int(fsn[3:10])
# index = fsn.rindex('.')
# if index > 0 and index <= len(fsn) - 2 :
# fsn = fsn[:index]
new_fname = 'TAIPAN_exp' + ('%(value)04d' % {'value':eid}) + '_scan' + ('%(value)04d' % {'value':fid}) + '.dat'
nfn = exp_folder + '/' + new_fname
ds = df[str(input_path)]
if len(ds.axes) > 0:
axes = ds.axes
else:
axes = None
ds.y_title = 'detector'
nf = open(nfn, 'w')
try:
text = '# raw_file = ' + fsn + '\n'
nf.write(text)
for item in config.SINGLE_ITEMS:
text = '# ' + item[0] + ' = '
if item[0] == 'proposal' :
text += get_prof_value(PROPOSAL_ID_PNAME)
elif item[0] == 'experiment_number':
text += str(eid)
elif item[0] == 'local_contact':
text += get_prof_value(LOCAL_CONTACT_PNAME)
elif item[0] == 'scan':
text += str(fid)
elif item[0] == 'experiment':
text += get_prof_value(EXPERIMENT_TITLE_PNAME)
elif item[0] == 'scan_title':
text += str(ds['experiment_title'])
elif item[0] == 'users':
text += get_prof_value(USER_NAME_PNAME)
elif item[0] == 'samplename':
text += get_prof_value(SAMPLENAME_PNAME)
elif item[0] == 'sampletype':
text += get_prof_value(SAMPLETYPE_PNAME)
elif item[0] == 'samplemosaic':
text += get_prof_value(SAMPLEMOSAIC_PNAME)
elif item[0] == 'latticeconstants':
try:
ub_cell = sicsext.runCommand('tasub cell')
text += ub_cell
except:
text += get_prof_value(LATTICECONSTANTS_PNAME)
elif item[0] == 'ubmatrix':
try:
ub_matrix = sicsext.runCommand('tasub listub')
if ub_matrix.__contains__('UB generated') :
val = ub_matrix[:ub_matrix.index('UB generated')]
val = val.replace('\n', '')
text += val
else:
text += ub_matrix
except:
text += get_prof_value(UBMATRIX_PNAME)
elif item[0] == 'mode':
text += '0'
elif item[0] == 'plane_normal':
text += get_prof_value(SCATTERINGPLANE_PNAME)
elif item[0] == 'monochromator':
text += get_prof_value(MONOCHROMATOR_PNAME)
elif item[0] == 'analyzer':
text += get_prof_value(ANALYZER_PNAME)
elif item[0] == 'sense':
text += get_prof_value(SENSE_PNAME)
elif item[0] == 'collimation':
text += get_prof_value(COLLIMATION_PNAME)
elif item[0] == 'preset_type':
text += 'normal '
elif item[0] == 'preset_channel':
value = str(ds[item[1]])
if value == 'Timer':
text += 'time'
elif value == 'Monitor':
text += 'monitor'
else:
text += ''
elif item[0] == 'def_x':
try:
text += __get_axis_name__(axes)
except:
traceback.print_exc()
text += ''
else:
if item[1] != None:
if item[1] != None:
try:
text += str(ds[item[1]])
except:
text += item[1]
else:
text += ''
text += '\n'
nf.write(text)
# if len(ds) > 1:
# text = '# Sum_of_Counts = ' + str(ds['bm2_counts'].sum()) + '\n'
# else:
# text = '# Sum_of_Counts = ' + str(ds['bm2_counts']) + '\n'
# nf.write(text)
text = '#' + ('%(item)6s' % {'item' : 'Pt.'})
axes_titles = []
to_skip = []
if axes != None:
for axis in axes:
at = axis.title
axes_titles.append(at)
text += ('%(item)12s' % {'item' : at})
if len(axes) > 0 and axes[0] != None:
axis0 = axes[0]
for i in xrange(axis0.size) :
if math.fabs(axis0[i]) > 1e8:
to_skip.append(i)
for tit in config.MULTI_ITEMS:
if not axes_titles.__contains__(tit[0]) :
text += ('%(item)12s' % {'item' : tit[0]})
pol_enabled = False
try:
pol_field = ds['pol_field']
