def property_setup(self, properties):
properties = super(EarlyVisionModel, self).property_setup(properties)
sheet.SettlingCFSheet.joint_norm_fn = sheet.optimized.compute_joint_norm_totals_opt
center_polarities = ['On', 'Off']
# Useful for setting up sheets
properties['polarities'] = lancet.List('polarity', center_polarities)
properties['eyes'] = (lancet.List('eye', ['Left', 'Right']) if
properties['binocular'] else lancet.Identity())
properties['SFs'] = (lancet.List('SF', properties['SF']) if
max(properties['SF']) > 1 else lancet.Identity())
return properties
def property_setup(self, properties):
properties = super(ColorEarlyVisionModel, self).property_setup(properties)
properties['SF']=range(1,self.sf_channels+1) if 'sf' in self.dims and 'cr' not in self.dims else \
range(2,self.sf_channels+1) if 'sf' in self.dims and 'cr' in self.dims else [1]
properties['SFs'] = (lancet.List('SF', properties['SF'])
if max(properties['SF'])>1 else lancet.Identity())
cr = 'cr' in self.dims
#TFALERT: Dichromatic simulations have not been tested!
opponent_types_center = ['Red','Green','Blue','RedGreenBlue'] if cr \
and self.color_sim_type=='Trichromatic' else \
['Green','Blue','GreenBlue'] if cr \
and self.color_sim_type=='Dichromatic' else []
opponent_types_surround = ['Green','Red','RedGreen','RedGreenBlue'] if cr \
and self.color_sim_type=='Trichromatic' else \
['Green','Green','GreenBlue'] if cr \
and self.color_sim_type=='Dichromatic' else []
self.ColorToChannel = {'Red':0, 'Green':1, 'Blue':2} if cr else {}
# Definitions useful for setting up sheets
opponent_specs =[dict(opponent=el1, surround=el2) for el1, el2
in zip(opponent_types_center,
opponent_types_surround)]
properties['opponents'] = (lancet.Args(specs=opponent_specs)
if opponent_types_center else lancet.Identity())
return properties
def test_outputs_captured_correctly(self):
# Given
nargs = 2
args = lancet.List('c', ["print(%d)" % i for i in range(nargs)])
cmd = lancet.ShellCommand(executable=sys.executable)
lancet.Launcher('test', args, cmd, output_directory=self.output_dir)()
# When
o = lancet.Output(self.output_dir)
latest = o[-1]
# Then
self.assertEqual(len(o), 1)
expected = ('timestamp', 'path', 'tids', 'specs', 'stdout', 'stderr',
'log', 'info')
self.assertEqual(latest._fields, expected)
self.assertEqual(latest.tids, list(range(nargs)))
self.assertEqual(len(latest.stdout), nargs)
self.assertEqual(len(latest.stderr), nargs)
expected = [{'c': 'print(%d)' % i} for i in range(nargs)]
self.assertEqual(latest.specs, expected)
# Gather the stdout data.
result = [int(open(x).read().strip()) for x in latest.stdout]
expected = list(range(nargs))
self.assertEqual(result, expected)
# We should be able to iterate over the output.
paths = [x.path for x in o]
expected = [latest.path]
self.assertEqual(paths, expected)
def setup_attributes(self, attrs):
attrs = super(EarlyVisionModel, self).setup_attributes(attrs)
sheet.SettlingCFSheet.joint_norm_fn = sheet.optimized.compute_joint_norm_totals_opt
center_polarities = ['On', 'Off']
# Useful for setting up sheets
attrs.Args = {
'eyes':
lancet.List('eye', attrs.Eyes)
if len(attrs.Eyes) > 1 else lancet.Identity(),
'polarities':
lancet.List('polarity', center_polarities),
'SFs':
lancet.List('SF', attrs.SF)
if max(attrs.SF) > 1 else lancet.Identity()
}
return attrs
def setup_attributes(self, attrs):
attrs = super(ColorEarlyVisionModel, self).setup_attributes(attrs)
cr = 'cr' in self.dims
opponent_types_center = ['Red', 'Green', 'Blue', 'RedGreenBlue'
] if cr else []
opponent_types_surround = ['Green', 'Red', 'RedGreen', 'RedGreenBlue'
] if cr else []
cone_types = ['Red', 'Green', 'Blue'] if cr else []
# Definitions useful for setting up sheets
opponent_specs = [
dict(opponent=el1, surround=el2)
for el1, el2 in zip(opponent_types_center, opponent_types_surround)
]
attrs.Args['opponents'] = (lancet.Args(
specs=opponent_specs) if opponent_types_center else
lancet.Identity())
attrs.Args['cones'] = (lancet.List('cone', cone_types)
if cone_types else lancet.Identity())
return attrs
def test_output_supports_expansions(self):
# Given
nargs = 2
args = lancet.List('c', ["print(%d)" % i for i in range(nargs)])
cmd = lancet.ShellCommand(executable=sys.executable)
lancet.Launcher('test', args, cmd, output_directory=self.output_dir)()
# This is useful if one needs to generate a separate file for each
# invocation. Here a filename is generated for each case run.
expansions = {'filename': lancet.ShellCommand.LongFilename('.png')}
# When
o = lancet.Output(self.output_dir, expansions=expansions)
latest = o[-1]
# Then.
self.assertEqual(len(o), 1)
expected = ('timestamp', 'path', 'tids', 'specs', 'stdout', 'stderr',
'log', 'info', 'filename')
self.assertEqual(latest._fields, expected)
self.assertEqual(len(latest.filename), 2)
self.assertTrue(all([x.endswith('.png') for x in latest.filename]))
