def submitjob(ctx, seq="", fixtop="", jobname="", email=""):#{{{
seq = seq + "\n" #force add a new line for correct parsing the fasta file
seqinfo = {}
filtered_seq = webcom.ValidateSeq(seq, seqinfo, g_params)
# ValidateFixtop(fixtop) #to be implemented
jobid = "None"
url = "None"
numseq_str = "%d"%(seqinfo['numseq'])
warninfo = seqinfo['warninfo']
errinfo = ""
# print "\n\nreq\n", dir(ctx.transport.req) #debug
# print "\n\n", ctx.transport.req.META['REMOTE_ADDR'] #debug
# print "\n\n", ctx.transport.req.META['HTTP_HOST'] #debug
if filtered_seq == "":
errinfo = seqinfo['errinfo']
else:
soap_req = ctx.transport.req
try:
client_ip = soap_req.META['REMOTE_ADDR']
except:
client_ip = ""
try:
hostname = soap_req.META['HTTP_HOST']
except:
hostname = ""
# print client_ip
# print hostname
seqinfo['jobname'] = jobname
seqinfo['email'] = email
seqinfo['fixtop'] = fixtop
seqinfo['date'] = datetime.datetime.now().strftime("%Y-%m-%d %H:%M:%S")
seqinfo['client_ip'] = client_ip
seqinfo['hostname'] = hostname
seqinfo['method_submission'] = "wsdl"
seqinfo['isForceRun'] = False # disable isForceRun if submitted by WSDL
jobid = RunQuery_wsdl(seq, filtered_seq, seqinfo)
if jobid == "":
errinfo = "Failed to submit your job to the queue\n"+seqinfo['errinfo']
else:
log_record = "%s\t%s\t%s\t%s\t%d\t%s\t%s\t%s\n"%(seqinfo['date'], jobid,
seqinfo['client_ip'], seqinfo['numseq'],
len(seq),seqinfo['jobname'], seqinfo['email'],
seqinfo['method_submission'])
main_logfile_query = "%s/%s/%s"%(SITE_ROOT, "static/log", "submitted_seq.log")
myfunc.WriteFile(log_record, main_logfile_query, "a")
divided_logfile_query = "%s/%s/%s"%(SITE_ROOT, "static/log/divided",
"%s_submitted_seq.log"%(seqinfo['client_ip']))
if seqinfo['client_ip'] != "":
myfunc.WriteFile(log_record, divided_logfile_query, "a")
url = "http://" + hostname + g_params['BASEURL'] + "result/%s"%(jobid)
file_seq_warning = "%s/%s/%s/%s"%(SITE_ROOT, "static/result", jobid, "query.warn.txt")
if seqinfo['warninfo'] != "":
myfunc.WriteFile(seqinfo['warninfo'], file_seq_warning, "a")
errinfo = seqinfo['errinfo']
for s in [jobid, url, numseq_str, errinfo, warninfo]:
yield s
def submitjob_remote(ctx, seq="", fixtop="", jobname="", email="",#{{{
numseq_this_user="", isforcerun=""):
seq = seq + "\n" #force add a new line for correct parsing the fasta file
seqinfo = {}
filtered_seq = webcom.ValidateSeq(seq, seqinfo, g_params)
# ValidateFixtop(fixtop) #to be implemented
if numseq_this_user != "" and numseq_this_user.isdigit():
seqinfo['numseq_this_user'] = int(numseq_this_user)
else:
seqinfo['numseq_this_user'] = 1
numseq_str = "%d"%(seqinfo['numseq'])
warninfo = seqinfo['warninfo']
# print "\n\nreq\n", dir(ctx.transport.req) #debug
# print "\n\n", ctx.transport.req.META['REMOTE_ADDR'] #debug
# print "\n\n", ctx.transport.req.META['HTTP_HOST'] #debug
jobid = "None"
url = "None"
if filtered_seq == "":
errinfo = seqinfo['errinfo']
else:
soap_req = ctx.transport.req
try:
client_ip = soap_req.META['REMOTE_ADDR']
except:
client_ip = ""
try:
hostname = soap_req.META['HTTP_HOST']
except:
hostname = ""
# print client_ip
# print hostname
seqinfo['jobname'] = jobname
seqinfo['email'] = email
seqinfo['fixtop'] = fixtop
seqinfo['date'] = datetime.datetime.now().strftime("%Y-%m-%d %H:%M:%S")
seqinfo['client_ip'] = client_ip
seqinfo['hostname'] = hostname
seqinfo['method_submission'] = "wsdl"
# for this method, wsdl is called only by the daemon script, isForceRun can be
# set by the argument
if isforcerun.upper()[:1] == "T":
seqinfo['isForceRun'] = True
else:
seqinfo['isForceRun'] = False
jobid = RunQuery_wsdl_local(seq, filtered_seq, seqinfo)
if jobid == "":
errinfo = "Failed to submit your job to the queue\n"+seqinfo['errinfo']
else:
log_record = "%s\t%s\t%s\t%s\t%d\t%s\t%s\t%s\n"%(seqinfo['date'], jobid,
seqinfo['client_ip'], seqinfo['numseq'],
len(seq),seqinfo['jobname'], seqinfo['email'],
seqinfo['method_submission'])
main_logfile_query = "%s/%s/%s"%(SITE_ROOT, "static/log", "submitted_seq.log")
myfunc.WriteFile(log_record, main_logfile_query, "a")
divided_logfile_query = "%s/%s/%s"%(SITE_ROOT, "static/log/divided",
"%s_submitted_seq.log"%(seqinfo['client_ip']))
if seqinfo['client_ip'] != "":
myfunc.WriteFile(log_record, divided_logfile_query, "a")
url = "http://" + hostname + g_params['BASEURL'] + "result/%s"%(jobid)
file_seq_warning = "%s/%s/%s/%s"%(SITE_ROOT, "static/result", jobid, "query.warn.txt")
if seqinfo['warninfo'] != "":
myfunc.WriteFile(seqinfo['warninfo'], file_seq_warning, "a")
errinfo = seqinfo['errinfo']
for s in [jobid, url, numseq_str, errinfo, warninfo]:
yield s