def init_norm(config, save_path):
config['data']['normalization'] = None
data = Data(**config['data'])
stream = data.get_stream("train", batches=False, shuffle=False)
normalization = Normalization(stream, data.recordings_source)
with open(save_path, "wb") as dst:
cPickle.dump(normalization, dst)
def sample(config, params, load_path, part):
data = Data(**config['data'])
recognizer = SpeechRecognizer(data.recordings_source,
data.labels_source,
data.eos_label,
data.num_features,
data.num_labels,
character_map=data.character_map,
name='recognizer',
**config["net"])
recognizer.load_params(load_path)
dataset = data.get_dataset(part, add_sources=(data.uttid_source, ))
stream = data.get_stream(part,
batches=False,
shuffle=False,
add_sources=(data.uttid_source, ))
it = stream.get_epoch_iterator()
print_to = sys.stdout
for number, data in enumerate(it):
print("Utterance {} ({})".format(number, data[2]), file=print_to)
groundtruth_text = dataset.pretty_print(data[1])
print("Groundtruth:", groundtruth_text, file=print_to)
sample = recognizer.sample(data[0])['outputs'][:, 0]
recognized_text = dataset.pretty_print(sample)
print("Recognized:", recognized_text, file=print_to)
def init_norm(config, save_path):
config['data']['normalization'] = None
data = Data(**config['data'])
stream = data.get_stream("train", batches=False, shuffle=False)
normalization = Normalization(stream, data.recordings_source)
with open(save_path, "wb") as dst:
cPickle.dump(normalization, dst)
def sample(config, params, load_path, part):
data = Data(**config['data'])
recognizer = create_model(config, data, load_path)
dataset = data.get_dataset(part, add_sources=('uttids',))
stream = data.get_stream(part, batches=False, shuffle=False,
add_sources=('uttids',))
it = stream.get_epoch_iterator(as_dict=True)
print_to = sys.stdout
for number, data in enumerate(it):
uttids = data.pop('uttids', None)
print("Utterance {} ({})".format(number, uttids),
file=print_to)
raw_groundtruth = data.pop('labels')
groundtruth_text = dataset.pretty_print(raw_groundtruth, data)
print("Groundtruth:", groundtruth_text, file=print_to)
sample = recognizer.sample(data)[:, 0]
recognized_text = dataset.pretty_print(sample, data)
print("Recognized:", recognized_text, file=print_to)
def sample(config, params, load_path, part):
data = Data(**config['data'])
recognizer = SpeechRecognizer(
data.recordings_source, data.labels_source,
data.eos_label, data.num_features, data.num_labels,
character_map=data.character_map,
name='recognizer', **config["net"])
recognizer.load_params(load_path)
dataset = data.get_dataset(part, add_sources=(data.uttid_source,))
stream = data.get_stream(part, batches=False, shuffle=False,
add_sources=(data.uttid_source,))
it = stream.get_epoch_iterator()
print_to = sys.stdout
for number, data in enumerate(it):
print("Utterance {} ({})".format(number, data[2]), file=print_to)
groundtruth_text = dataset.pretty_print(data[1])
print("Groundtruth:", groundtruth_text, file=print_to)
sample = recognizer.sample(data[0])['outputs'][:, 0]
recognized_text = dataset.pretty_print(sample)
print("Recognized:", recognized_text, file=print_to)
def sample(config, params, load_path, part):
data = Data(**config['data'])
recognizer = create_model(config, data, load_path)
dataset = data.get_dataset(part, add_sources=('uttids', ))
stream = data.get_stream(part,
batches=False,
shuffle=False,
add_sources=('uttids', ))
it = stream.get_epoch_iterator(as_dict=True)
print_to = sys.stdout
for number, data in enumerate(it):
uttids = data.pop('uttids', None)
print("Utterance {} ({})".format(number, uttids), file=print_to)
raw_groundtruth = data.pop('labels')
groundtruth_text = dataset.pretty_print(raw_groundtruth, data)
