def generate_qc_page(user_settings, config, qc_dir, scene_dir, qc_html,
temp_dir, title_formatter):
sbref_nii = change_sbref_palette(user_settings, temp_dir)
dtseries_sm = get_smoothed_dtseries_file(user_settings, temp_dir)
contents = config.get_template_contents()
scene_file = personalize_template(contents, scene_dir, user_settings,
sbref_nii, dtseries_sm)
ciftify.utils.make_dir(qc_dir)
with open(qc_html, 'w') as qc_page:
ciftify.html.add_page_header(qc_page,
config,
user_settings.qc_mode,
subject=user_settings.subject,
path='..')
wb_logging = 'INFO' if user_settings.debug_mode else 'WARNING'
ciftify.html.add_images(qc_page,
qc_dir,
config.images,
scene_file,
wb_logging=wb_logging,
add_titles=True,
title_formatter=title_formatter)
def generate_qc_page(user_settings, config, qc_dir, scene_dir, qc_html):
contents = config.get_template_contents()
scene_file = personalize_template(contents, scene_dir, user_settings)
change_sbref_palette(user_settings)
if DRYRUN:
return
ciftify.utilities.make_dir(qc_dir)
with open(qc_html, 'w') as qc_page:
ciftify.html.add_page_header(qc_page, config, user_settings.qc_mode,
subject=user_settings.subject, path='..')
ciftify.html.add_images(qc_page, qc_dir, config.images, scene_file)