def _main(): """Entry point.""" cli_args = args.parse_args() # Build the base image first docker.build("-t", "py-deploy-base-image", "-f", BASE_DOCKERFILE_PATH, SCRIPT_DIR) # Extend with specific image docker.build("-t", cli_args.image, "-f", cli_args.dockerfile, cli_args.workdir) # Run the container docker.run("--name", cli_args.container, cli_args.image) # Copy artifacts if required if cli_args.cp: docker.cp("{}:{}".format(cli_args.container, cli_args.cp), cli_args.workdir) # Clean up docker.rm(cli_args.container)
def main(): args = parse_args() s = requests.session() s.verify = False if args.notlscheck else True atexit.register(lambda: s.close()) r = s.get( f'{args.prometheus}/api/v1/query_range?query={args.query}&start={args.start}Z&end={args.end}&step=1s' ) r.raise_for_status() over = 0 under = 0 total_nonnull = 0 run_time = 0 min_tstp = sys.maxsize max_tstp = -sys.maxsize for pod in r.json()['data']['result']: for v in pod['values']: # Time bound detection if v[0] < min_tstp: min_tstp = v[0] if v[0] > max_tstp: max_tstp = v[0] m = float(v[1]) # Value if m > args.value: over += (m - args.value) elif (m < args.value) and (m != 0): under += (args.value - m) if m != 0: total_nonnull += 1 run_time += 1 user_time_duration = max_tstp - min_tstp print("Average pods running: %.3f" % (run_time / user_time_duration)) print("Overusage: %d%%" % (over * 100 / total_nonnull)) print("Underusage: %d%%" % (under * 100 / total_nonnull))
Description: Search through KEGG KGML Pathway map files for a given substring """ from src.biodata import * from src.config import load_configuration from src import arguments, error from sys import stdout, exit from lib.pygrep import grep from lib.args import parse_args from os.path import isfile import threading # Argument handling args = parse_args("search", [('o', 'search by organism', [str, str], arguments.organism), ('m', 'search by map file', [str, str], arguments.mapfile), ('l', 'list organisms', [], arguments.listOrganisms)]) def organism_file_path(organism): "Construct path to organism file" return config['map_file_directory'] + "/" + organism + '*' def map_file_path(mapfile): "Construct path to map file" return config['map_file_directory'] + "/" + mapfile def print_results(lines): if len(lines) > 0:
from src.config import load_configuration from src import error from sys import stdout, exit from lib.args import parse_args from os.path import isfile import threading import sys sys.path.append(sys.path[0]+'/pkg') # Argument handling args = parse_args("download", [('o', 'download organism', [str], "Download all files for a given organism"), ('u', 'update', [], "Update any existing map files"), ('r', 'retry', [], "Retry any previously failed map file url's"), ('a', 'download all', [], "Download all available map files for every organism"), ('l', 'list organisms', [], "List all organism codes")]) def remote_resource_previously_failed(url): if isfile(config['failed_list']): return url in open(config['failed_list'], 'r').read() return False def multi_thread_download(links, forceOverwrite): def dl(l, o): download(l, o, forceOverwrite) for item in links: # Need to add ability to skip