print("Groundtruth:", groundtruth_text, file=print_to)
sample = recognizer.sample(data)[:, 0]
recognized_text = dataset.pretty_print(sample, data)
print("Recognized:", recognized_text, file=print_to)
def show_data(config):
data = Data(**config['data'])
stream = data.get_stream("train")
batch = next(stream.get_epoch_iterator(as_dict=True))
import IPython
IPython.embed()
def search(config, params, load_path, part, decode_only, report, decoded_save,
nll_only, seed):
import matplotlib
matplotlib.use("Agg")
from matplotlib import pyplot
from lvsr.notebook import show_alignment
data = Data(**config['data'])
search_conf = config['monitoring']['search']
logger.info("Recognizer initialization started")
recognizer = create_model(config, data, load_path)
recognizer.init_beam_search(search_conf['beam_size'])
logger.info("Recognizer is initialized")
has_uttids = 'uttids' in data.info_dataset.provides_sources
add_sources = ('uttids', ) if has_uttids else ()
dataset = data.get_dataset(part, add_sources)
stream = data.get_stream(part,
batches=False,
shuffle=part == 'train',
add_sources=add_sources,
num_examples=500 if part == 'train' else None,
seed=seed)
it = stream.get_epoch_iterator(as_dict=True)
if decode_only is not None:
decode_only = eval(decode_only)
weights = tensor.matrix('weights')
weight_statistics = theano.function([weights], [
weights_std(weights.dimshuffle(0, 'x', 1)),
monotonicity_penalty(weights.dimshuffle(0, 'x', 1))
])
print_to = sys.stdout
if report:
alignments_path = os.path.join(report, "alignments")
if not os.path.exists(report):
os.mkdir(report)
os.mkdir(alignments_path)
print_to = open(os.path.join(report, "report.txt"), 'w')
decoded_file = None
if decoded_save:
decoded_file = open(decoded_save, 'w')
num_examples = .0
total_nll = .0
total_errors = .0
total_length = .0
total_wer_errors = .0
total_word_length = 0.
if config.get('vocabulary'):
with open(os.path.expandvars(config['vocabulary'])) as f:
vocabulary = dict(line.split() for line in f.readlines())
def to_words(chars):
words = chars.split()
words = [
vocabulary[word] if word in vocabulary else vocabulary['<UNK>']
for word in words
]
return words
for number, example in enumerate(it):
if decode_only and number not in decode_only:
continue
uttids = example.pop('uttids', None)
raw_groundtruth = example.pop('labels')
required_inputs = dict_subset(example, recognizer.inputs.keys())
print("Utterance {} ({})".format(number, uttids), file=print_to)
groundtruth = dataset.decode(raw_groundtruth)
groundtruth_text = dataset.pretty_print(raw_groundtruth, example)
costs_groundtruth, weights_groundtruth = recognizer.analyze(
inputs=required_inputs,
groundtruth=raw_groundtruth,
prediction=raw_groundtruth)[:2]
weight_std_groundtruth, mono_penalty_groundtruth = weight_statistics(
weights_groundtruth)
total_nll += costs_groundtruth.sum()
num_examples += 1
print("Groundtruth:", groundtruth_text, file=print_to)
print("Groundtruth cost:", costs_groundtruth.sum(), file=print_to)
print("Groundtruth weight std:", weight_std_groundtruth, file=print_to)
print("Groundtruth monotonicity penalty:",
mono_penalty_groundtruth,
file=print_to)
print("Average groundtruth cost: {}".format(total_nll / num_examples),
file=print_to)
if nll_only:
print_to.flush()
continue
before = time.time()
try:
search_kwargs = dict(
char_discount=search_conf.get('char_discount'),
round_to_inf=search_conf.get('round_to_inf'),
stop_on=search_conf.get('stop_on'),
validate_solution_function=getattr(data.info_dataset,
'validate_solution', None))
search_kwargs = {k: v for k, v in search_kwargs.items() if v}
outputs, search_costs = recognizer.beam_search(
required_inputs, **search_kwargs)
except CandidateNotFoundError:
logger.error('Candidate not found!')
