def test_qc_warnings_2(self):
# Large assembly size.
warnings = get_qc_warnings(10000000, 250000, 'no', True)
self.assertEqual(warnings, 'total_size')
def test_qc_warnings_8(self):
# All three warnings.
warnings = get_qc_warnings(2000000, 1000, 'yes (1000)', True)
self.assertEqual(warnings, 'total_size,N50,ambiguous_bases')
def test_qc_warnings_1(self):
# A perfectly nice assembly - yields no warnings.
warnings = get_qc_warnings(5500000, 250000, 'no', True)
self.assertEqual(warnings, '-')
def test_qc_warnings_7(self):
# Has ambiguous bases
warnings = get_qc_warnings(5500000, 250000, 'yes (50)', True)
self.assertEqual(warnings, 'ambiguous_bases')
def test_qc_warnings_6(self):
# Small N50.
warnings = get_qc_warnings(5500000, 1000, 'no', True)
self.assertEqual(warnings, 'N50')
def test_qc_warnings_5(self):
# Small assembly size, but not KpSC so no warning.
warnings = get_qc_warnings(2000000, 250000, 'no', False)
self.assertEqual(warnings, '-')
def test_qc_warnings_4(self):
# Small assembly size.
warnings = get_qc_warnings(2000000, 250000, 'no', True)
self.assertEqual(warnings, 'total_size')
def test_qc_warnings_3(self):
# Large assembly size, but not KpSC so no warning.
warnings = get_qc_warnings(10000000, 250000, 'no', False)
self.assertEqual(warnings, '-')