if pol_field != None:
pol_enabled = True
except:
pass
if pol_enabled :
for tit in config.POLARISER_ITEMS:
text += ('%(item)12s' % {'item' : tit[0]})
comps = []
items = ds.__iNXdata__.getDataItemList()
for item in items:
target = item.getAttribute('target')
if target :
if target.getStringValue().__contains__('sample'):
comps.append(item)
sn = item.getShortName()
if len(sn) > 2:
if sn.__contains__('SP') :
sn = sn[:2] + sn[2:].replace('SP', '_Setpoint')
elif sn[2:].__contains__('S') :
sn = sn[:2] + sn[2:].replace('S', '_Sensor')
text += ('%(item)16s' % {'item' : sn})
nf.write(text + '\n')
for i in xrange(ds.size):
if to_skip.__contains__(i):
continue
text = ('%(item)7s' % {'item' : str(i + 1)})
if axes != None:
for axis in axes:
fmt = '.4f'
try:
at = str(axis.title)
for item in config.MULTI_ITEMS:
if item[1] == at:
fmt = item[2]
break
except:
pass
text += ('%(item)12s' % {'item' : (('%(value)' + fmt) % {'value' : axis[i]})})
for tit in config.MULTI_ITEMS:
if not axes_titles.__contains__(tit[0]) :
if str(tit[0]).endswith('_err') :
try:
if ds.size == 1:
print tit[0]
text += ('%(item)12s' % {'item' : (('%(value)' + tit[2]) % {'value' : math.sqrt(ds[tit[1]])})})
else:
text += ('%(item)12s' % {'item' : (('%(value)' + tit[2]) % {'value' : math.sqrt(ds[tit[1]][i])})})
except:
text += ('%(item)12s' % {'item' : '0.0000'})
else:
try:
if ds.size == 1:
text += ('%(item)12s' % {'item' : (('%(value)' + tit[2]) % {'value' : ds[tit[1]]})})
else:
text += ('%(item)12s' % {'item' : (('%(value)' + tit[2]) % {'value' : ds[tit[1]][i]})})
except:
text += ('%(item)12s' % {'item' : '0.0000'})
if pol_enabled :
for tit in config.POLARISER_ITEMS:
if not axes_titles.__contains__(tit[0]) :
try:
if ds.size == 1:
text += ('%(item)12s' % {'item' : (('%(value)' + tit[2]) % {'value' : ds[tit[1]]})})
else:
text += ('%(item)12s' % {'item' : (('%(value)' + tit[2]) % {'value' : ds[tit[1]][i]})})
except:
text += ('%(item)12s' % {'item' : '0.0000'})
for comp in comps:
data = comp.getData()
text += ('%(item)16.4f' % {'item' : data.getFloat(data.getIndex().set(i))})
nf.write(text + '\n')
# except:
# traceback.print_exc(file = sys.stdout)
# print 'failed to process: ' + input_path
finally:
nf.close()
ds.close()
print nfn + ' exported'
def batch_export():
from Experiment import config
dss = __DATASOURCE__.getSelectedDatasets()
path = selectSaveFolder()
if path == None:
return
fi = File(path)
if not fi.exists():
if not fi.mkdir():
print 'Error: failed to make directory: ' + path
return
if str(fi.getName()) != 'taipan':
path += '/taipan'
fi = File(path)
if not fi.exists():
if not fi.mkdir():
print 'Error: failed to make directory: ' + path
return
eid = experiment_id.value
exp_folder = path + '/exp' + str(eid)
fi = File(exp_folder)
if not fi.exists():
if not fi.mkdir():
print 'Error: failed to make directory: ' + exp_folder
return
exp_folder += '/Datafiles'
fi = File(exp_folder)
if not fi.exists():
if not fi.mkdir():
print 'Error: failed to make directory: ' + exp_folder
return
count = 0
for dinfo in dss:
count += 1
loc = dinfo.getLocation()
f = File(loc)
fsn = f.getName()
