def train_gan(dataf):
# Создаем модель
gen, disc, gan = build_networks()
logger = CSVLogger('loss.csv')
logger.on_train_begin()
# Запускаем обучение на 500 эпох
with h5py.File(dataf, 'r') as f:
faces = f.get('faces')
run_batches(gen, disc, gan, faces, logger, range(5000))
logger.on_train_end()
def train_gan(dataf):
gen, disc, gan = build_networks()
# Uncomment these, if you want to continue training from some snapshot.
# (or load pretrained generator weights)
#load_weights(gen, Args.genw)
#load_weights(disc, Args.discw)
logger = CSVLogger('loss.csv') # yeah, you can use callbacks independently
logger.on_train_begin() # initialize csv file
with h5py.File( dataf, 'r' ) as f :
faces = f.get( 'faces' )
run_batches(gen, disc, gan, faces, logger, range(1000000))
logger.on_train_end()
def train_gan(dataf, iters=1000000, disc_start=20, cont=False):
gen, disc, gan = build_networks()
# Uncomment these, if you want to continue training from some snapshot.
# (or load pretrained generator weights)
if cont == True:
#load_weights(gen, Args.genw)
#load_weights(disc, Args.discw)
load_weights(gen, "snapshots/{}.gen.hdf5".format(Args.batch_len - 1))
load_weights(disc, "snapshots/{}.disc.hdf5".format(Args.batch_len - 1))
logger = CSVLogger('loss.csv') # yeah, you can use callbacks independently
logger.on_train_begin() # initialize csv file
with h5py.File(dataf, 'r') as f:
faces = f.get('faces')
run_batches(gen, disc, gan, faces, logger, range(iters), disc_start)
logger.on_train_end()
def train(self):
log.info('Training Model')
self.init_train_data()
self.init_image_callback()
sl = SaveLoss(self.conf.folder)
cl = CSVLogger(self.conf.folder + '/training.csv')
cl.on_train_begin()
es = EarlyStopping('val_loss_mod2_fused', min_delta=0.01, patience=60)
es.model = self.model.Segmentor
es.on_train_begin()
loss_names = self.get_loss_names()
total_loss = {n: [] for n in loss_names}
progress_bar = Progbar(target=self.batches * self.conf.batch_size)
for self.epoch in range(self.conf.epochs):
log.info('Epoch %d/%d' % (self.epoch, self.conf.epochs))
epoch_loss = {n: [] for n in loss_names}
epoch_loss_list = []
for self.batch in range(self.batches):
self.train_batch(epoch_loss)
progress_bar.update((self.batch + 1) * self.conf.batch_size)
self.set_swa_model_weights()
for swa_m in self.get_swa_models():
swa_m.on_epoch_end(self.epoch)
self.validate(epoch_loss)
for n in loss_names:
epoch_loss_list.append((n, np.mean(epoch_loss[n])))
total_loss[n].append(np.mean(epoch_loss[n]))
log.info(
str('Epoch %d/%d: ' +
', '.join([l + ' Loss = %.5f' for l in loss_names])) %
((self.epoch, self.conf.epochs) + tuple(total_loss[l][-1]
for l in loss_names)))
logs = {l: total_loss[l][-1] for l in loss_names}
cl.model = self.model.D_Mask
cl.model.stop_training = False
cl.on_epoch_end(self.epoch, logs)
sl.on_epoch_end(self.epoch, logs)
# print images
self.img_callback.on_epoch_end(self.epoch)
self.save_models()
if self.stop_criterion(es, logs):
log.info('Finished training from early stopping criterion')
es.on_train_end(logs)
cl.on_train_end(logs)
for swa_m in self.get_swa_models():
swa_m.on_train_end()
# Set final model parameters based on SWA
self.model.D_Mask = self.swa_D_Mask.model
self.model.D_Image1 = self.swa_D_Image1.model
self.model.D_Image2 = self.swa_D_Image2.model
self.model.Encoders_Anatomy[0] = self.swa_Enc_Anatomy1.model
self.model.Encoders_Anatomy[1] = self.swa_Enc_Anatomy2.model
self.model.Enc_Modality = self.swa_Enc_Modality.model
self.model.Anatomy_Fuser = self.swa_Anatomy_Fuser.model
self.model.Segmentor = self.swa_Segmentor.model
self.model.Decoder = self.swa_Decoder.model
self.model.Balancer = self.swa_Balancer.model
self.save_models()
break
class ExtendedLogger(Callback):
val_data_metrics = {}
def __init__(self,
prediction_layer,
output_dir='./tmp',
stateful=False,
stateful_reset_interval=None,
starting_indicies=None):
if stateful and stateful_reset_interval is None:
raise ValueError(
'If model is stateful, then seq-len has to be defined!')
