def deck_calibration_test(self):
"""
Verify calibration offsets.
"""
config = {
'calibration': {
'a1': {
'type': 'tiprack_P2',
'x': 10,
'y': 11,
'z': 12
}
}
}
deck = Deck(a1=tipracks.Tiprack())
deck.configure(config)
margin = self.expected_margin
rack = deck.slot('a1')
a1 = rack.tip('a1').coordinates()
b2 = rack.tip('b2').coordinates()
self.assertEqual(a1, (10, 11, 12))
self.assertEqual(b2, (10 + margin, 11 + margin, 12))
def deck_calibration_test(self):
"""
Deck calibration.
"""
config = {
'calibration': {
'a1': {
'type': 'reservoir',
'x': 10,
'y': 11,
'z': 12
}
}
}
deck = Deck(a1=Reservoir())
deck.configure(config)
margin = self.expected_margin
reservoir = deck.slot('a1')
col1 = reservoir.row(1).coordinates()
col2 = reservoir.row(2).coordinates()
self.assertEqual(col1, (10, 11, 12))
self.assertEqual(col2, (10, 11 + margin, 12))
def deck_calibration_test(self):
"""Calibrates through deck."""
config = {
'calibration': {
'a1': {
'type': 'microplate_96',
'x': 10,
'y': 11,
'z': 12
}
}
}
deck = Deck(a1=Microplate())
deck.configure(config)
margin = self.expected_margin
plate = deck.slot('a1')
a1 = plate.well('a1').coordinates()
b2 = plate.well('b2').coordinates()
self.assertEqual(a1, (10, 11, 12))
self.assertEqual(b2, (10 + margin, 11 + margin, 12))
def test_address(self):
""" Address. """
plate = Microplate()
self.assertEqual(plate.well('A1').address, [(0, 0)])
self.assertEqual(plate.well('a1').human_address, 'A1')
deck = Deck()
deck.add_module('A1', 'microplate')
well = deck.slot('A1').well('B4')
self.assertEqual(well.human_address, 'A1:B4')
self.assertEqual(well.address, [(0, 0), (1, 3)])
def setUp(self):
self.deck = Deck()
class DeckTest(unittest.TestCase):
def setUp(self):
self.deck = Deck()
def test_module_add(self):
"""Add a module to the deck."""
self.deck.add_modules(a1=Microplate())
plate = self.deck.slot('a1')
self.assertTrue(isinstance(plate, Microplate))
def test_module_add_by_container_name(self):
""" Add a module to deck by container name. """
self.deck.add_module('a1', 'microplate.96')
plate = self.deck.slot('a1')
self.assertTrue(isinstance(plate, Microplate))
def test_modules_add_by_container_name(self):
""" Add modules to deck by container name. """
self.deck.add_modules(a1='microplate.96', a2='microplate.96.deepwell')
self.assertEqual(self.deck.slot('a1').name, 'microplate.96')
self.assertEqual(self.deck.slot('a2').name, 'microplate.96.deepwell')
def test_module_add_to_filled_slot(self):
"""Raise when adding module to filled deck slot."""
self.deck.add_modules(a1=Microplate())
with self.assertRaises(x.ContainerConflict):
self.deck.add_modules(a1=Microplate())
def test_module_access_empty_slot(self):
"""Raise when accessing empty deck slot."""
with self.assertRaises(x.ContainerMissing):
self.deck.slot('a1')
def test_slot_out_of_range(self):
"""Raise when accessing out-of-range deck slot."""
with self.assertRaises(x.SlotMissing):
self.deck.slot('z1')
def test_find_module(self):
self.deck.add_module('a1', 'microplate.96')
plate = self.deck.find_module(name='microplate.96')
self.assertIsInstance(plate, Microplate)
self.deck.add_module('a2', 'tiprack.p10')
rack = self.deck.find_module(size='P10')
self.assertIsInstance(rack, Tiprack)
def test_module_address(self):
""" Return module address as list of tuples. """
self.deck.add_module('B3', 'microplate.96')
slot = self.deck.slot('B3')
well = slot.well('H2')
self.assertEqual(slot.address, [(1, 2)])
self.assertEqual(well.address, [(1, 2), (7, 1)])
def setUp(self):
self.deck = Deck()
class DeckTest(unittest.TestCase):
def setUp(self):
self.deck = Deck()
def test_module_add(self):
"""Add a module to the deck."""
self.deck.add_modules(a1=Microplate())
plate = self.deck.slot('a1')
self.assertTrue(isinstance(plate, Microplate))
def test_module_add_by_container_name(self):
""" Add a module to deck by container name. """
self.deck.add_module('a1', 'microplate.96')
plate = self.deck.slot('a1')
self.assertTrue(isinstance(plate, Microplate))
def test_modules_add_by_container_name(self):
""" Add modules to deck by container name. """
self.deck.add_modules(
a1='microplate.96',
a2='microplate.96.deepwell'
)
self.assertEqual(self.deck.slot('a1').name, 'microplate.96')
self.assertEqual(self.deck.slot('a2').name, 'microplate.96.deepwell')
def test_module_add_to_filled_slot(self):
"""Raise when adding module to filled deck slot."""
self.deck.add_modules(a1=Microplate())
with self.assertRaises(x.ContainerConflict):
self.deck.add_modules(a1=Microplate())
def test_module_access_empty_slot(self):
"""Raise when accessing empty deck slot."""
with self.assertRaises(x.ContainerMissing):
self.deck.slot('a1')
def test_slot_out_of_range(self):
"""Raise when accessing out-of-range deck slot."""
with self.assertRaises(x.SlotMissing):
self.deck.slot('z1')
def test_find_module(self):
self.deck.add_module('a1', 'microplate.96')
plate = self.deck.find_module(name='microplate.96')
self.assertIsInstance(plate, Microplate)
self.deck.add_module('a2', 'tiprack.p10')
rack = self.deck.find_module(size='P10')
self.assertIsInstance(rack, Tiprack)
def test_module_address(self):
""" Return module address as list of tuples. """
self.deck.add_module('B3', 'microplate.96')
slot = self.deck.slot('B3')
well = slot.well('H2')
self.assertEqual(slot.address, [(1, 2)])
self.assertEqual(well.address, [(1, 2), (7, 1)])