outputs = [[]]
search_costs = [[numpy.NaN]]
took = time.time() - before
recognized = dataset.decode(outputs[0])
recognized_text = dataset.pretty_print(outputs[0], example)
if recognized:
# Theano scan doesn't work with 0 length sequences
costs_recognized, weights_recognized = recognizer.analyze(
inputs=required_inputs,
groundtruth=raw_groundtruth,
prediction=outputs[0])[:2]
weight_std_recognized, mono_penalty_recognized = weight_statistics(
weights_recognized)
error = min(1, wer(groundtruth, recognized))
else:
error = 1
total_errors += len(groundtruth) * error
total_length += len(groundtruth)
if config.get('vocabulary'):
wer_error = min(
1, wer(to_words(groundtruth_text), to_words(recognized_text)))
total_wer_errors += len(groundtruth) * wer_error
total_word_length += len(groundtruth)
if report and recognized:
show_alignment(weights_groundtruth, groundtruth, bos_symbol=True)
pyplot.savefig(
os.path.join(alignments_path,
"{}.groundtruth.png".format(number)))
show_alignment(weights_recognized, recognized, bos_symbol=True)
pyplot.savefig(
os.path.join(alignments_path,
"{}.recognized.png".format(number)))
if decoded_file is not None:
print("{} {}".format(uttids, ' '.join(recognized)),
file=decoded_file)
print("Decoding took:", took, file=print_to)
print("Beam search cost:", search_costs[0], file=print_to)
print("Recognized:", recognized_text, file=print_to)
if recognized:
print("Recognized cost:", costs_recognized.sum(), file=print_to)
print("Recognized weight std:",
weight_std_recognized,
file=print_to)
print("Recognized monotonicity penalty:",
mono_penalty_recognized,
file=print_to)
print("CER:", error, file=print_to)
print("Average CER:", total_errors / total_length, file=print_to)
if config.get('vocabulary'):
print("WER:", wer_error, file=print_to)
print("Average WER:",
total_wer_errors / total_word_length,
file=print_to)
print_to.flush()
def initialize_all(config, save_path, bokeh_name, params, bokeh_server, bokeh,
test_tag, use_load_ext, load_log, fast_start):
root_path, extension = os.path.splitext(save_path)
data = Data(**config['data'])
train_conf = config['training']
recognizer = create_model(config, data, test_tag)
# Separate attention_params to be handled differently
# when regularization is applied
attention = recognizer.generator.transition.attention
attention_params = Selector(attention).get_parameters().values()
logger.info(
"Initialization schemes for all bricks.\n"
"Works well only in my branch with __repr__ added to all them,\n"
"there is an issue #463 in Blocks to do that properly.")
def show_init_scheme(cur):
result = dict()
for attr in dir(cur):
if attr.endswith('_init'):
result[attr] = getattr(cur, attr)
for child in cur.children:
result[child.name] = show_init_scheme(child)
return result
logger.info(pprint.pformat(show_init_scheme(recognizer)))
prediction, prediction_mask = add_exploration(recognizer, data, train_conf)
#
# Observables:
#
primary_observables = [] # monitored each batch
secondary_observables = [] # monitored every 10 batches
validation_observables = [] # monitored on the validation set
cg = recognizer.get_cost_graph(batch=True,
prediction=prediction,
prediction_mask=prediction_mask)
labels, = VariableFilter(applications=[recognizer.cost], name='labels')(cg)
labels_mask, = VariableFilter(applications=[recognizer.cost],
name='labels_mask')(cg)
gain_matrix = VariableFilter(
theano_name=RewardRegressionEmitter.GAIN_MATRIX)(cg)
if len(gain_matrix):
gain_matrix, = gain_matrix
primary_observables.append(rename(gain_matrix.min(), 'min_gain'))
primary_observables.append(rename(gain_matrix.max(), 'max_gain'))
batch_cost = cg.outputs[0].sum()
batch_size = rename(recognizer.labels.shape[1], "batch_size")
# Assumes constant batch size. `aggregation.mean` is not used because
# of Blocks #514.
cost = batch_cost / batch_size
cost.name = "sequence_total_cost"
logger.info("Cost graph is built")