# index = fsn.rindex('.')
# if index > 0 and index <= len(fsn) - 2 :
# fsn = fsn[:index]
new_fname = 'TAIPAN_exp' + ('%(value)04d' % {'value':eid}) + '_scan' + ('%(value)04d' % {'value':count}) + '.dat'
nfn = exp_folder + '/' + new_fname
ds = df[str(loc)]
if len(ds.axes) > 0:
axes = ds.axes
else:
axes = None
ds.y_title = 'detector'
nf = open(nfn, 'w')
try:
text = '# raw_file = ' + fsn + '\n'
nf.write(text)
for item in config.SINGLE_ITEMS:
text = '# ' + item[0] + ' = '
if item[0] == 'proposal' :
text += proposal.value
elif item[0] == 'local_contact':
text += local_contact.value
elif item[0] == 'monochromator':
text += monochromator.value
elif item[0] == 'analyzer':
text += analyzer.value
elif item[0] == 'sense':
text += sense.value
elif item[0] == 'collimation':
text += collimation.value
elif item[0] == 'preset_type':
text += preset_type.value
elif item[0] == 'preset_channel':
value = str(ds[item[1]])
if value == 'Timer':
text += 'time'
elif value == 'Monitor':
text += 'monitor'
else:
text += ''
elif item[0] == 'def_x':
try:
text += ds.axes[0].title
except:
text += ''
else:
if item[1] != None:
if item[1] != None:
try:
text += str(ds[item[1]])
except:
text += item[1]
else:
text += ''
text += '\n'
nf.write(text)
# if len(ds) > 1:
# text = '# Sum_of_Counts = ' + str(ds['bm2_counts'].sum()) + '\n'
# else:
# text = '# Sum_of_Counts = ' + str(ds['bm2_counts']) + '\n'
# nf.write(text)
text = '#' + ('%(item)6s' % {'item' : 'Pt.'})
axes_titles = []
if axes != None:
for axis in axes:
at = axis.title
axes_titles.append(at)
text += ('%(item)12s' % {'item' : at})
for tit in config.MULTI_ITEMS:
if not axes_titles.__contains__(tit[0]) :
text += ('%(item)12s' % {'item' : tit[0]})
nf.write(text + '\n')
for i in xrange(ds.size):
text = ('%(item)7s' % {'item' : str(i + 1)})
if axes != None:
for axis in axes:
fmt = '.4f'
try:
at = str(axis.title)
for item in config.MULTI_ITEMS:
if item[1] == at:
fmt = item[2]
break
except:
pass
text += ('%(item)12s' % {'item' : (('%(value)' + fmt) % {'value' : axis[i]})})
for tit in config.MULTI_ITEMS:
if not axes_titles.__contains__(tit[0]) :
try:
if ds.size == 1:
text += ('%(item)12s' % {'item' : (('%(value)' + tit[2]) % {'value' : ds[tit[1]]})})
else:
text += ('%(item)12s' % {'item' : (('%(value)' + tit[2]) % {'value' : ds[tit[1]][i]})})
except:
text += ('%(item)12s' % {'item' : '0.0000'})
nf.write(text + '\n')
nf.close()
ds.close()
except:
nf.close()
ds.close()
print 'failed to process: ' + loc
print 'done'
def loadArtifacts(self, artifactFilePath):
artifactFile = File(artifactFilePath)
return Artifact(artifactFile.getName(), FileInput(artifactFile))
dark = float(options.dark or 0)
if dark > 0:
exposure = 0
# Connect to subsystems
raftsub = CCS.attachSubsystem("ats-wreb")
powersub = CCS.attachSubsystem("ats-power")
bonnsub = CCS.attachSubsystem("bonn-shutter")
# Load the sequencer
if options.sequencer:
compiler = FPGA2ModelBuilder()
file = File(options.sequencer)
model = compiler.compileFile(file)
raftsub.sendSynchCommand("loadCompiledSequencer", model, file.getName())
print "Loaded %s" % file
# Sanity checks
biasOn = raftsub.sendSynchCommand("isBackBiasOn")
if not biasOn:
print "WARNING: Back bias is not on for WREB"
state = raftsub.sendSynchCommand("getState")
alert = state.getState(AlertState)
if alert != AlertState.NOMINAL:
print "WARNING: focal-plane subsystem is in alert state %s" % alert
#alerts = raftsub.sendSynchCommand("getRaisedAlertSummary")
#if alerts.alertState!=AlertState.NOMINAL:
def batch_export():
from Experiment import config
dss = __DATASOURCE__.getSelectedDatasets()
path = selectSaveFolder()
if path == None:
return
for dinfo in dss:
loc = dinfo.getLocation()
f = File(loc)
fsn = f.getName()
index = fsn.rindex('.')
