def run(self):
self.frame = frame = JFrame('Frame4',
size=(200, 200),
layout=None,
locationRelativeTo=None,
defaultCloseOperation=JFrame.EXIT_ON_CLOSE)
frame.addComponentListener(listener(self))
self.width = JFormattedTextField(NumberFormat.getIntegerInstance(),
columns=4)
self.height = JFormattedTextField(NumberFormat.getIntegerInstance(),
columns=4)
self.x = JFormattedTextField(NumberFormat.getIntegerInstance(),
columns=4)
self.y = JFormattedTextField(NumberFormat.getIntegerInstance(),
columns=4)
items = [[JLabel('Width:'), 11, 7], [self.width, 50, 5],
[JLabel('Height:'), 7, 31], [self.height, 50, 30],
[JLabel('X:'), 35, 55], [self.x, 50, 53],
[JLabel('Y:'), 35, 79], [self.y, 50, 78]]
for item in items:
thing = frame.add(item[0])
size = thing.getPreferredSize()
thing.setBounds(item[1], item[2], size.width, size.height)
frame.setVisible(1)
def __init__(self, menuHandles, manager, isDominant, systemPanel, isTemporal=False):
self.systemPanel = systemPanel
self.knownPops = 0
self.ignoreChanges = True
JPanel()
self.menuHandles = menuHandles
self.isDominant = isDominant
self.isTemporal = isTemporal
if isDominant:
self.setLayout(GridLayout(8, 2))
else:
self.setLayout(GridLayout(5, 2))
if isTemporal:
self.add(JLabel("Ne"))
ne = JFormattedTextField(NumberFormat.getNumberInstance(Locale.US))
ne.addPropertyChangeListener(self)
self.ne = ne
self.add(ne)
else:
self.add(JLabel("Attempted Fst"))
fst = JFormattedTextField(NumberFormat.getNumberInstance(Locale.US))
fst.addPropertyChangeListener(self)
self.fst = fst
self.add(fst)
self.add(JLabel("Expected total pops"))
pops = JFormattedTextField(NumberFormat.getIntegerInstance(Locale.US))
pops.addPropertyChangeListener(self)
# self.pops = JComboBox(['1', '2', '4', '8', '12', '16'])
self.pops = pops
self.add(self.pops)
if not isDominant and not isTemporal:
self.add(JLabel("Mutation model"))
self.mut = JComboBox(["Infinite Alleles", "Stepwise"])
self.mut.addItemListener(self)
self.add(self.mut)
self.add(JLabel("Subsample size"))
sampleSize = JFormattedTextField(NumberFormat.getIntegerInstance(Locale.US))
sampleSize.addPropertyChangeListener(self)
self.sampleSize = sampleSize
self.add(self.sampleSize)
if isDominant:
self.add(JLabel("Theta"))
theta = JFormattedTextField(NumberFormat.getNumberInstance(Locale.US))
theta.addPropertyChangeListener(self)
self.theta = theta
self.add(theta)
theta.setValue(0.1)
self.add(JLabel("Beta-a"))
beta1 = JFormattedTextField(NumberFormat.getNumberInstance(Locale.US))
beta1.addPropertyChangeListener(self)
self.beta1 = beta1
self.add(beta1)
beta1.setValue(0.25)
self.add(JLabel("Beta-b"))
beta2 = JFormattedTextField(NumberFormat.getNumberInstance(Locale.US))
beta2.addPropertyChangeListener(self)
self.beta2 = beta2
self.add(beta2)
beta2.setValue(0.25)
self.add(JLabel("Critical frequency"))
crit = JFormattedTextField(NumberFormat.getNumberInstance(Locale.US))
crit.addPropertyChangeListener(self)
self.crit = crit
self.add(crit)
crit.setValue(0.99)
run = JButton("Run!")
run.addActionListener(manager)
run.setActionCommand("RunFDist")
self.run = run
self.add(run)
cancel = JButton("Stop")
cancel.addActionListener(manager)
cancel.setActionCommand("CancelFDist")
self.cancel = cancel
def __init__(self,
menuHandles,
manager,
isDominant,
systemPanel,
isTemporal=False):
self.systemPanel = systemPanel
self.knownPops = 0
self.ignoreChanges = True
JPanel()
self.menuHandles = menuHandles
self.isDominant = isDominant
self.isTemporal = isTemporal
if isDominant:
self.setLayout(GridLayout(8, 2))
else:
self.setLayout(GridLayout(5, 2))
if isTemporal:
self.add(JLabel('Ne'))
ne = JFormattedTextField(NumberFormat.getNumberInstance(Locale.US))
ne.addPropertyChangeListener(self)
self.ne = ne
self.add(ne)
self.add(JLabel('Expected total samples'))
else:
self.add(JLabel('Attempted Fst'))
fst = JFormattedTextField(NumberFormat.getNumberInstance(
Locale.US))
fst.addPropertyChangeListener(self)
self.fst = fst
self.add(fst)
self.add(JLabel('Expected total pops'))
pops = JFormattedTextField(NumberFormat.getIntegerInstance(Locale.US))
pops.addPropertyChangeListener(self)
# self.pops = JComboBox(['1', '2', '4', '8', '12', '16'])
self.pops = pops
self.add(self.pops)
if not isDominant and not isTemporal:
self.add(JLabel('Mutation model'))
self.mut = JComboBox(['Infinite Alleles', 'Stepwise'])
self.mut.addItemListener(self)
self.add(self.mut)
else:
self.mut = None
self.add(JLabel('Subsample size'))
sampleSize = JFormattedTextField(
NumberFormat.getIntegerInstance(Locale.US))
sampleSize.addPropertyChangeListener(self)
self.sampleSize = sampleSize
self.add(self.sampleSize)
if isDominant:
self.add(JLabel('Theta'))
theta = JFormattedTextField(
NumberFormat.getNumberInstance(Locale.US))
theta.addPropertyChangeListener(self)
self.theta = theta
self.add(theta)
theta.setValue(0.1)
self.add(JLabel('Beta-a'))
beta1 = JFormattedTextField(
NumberFormat.getNumberInstance(Locale.US))
beta1.addPropertyChangeListener(self)
self.beta1 = beta1
self.add(beta1)
beta1.setValue(0.25)
self.add(JLabel('Beta-b'))
beta2 = JFormattedTextField(
NumberFormat.getNumberInstance(Locale.US))
beta2.addPropertyChangeListener(self)
self.beta2 = beta2
self.add(beta2)
beta2.setValue(0.25)
self.add(JLabel('Critical frequency'))
crit = JFormattedTextField(
NumberFormat.getNumberInstance(Locale.US))
crit.addPropertyChangeListener(self)
self.crit = crit
self.add(crit)
crit.setValue(0.99)
run = JButton('Run!')
run.addActionListener(manager)
run.setActionCommand('RunFDist')
self.run = run
self.add(run)