# Fetch variables useful for debugging.
# It is important not to use any aggregation schemes here,
# as it's currently impossible to spread the effect of
# regularization on their variables, see Blocks #514.
cost_cg = ComputationGraph(cost)
r = recognizer
energies, = VariableFilter(applications=[r.generator.readout.readout],
name="output_0")(cost_cg)
bottom_output = VariableFilter(
# We need name_regex instead of name because LookupTable calls itsoutput output_0
applications=[r.bottom.apply],
name_regex="output")(cost_cg)[-1]
attended, = VariableFilter(applications=[r.generator.transition.apply],
name="attended")(cost_cg)
attended_mask, = VariableFilter(applications=[
r.generator.transition.apply
],
name="attended_mask")(cost_cg)
weights, = VariableFilter(applications=[r.generator.evaluate],
name="weights")(cost_cg)
from blocks.roles import AUXILIARY
l2_cost, = VariableFilter(roles=[AUXILIARY],
theano_name='l2_cost_aux')(cost_cg)
cost_forward, = VariableFilter(roles=[AUXILIARY],
theano_name='costs_forward_aux')(cost_cg)
max_recording_length = rename(bottom_output.shape[0],
"max_recording_length")
# To exclude subsampling related bugs
max_attended_mask_length = rename(attended_mask.shape[0],
"max_attended_mask_length")
max_attended_length = rename(attended.shape[0], "max_attended_length")
max_num_phonemes = rename(labels.shape[0], "max_num_phonemes")
min_energy = rename(energies.min(), "min_energy")
max_energy = rename(energies.max(), "max_energy")
mean_attended = rename(abs(attended).mean(), "mean_attended")
mean_bottom_output = rename(
abs(bottom_output).mean(), "mean_bottom_output")
weights_penalty = rename(monotonicity_penalty(weights, labels_mask),
"weights_penalty")
weights_entropy = rename(entropy(weights, labels_mask), "weights_entropy")
mask_density = rename(labels_mask.mean(), "mask_density")
cg = ComputationGraph([
cost, weights_penalty, weights_entropy, min_energy, max_energy,
mean_attended, mean_bottom_output, batch_size, max_num_phonemes,
mask_density
])
# Regularization. It is applied explicitly to all variables
# of interest, it could not be applied to the cost only as it
# would not have effect on auxiliary variables, see Blocks #514.
reg_config = config.get('regularization', dict())
regularized_cg = cg
if reg_config.get('dropout'):
logger.info('apply dropout')
regularized_cg = apply_dropout(cg, [bottom_output], 0.5)
if reg_config.get('noise'):
logger.info('apply noise')
noise_subjects = [
p for p in cg.parameters if p not in attention_params
]
regularized_cg = apply_noise(cg, noise_subjects, reg_config['noise'])
train_cost = regularized_cg.outputs[0]
if reg_config.get("penalty_coof", .0) > 0:
# big warning!!!
# here we assume that:
# regularized_weights_penalty = regularized_cg.outputs[1]
train_cost = (train_cost + reg_config.get("penalty_coof", .0) *
regularized_cg.outputs[1] / batch_size)
if reg_config.get("decay", .0) > 0:
train_cost = (
train_cost + reg_config.get("decay", .0) *
l2_norm(VariableFilter(roles=[WEIGHT])(cg.parameters))**2)
train_cost = rename(train_cost, 'train_cost')
gradients = None
if reg_config.get('adaptive_noise'):
logger.info('apply adaptive noise')
if ((reg_config.get("penalty_coof", .0) > 0)
or (reg_config.get("decay", .0) > 0)):
logger.error('using adaptive noise with alignment weight panalty '
'or weight decay is probably stupid')
train_cost, regularized_cg, gradients, noise_brick = apply_adaptive_noise(
cg,
cg.outputs[0],
variables=cg.parameters,
num_examples=data.get_dataset('train').num_examples,
parameters=Model(
regularized_cg.outputs[0]).get_parameter_dict().values(),
**reg_config.get('adaptive_noise'))
train_cost.name = 'train_cost'
adapt_noise_cg = ComputationGraph(train_cost)
model_prior_mean = rename(
VariableFilter(applications=[noise_brick.apply],
name='model_prior_mean')(adapt_noise_cg)[0],
'model_prior_mean')
model_cost = rename(
VariableFilter(applications=[noise_brick.apply],
name='model_cost')(adapt_noise_cg)[0], 'model_cost')
model_prior_variance = rename(
VariableFilter(applications=[noise_brick.apply],
name='model_prior_variance')(adapt_noise_cg)[0],
'model_prior_variance')
regularized_cg = ComputationGraph(
[train_cost, model_cost] + regularized_cg.outputs +
[model_prior_mean, model_prior_variance])
primary_observables += [
regularized_cg.outputs[1], # model cost
regularized_cg.outputs[2], # task cost
regularized_cg.outputs[-2], # model prior mean
regularized_cg.outputs[-1]
] # model prior variance
model = Model(train_cost)
if params:
logger.info("Load parameters from " + params)
# please note: we cannot use recognizer.load_params
# as it builds a new computation graph that dies not have
# shapred variables added by adaptive weight noise
with open(params, 'r') as src:
param_values = load_parameters(src)
model.set_parameter_values(param_values)
parameters = model.get_parameter_dict()
logger.info("Parameters:\n" +
pprint.pformat([(key, parameters[key].get_value().shape)
for key in sorted(parameters.keys())],
width=120))
# Define the training algorithm.
clipping = StepClipping(train_conf['gradient_threshold'])
clipping.threshold.name = "gradient_norm_threshold"
rule_names = train_conf.get('rules', ['momentum'])
core_rules = []
if 'momentum' in rule_names:
logger.info("Using scaling and momentum for training")
core_rules.append(Momentum(train_conf['scale'],
train_conf['momentum']))
if 'adadelta' in rule_names:
logger.info("Using AdaDelta for training")
core_rules.append(
AdaDelta(train_conf['decay_rate'], train_conf['epsilon']))
max_norm_rules = []
if reg_config.get('max_norm', False) > 0:
logger.info("Apply MaxNorm")
maxnorm_subjects = VariableFilter(roles=[WEIGHT])(cg.parameters)
if reg_config.get('max_norm_exclude_lookup', False):
maxnorm_subjects = [
v for v in maxnorm_subjects
if not isinstance(get_brick(v), LookupTable)
]
logger.info("Parameters covered by MaxNorm:\n" + pprint.pformat(
[name for name, p in parameters.items() if p in maxnorm_subjects]))
logger.info("Parameters NOT covered by MaxNorm:\n" + pprint.pformat([
name for name, p in parameters.items() if not p in maxnorm_subjects
]))
max_norm_rules = [
Restrict(VariableClipping(reg_config['max_norm'], axis=0),
maxnorm_subjects)
]
burn_in = []
if train_conf.get('burn_in_steps', 0):
burn_in.append(BurnIn(num_steps=train_conf['burn_in_steps']))
algorithm = GradientDescent(
cost=train_cost,
parameters=parameters.values(),
gradients=gradients,
step_rule=CompositeRule(
[clipping] + core_rules + max_norm_rules +
# Parameters are not changed at all
# when nans are encountered.
[RemoveNotFinite(0.0)] + burn_in),
on_unused_sources='warn')
logger.debug("Scan Ops in the gradients")
gradient_cg = ComputationGraph(algorithm.gradients.values())
for op in ComputationGraph(gradient_cg).scans:
logger.debug(op)