super(ExtendedLogger, self).__init__()
self.csv_dir = os.path.join(output_dir, 'csv')
self.tb_dir = os.path.join(output_dir, 'tensorboard')
self.pred_dir = os.path.join(output_dir, 'predictions')
self.plot_dir = os.path.join(output_dir, 'plots')
make_dir(self.csv_dir)
make_dir(self.tb_dir)
make_dir(self.plot_dir)
make_dir(self.pred_dir)
self.stateful = stateful
self.stateful_reset_interval = stateful_reset_interval
self.starting_indicies = starting_indicies
self.csv_logger = CSVLogger(os.path.join(self.csv_dir, 'run.csv'))
self.tensorboard = TensorBoard(log_dir=self.tb_dir, write_graph=True)
self.prediction_layer = prediction_layer
def set_params(self, params):
super(ExtendedLogger, self).set_params(params)
self.tensorboard.set_params(params)
self.tensorboard.batch_size = params['batch_size']
self.csv_logger.set_params(params)
def set_model(self, model):
super(ExtendedLogger, self).set_model(model)
self.tensorboard.set_model(model)
self.csv_logger.set_model(model)
def on_batch_begin(self, batch, logs=None):
self.csv_logger.on_batch_begin(batch, logs=logs)
self.tensorboard.on_batch_begin(batch, logs=logs)
def on_batch_end(self, batch, logs=None):
self.csv_logger.on_batch_end(batch, logs=logs)
self.tensorboard.on_batch_end(batch, logs=logs)
def on_train_begin(self, logs=None):
self.csv_logger.on_train_begin(logs=logs)
self.tensorboard.on_train_begin(logs=logs)
def on_train_end(self, logs=None):
self.csv_logger.on_train_end(logs=logs)
self.tensorboard.on_train_end(logs)
def on_epoch_begin(self, epoch, logs=None):
self.csv_logger.on_epoch_begin(epoch, logs=logs)
self.tensorboard.on_epoch_begin(epoch, logs=logs)
def on_epoch_end(self, epoch, logs=None):
with timeit('metrics'):
outputs = self.model.get_layer(self.prediction_layer).output
self.prediction_model = Model(inputs=self.model.input,
outputs=outputs)
batch_size = self.params['batch_size']
if isinstance(self.validation_data[-1], float):
val_data = self.validation_data[:-2]
else:
val_data = self.validation_data[:-1]
y_true = val_data[1]
callback = None
if self.stateful:
callback = ResetStatesCallback(
interval=self.stateful_reset_interval)
callback.model = self.prediction_model
y_pred = self.prediction_model.predict(val_data[:-1],
batch_size=batch_size,
verbose=1,
callback=callback)
print(y_true.shape, y_pred.shape)
self.write_prediction(epoch, y_true, y_pred)
y_true = y_true.reshape((-1, 7))
y_pred = y_pred.reshape((-1, 7))
self.save_error_histograms(epoch, y_true, y_pred)
self.save_topview_trajectories(epoch, y_true, y_pred)
new_logs = {
name: np.array(metric(y_true, y_pred))
for name, metric in self.val_data_metrics.items()
}
logs.update(new_logs)
homo_logs = self.try_add_homoscedastic_params()
logs.update(homo_logs)
self.tensorboard.validation_data = self.validation_data
self.csv_logger.validation_data = self.validation_data
self.tensorboard.on_epoch_end(epoch, logs=logs)
self.csv_logger.on_epoch_end(epoch, logs=logs)
def add_validation_metrics(self, metrics_dict):
self.val_data_metrics.update(metrics_dict)
def add_validation_metric(self, name, metric):
self.val_data_metrics[name] = metric
def try_add_homoscedastic_params(self):
homo_pos_loss_layer = search_layer(self.model, 'homo_pos_loss')
homo_quat_loss_layer = search_layer(self.model, 'homo_quat_loss')
if homo_pos_loss_layer:
homo_pos_log_vars = np.array(homo_pos_loss_layer.get_weights()[0])
homo_quat_log_vars = np.array(
homo_quat_loss_layer.get_weights()[0])
return {
'pos_log_var': np.array(homo_pos_log_vars),
'quat_log_var': np.array(homo_quat_log_vars),
}
else:
return {}
def write_prediction(self, epoch, y_true, y_pred):
filename = '{:04d}_predictions.npy'.format(epoch)
filename = os.path.join(self.pred_dir, filename)
arr = {'y_pred': y_pred, 'y_true': y_true}
np.save(filename, arr)
def save_topview_trajectories(self,
epoch,
y_true,
y_pred,
max_segment=1000):
if self.starting_indicies is None:
self.starting_indicies = {'valid': range(0, 4000, 1000) + [4000]}
for begin, end in pairwise(self.starting_indicies['valid']):