if index > 0 and index <= len(fsn) - 2 :
fsn = fsn[:index]
nfn = path + '/' + fsn + '.dat'
ds = df[str(loc)]
if len(ds.axes) > 0:
axes = ds.axes
else:
axes = None
nf = open(nfn, 'w')
try:
for item in config.SINGLE_ITEMS:
text = '# ' + item[0] + ' = '
if item[1] != None:
text += str(ds[item[1]])
text += '\n'
nf.write(text)
if len(ds) > 1:
text = '# Sum of Counts = ' + str(ds['bm2_counts'].sum()) + '\n'
else:
text = '# Sum of Counts = ' + str(ds['bm2_counts']) + '\n'
nf.write(text)
text = '#' + ('%(item)6s' % {'item' : 'Pt.'})
axes_titles = []
if axes != None:
for axis in axes:
at = axis.title
axes_titles.append(at)
text += ('%(item)12s' % {'item' : at})
for tit in config.MULTI_ITEMS:
if not axes_titles.__contains__(tit[0]) :
text += ('%(item)12s' % {'item' : tit[0]})
nf.write(text + '\n')
for i in xrange(ds.size):
text = ('%(item)7s' % {'item' : str(i)})
if axes != None:
for axis in axes:
fmt = '.1f'
try:
at = str(axis.title)
for item in config.MULTI_ITEMS:
if item[1] == at:
fmt = item[2]
break
except:
pass
text += ('%(item)12s' % {'item' : (('%(value)' + fmt) % {'value' : axis[i]})})
for tit in config.MULTI_ITEMS:
if not axes_titles.__contains__(tit[0]) :
try:
text += ('%(item)12s' % {'item' : (('%(value)' + tit[2]) % {'value' : ds[tit[1]][i]})})
except:
text += ('%(item)12s' % {'item' : '0.0000'})
nf.write(text + '\n')
nf.close()
ds.close()
except:
nf.close()
ds.close()
print 'failed to process: ' + loc
print 'done'
'.*DGC LUNZ.*', output):
try:
# EMC inquiry tool can be downloaded from ftp://ftp.emc.com/pub/symm3000/inquiry/ but we require an older
# version for it to work. The tested version:
# Inquiry utility, Version V7.3-1305 (Rev 1.0) (SIL Version V7.3.1.0 (Edit Level 1305)
# copy inq to targets
inq = 'inq.exe'
path = coll_home + "/etc/templates/commands/extension-scripts/" + inq
remotePath = os_handle.executeCommand(
'cmd.exe /C echo %TEMP%').strip()
if not remotePath.endswith('\\'):
remotePath = remotePath + '\\'
remotePath = remotePath + inq
srcInq = File(path)
tmpInq = File.createTempFile(
srcInq.getName() + '-' + os_handle.getSession().getHost() +
'-' + str(System.currentTimeMillis()), None)
if not tmpInq.exists():
tmpInq.createNewFile()
source = None
destination = None
try:
source = FileInputStream(srcInq).getChannel()
destination = FileOutputStream(tmpInq).getChannel()
destination.transferFrom(source, 0, source.size())
finally:
if source != None:
source.close()
if destination != None:
destination.close()
try:
)
fileToImport = os.path.join(fDialog.getDirectory(), fDialog.getFile())
if not os.path.exists(fileToImport) or not os.path.isfile(fileToImport):
raise Exception(
"IMPORT: Sorry, file selected to import either does not exist or is not a file"
)
fileToImport = File(fileToImport)
# set the parameters
newAccountSet = False
contextAccount = moneydance_ui.firstMainFrame.getSelectedAccount()
filename = fileToImport.getName()
extension = os.path.splitext(filename)[1].upper()
if moneydance_data is None: raise Exception("ERROR - No data")
wrapper = moneydance_ui.getCurrentAccounts() # type: AccountBookWrapper
book = moneydance_data
importWasSuccessful = True
dirName = fileToImport.getParent()
try:
fPath = fileToImport.getAbsolutePath() # type: str
fPath = fPath.upper().strip()
if not moneydance_ui.saveCurrentAccount():
raise Exception("ERROR Save Failed")
importer = moneydance_ui.getFileImporter(
from java.nio.file import Paths
from java.nio.file import Path
from java.io import File
p=Paths.get("home","pi","Desktop","jython-prac-prog","stram_jython","file2.txt")
x = p.toFile()
x = File(x.getName())
print (x.isFile())
f = File("image1.png")
print (f.getName())
print ("length",f.length())
print ("Execute",f.canExecute())
print ("read",f.canRead())
print ("write",f.canWrite())
print ("path",f.getPath())
print ("Directory",f.isDirectory())
print ("parent",f.getParent())
def CheckFileLists(lista, listb):
return
originalParent = ""
imFileNames = MultiFileDialog("Open Image Files")
tempFiles = ArrayList()
ui = nrims.UI()
ui.show()
verbose = 1;
IJ.log("Starting combine nrrds.")
for i in range(len(imFileNames)):
if i = 0:
originalParent = imFile.getParent()
IJ.log("Summing file:" + imFileNames[i])
imFile = File(imFileNames[i])
directory = imFile.getParent()
name = imFile.getName()
ui.openFile(imFile)
mimStack = ui.getmimsStackEditing()
imp = ArrayList()
images = ui.getOpenMassImages()
#compress the planes
blockSize = images[0].getNSlices()
done = mimStack.compressPlanes(blockSize)
#force to 32bit
massCorrection = nrimsData.massCorrection(ui)
massCorrection.forceFloatImages(images)
if done:
nw = nrimsData.Nrrd_Writer(ui)
dataFile = nw.save(images, System.getProperty("java.io.tmpdir"), "comp_" + name)