def deploy_denoiser(app, setup_dir):
os.rmdir(app.deploy_dir)
util.copytree(setup_dir, app.deploy_dir)
srcName = 'FlowgramAli_4frame_linux_x86_64'
srcPath = os.path.join(app.deploy_dir, 'FlowgramAlignment')
srcPath = os.path.join(srcPath, srcName)
destName = 'FlowgramAli_4frame'
destPath = os.path.join(app.deploy_dir, 'bin')
destPath = os.path.join(destPath, destName)
rc = util.move_file(srcPath, destPath)
if rc != 0:
return rc
update_denoiser_settings(app.deploy_dir)
baseDir = os.path.join(app.deploy_dir, 'Denoiser')
files = ['denoiser.py', 'preprocess.py', 'denoise_postprocess.py', \
'make_cluster_jobs.py']
for aFile in files:
filePath = os.path.join(baseDir, aFile)
rc = util.make_file_user_executable(filePath)
if rc != 0:
app.log.error('Problem making %s executable.' % filePath)
return 0
def deploy_uclust(app, setup_dir):
old_path = os.path.join(app.tmp_dir, app.release_file_name)
new_path = os.path.join(app.deploy_dir, 'uclust')
rc = util.move_file(old_path, new_path)
if rc == 0:
rc = util.make_file_user_executable(new_path)
if rc == 0:
return 0
return 1