# More variables for debugging: some of them can be added only
# after the `algorithm` object is created.
secondary_observables += list(regularized_cg.outputs)
if not 'train_cost' in [v.name for v in secondary_observables]:
secondary_observables += [train_cost]
secondary_observables += [
algorithm.total_step_norm, algorithm.total_gradient_norm,
clipping.threshold
]
for name, param in parameters.items():
num_elements = numpy.product(param.get_value().shape)
norm = param.norm(2) / num_elements**0.5
grad_norm = algorithm.gradients[param].norm(2) / num_elements**0.5
step_norm = algorithm.steps[param].norm(2) / num_elements**0.5
stats = tensor.stack(norm, grad_norm, step_norm, step_norm / grad_norm)
stats.name = name + '_stats'
secondary_observables.append(stats)
primary_observables += [
train_cost, algorithm.total_gradient_norm, algorithm.total_step_norm,
clipping.threshold, max_recording_length, max_attended_length,
max_attended_mask_length
]
validation_observables += [
rename(aggregation.mean(batch_cost, batch_size), cost.name),
rename(aggregation.sum_(batch_size), 'num_utterances'),
weights_entropy, weights_penalty
]
def attach_aggregation_schemes(variables):
# Aggregation specification has to be factored out as a separate
# function as it has to be applied at the very last stage
# separately to training and validation observables.
result = []
for var in variables:
if var.name == 'weights_penalty':
result.append(
rename(aggregation.mean(var, batch_size),
'weights_penalty_per_recording'))
elif var.name == 'weights_entropy':
result.append(
rename(aggregation.mean(var, labels_mask.sum()),
'weights_entropy_per_label'))
else:
result.append(var)
return result
mon_conf = config['monitoring']
# Build main loop.
logger.info("Initialize extensions")
extensions = []
if use_load_ext and params:
extensions.append(
Load(params, load_iteration_state=True, load_log=True))
if load_log and params:
extensions.append(LoadLog(params))
extensions += [
Timing(after_batch=True),
CGStatistics(),
#CodeVersion(['lvsr']),
]
extensions.append(
TrainingDataMonitoring(primary_observables + [l2_cost, cost_forward],
after_batch=True))
average_monitoring = TrainingDataMonitoring(
attach_aggregation_schemes(secondary_observables),
prefix="average",
every_n_batches=10)
extensions.append(average_monitoring)
validation = DataStreamMonitoring(
attach_aggregation_schemes(validation_observables +
[l2_cost, cost_forward]),
data.get_stream("valid", shuffle=False),
prefix="valid").set_conditions(
before_first_epoch=not fast_start,
every_n_epochs=mon_conf['validate_every_epochs'],
every_n_batches=mon_conf['validate_every_batches'],
after_training=False)
extensions.append(validation)
per = PhonemeErrorRate(recognizer, data, **config['monitoring']['search'])
per_monitoring = DataStreamMonitoring(
[per],
data.get_stream("valid", batches=False, shuffle=False),
prefix="valid").set_conditions(
before_first_epoch=not fast_start,
every_n_epochs=mon_conf['search_every_epochs'],
every_n_batches=mon_conf['search_every_batches'],
after_training=False)
extensions.append(per_monitoring)
track_the_best_per = TrackTheBest(
per_monitoring.record_name(per)).set_conditions(
before_first_epoch=True, after_epoch=True)
track_the_best_cost = TrackTheBest(
validation.record_name(cost)).set_conditions(before_first_epoch=True,
after_epoch=True)
extensions += [track_the_best_cost, track_the_best_per]
extensions.append(
AdaptiveClipping(algorithm.total_gradient_norm.name,
clipping,
train_conf['gradient_threshold'],
decay_rate=0.998,
burnin_period=500))
extensions += [
SwitchOffLengthFilter(
data.length_filter,
after_n_batches=train_conf.get('stop_filtering')),
FinishAfter(after_n_batches=train_conf.get('num_batches'),
after_n_epochs=train_conf.get('num_epochs')).add_condition(
["after_batch"], _gradient_norm_is_none),
]
channels = [
# Plot 1: training and validation costs
[
average_monitoring.record_name(train_cost),
validation.record_name(cost)
],
# Plot 2: gradient norm,
[