diff = end - begin
if diff > max_segment:
subindicies = range(begin, end, max_segment) + [end]
for b, e in pairwise(subindicies):
self.save_trajectory(epoch, y_true, y_pred, b, e)
self.save_trajectory(epoch, y_true, y_pred, begin, end)
def save_trajectory(self, epoch, y_true, y_pred, begin, end):
true_xy, pred_xy = y_true[begin:end, :2], y_pred[begin:end, :2]
true_q = quaternion.as_quat_array(y_true[begin:end, [6, 3, 4, 5]])
true_q = quaternion.as_euler_angles(true_q)[1]
pred_q = quaternion.as_quat_array(y_pred[begin:end, [6, 3, 4, 5]])
pred_q = quaternion.as_euler_angles(pred_q)[1]
plt.clf()
plt.plot(true_xy[:, 0], true_xy[:, 1], 'g-')
plt.plot(pred_xy[:, 0], pred_xy[:, 1], 'r-')
for ((x1, y1), (x2, y2)) in zip(true_xy, pred_xy):
plt.plot([x1, x2], [y1, y2],
color='k',
linestyle='-',
linewidth=0.3,
alpha=0.2)
plt.grid(True)
plt.xlabel('x [m]')
plt.ylabel('y [m]')
plt.title('Top-down view of trajectory')
plt.axis('equal')
x_range = (np.min(true_xy[:, 0]) - .2, np.max(true_xy[:, 0]) + .2)
y_range = (np.min(true_xy[:, 1]) - .2, np.max(true_xy[:, 1]) + .2)
plt.xlim(x_range)
plt.ylim(y_range)
filename = 'epoch={epoch:04d}_begin={begin:04d}_end={end:04d}_trajectory.pdf' \
.format(epoch=epoch, begin=begin, end=end)
filename = os.path.join(self.plot_dir, filename)
plt.savefig(filename)
def save_error_histograms(self, epoch, y_true, y_pred):
pos_errors = PoseMetrics.abs_errors_position(y_true, y_pred)
pos_errors = np.sort(pos_errors)
angle_errors = PoseMetrics.abs_errors_orienation(y_true, y_pred)
angle_errors = np.sort(angle_errors)
size = len(y_true)
ys = np.arange(size) / float(size)
plt.clf()
plt.subplot(2, 1, 1)
plt.title('Empirical CDF of absolute errors')
plt.grid(True)
plt.plot(pos_errors, ys, 'k-')
plt.xlabel('Absolute Position Error (m)')
plt.xlim(0, 1.2)
plt.subplot(2, 1, 2)
plt.grid(True)
plt.plot(angle_errors, ys, 'r-')
plt.xlabel('Absolute Angle Error (deg)')
plt.xlim(0, 70)
filename = '{:04d}_cdf.pdf'.format(epoch)
filename = os.path.join(self.plot_dir, filename)
plt.savefig(filename)
def train_model(model, data, config, include_tensorboard):
model_history = History()
model_history.on_train_begin()
saver = ModelCheckpoint(full_path(config.model_file()), verbose=1, save_best_only=True, period=1)
saver.set_model(model)
early_stopping = EarlyStopping(min_delta=config.min_delta, patience=config.patience, verbose=1)
early_stopping.set_model(model)
early_stopping.on_train_begin()
csv_logger = CSVLogger(full_path(config.csv_log_file()))
csv_logger.on_train_begin()
if include_tensorboard:
tensorborad = TensorBoard(histogram_freq=10, write_images=True)
tensorborad.set_model(model)
else:
tensorborad = Callback()
epoch = 0
stop = False
while(epoch <= config.max_epochs and stop == False):
epoch_history = History()
epoch_history.on_train_begin()
valid_sizes = []
train_sizes = []
print("Epoch:", epoch)
for dataset in data.datasets:
print("dataset:", dataset.name)
model.reset_states()
dataset.reset_generators()
valid_sizes.append(dataset.valid_generators[0].size())
train_sizes.append(dataset.train_generators[0].size())
fit_history = model.fit_generator(dataset.train_generators[0],
dataset.train_generators[0].size(),
nb_epoch=1,
verbose=0,
validation_data=dataset.valid_generators[0],
nb_val_samples=dataset.valid_generators[0].size())
epoch_history.on_epoch_end(epoch, last_logs(fit_history))
train_sizes.append(dataset.train_generators[1].size())
fit_history = model.fit_generator(dataset.train_generators[1],
dataset.train_generators[1].size(),
nb_epoch=1,
verbose=0)
epoch_history.on_epoch_end(epoch, last_logs(fit_history))
epoch_logs = average_logs(epoch_history, train_sizes, valid_sizes)
model_history.on_epoch_end(epoch, logs=epoch_logs)
saver.on_epoch_end(epoch, logs=epoch_logs)
early_stopping.on_epoch_end(epoch, epoch_logs)
csv_logger.on_epoch_end(epoch, epoch_logs)
tensorborad.on_epoch_end(epoch, epoch_logs)
epoch+= 1
if early_stopping.stopped_epoch > 0:
stop = True
early_stopping.on_train_end()
csv_logger.on_train_end()
tensorborad.on_train_end({})