def test_duplicate_data_many():
with assert_warns_regex(
RuntimeWarning,
"Detected zero distance between ([0-9]*) pairs of samples. Consider removing duplicates to avoid errors in downstream processing.",
):
build_graph(np.vstack([data, data[:21]]),
n_pca=20,
decay=10,
thresh=1e-4)
def test_duplicate_data():
with assert_warns_regex(
RuntimeWarning,
r"Detected zero distance between samples ([0-9and,\s]*). Consider removing duplicates to avoid errors in downstream processing.",
):
build_graph(np.vstack([data, data[:10]]), n_pca=20, decay=10, thresh=0)
def test_duplicate_data():
build_graph(np.vstack([data, data[:10]]),
n_pca=20,
decay=10,
thresh=1e-4)
def test_many_duplicate_data():
build_graph(np.vstack([data, data]), n_pca=20, decay=10, thresh=0)