Esempi in Python per reorder_matrix

Esempio n. 1

def main(matrix, genomes):
    transpose_matrix(matrix)
    names = []
    for line in open(genomes, "rU"):
        newline = line.strip()
        fields = newline.split()
        names.append(fields)
    reorder_matrix("tmp.matrix", names)
    os.system("rm tmp.matrix")

Esempio n. 2

File: reorder_matrix_by_list.py Progetto: jasonsahl/LS-BSR

def main(matrix, genomes):
    transpose_matrix(matrix)
    names = []
    with open(genomes) as my_genomes:
        for line in my_genomes:
            newline = line.strip()
            fields = newline.split()
            names.append(fields)
    reorder_matrix("tmp.matrix",names)
    os.system("rm tmp.matrix")

Esempio n. 3

File: reorder_BSR_matrix_by_tree.py Progetto: jasonsahl/LS-BSR

def main(matrix, tree):
    transpose_matrix(matrix)
    names = parse_tree(tree)
    reorder_matrix("tmp.matrix", names)
    os.system("rm tmp.matrix")

Esempio n. 4

File: reorder_matrix_by_list.py Progetto: davised/LS-BSR

def main(matrix, genomes):
    transpose_matrix(matrix)
    reorder_matrix("tmp.matrix", genomes)

Esempio n. 5

def main(matrix, tree):
    transpose_matrix(matrix)
    names = parse_tree(tree)
    reorder_matrix("tmp.matrix", names)
    os.system("rm tmp.matrix")

Esempio n. 6

File: reorder_matrix_by_list.py Progetto: pryratess/LS-BSR

def main(matrix, genomes):
    transpose_matrix(matrix)
    reorder_matrix("tmp.matrix", genomes)