average_monitoring.record_name(algorithm.total_gradient_norm),
average_monitoring.record_name(clipping.threshold)
],
# Plot 3: phoneme error rate
[per_monitoring.record_name(per)],
# Plot 4: training and validation mean weight entropy
[
average_monitoring._record_name('weights_entropy_per_label'),
validation._record_name('weights_entropy_per_label')
],
# Plot 5: training and validation monotonicity penalty
[
average_monitoring._record_name('weights_penalty_per_recording'),
validation._record_name('weights_penalty_per_recording')
]
]
if bokeh:
extensions += [
Plot(bokeh_name if bokeh_name else os.path.basename(save_path),
channels,
every_n_batches=10,
server_url=bokeh_server),
]
extensions += [
Checkpoint(save_path,
before_first_epoch=not fast_start,
after_epoch=True,
every_n_batches=train_conf.get('save_every_n_batches'),
save_separately=["model", "log"],
use_cpickle=True).add_condition(
['after_epoch'],
OnLogRecord(track_the_best_per.notification_name),
(root_path + "_best" + extension, )).add_condition(
['after_epoch'],
OnLogRecord(track_the_best_cost.notification_name),
(root_path + "_best_ll" + extension, )),
ProgressBar()
]
extensions.append(EmbedIPython(use_main_loop_run_caller_env=True))
if config['net']['criterion']['name'].startswith('mse'):
extensions.append(
LogInputsGains(labels, cg, recognizer.generator.readout.emitter,
data))
if train_conf.get('patience'):
patience_conf = train_conf['patience']
if not patience_conf.get('notification_names'):
# setdefault will not work for empty list
patience_conf['notification_names'] = [
track_the_best_per.notification_name,
track_the_best_cost.notification_name
]
extensions.append(Patience(**patience_conf))
extensions.append(
Printing(every_n_batches=1, attribute_filter=PrintingFilterList()))
return model, algorithm, data, extensions
def show_data(config):
data = Data(**config['data'])
stream = data.get_stream("train")
data = next(stream.get_epoch_iterator(as_dict=True))
import IPython; IPython.embed()
def search(config, params, load_path, beam_size, part, decode_only, report,
decoded_save, nll_only, char_discount):
from matplotlib import pyplot
from lvsr.notebook import show_alignment
data = Data(**config['data'])
recognizer = SpeechRecognizer(
data.recordings_source, data.labels_source,
data.eos_label, data.num_features, data.num_labels,
character_map=data.character_map,
name='recognizer', **config["net"])
recognizer.load_params(load_path)
recognizer.init_beam_search(beam_size)
dataset = data.get_dataset(part, add_sources=(data.uttid_source,))
stream = data.get_stream(part, batches=False, shuffle=False,
add_sources=(data.uttid_source,))
it = stream.get_epoch_iterator()
if decode_only is not None:
decode_only = eval(decode_only)
weights = tensor.matrix('weights')
weight_statistics = theano.function(
[weights],
[weights_std(weights.dimshuffle(0, 'x', 1)),
monotonicity_penalty(weights.dimshuffle(0, 'x', 1))])
print_to = sys.stdout
if report:
alignments_path = os.path.join(report, "alignments")
if not os.path.exists(report):
os.mkdir(report)
os.mkdir(alignments_path)
print_to = open(os.path.join(report, "report.txt"), 'w')
decoded_file = None
if decoded_save:
decoded_file = open(decoded_save, 'w')
num_examples = .0
total_nll = .0
total_errors = .0
total_length = .0
total_wer_errors = .0
total_word_length = 0.
with open(os.path.expandvars(config['vocabulary'])) as f:
vocabulary = dict(line.split() for line in f.readlines())
def to_words(chars):
words = chars.split()
words = [vocabulary[word] if word in vocabulary
else vocabulary['<UNK>'] for word in words]
return words
for number, data in enumerate(it):
if decode_only and number not in decode_only:
continue
print("Utterance {} ({})".format(number, data[2]), file=print_to)
groundtruth = dataset.decode(data[1])
groundtruth_text = dataset.pretty_print(data[1])
costs_groundtruth, weights_groundtruth = (
recognizer.analyze(data[0], data[1])[:2])
weight_std_groundtruth, mono_penalty_groundtruth = weight_statistics(
weights_groundtruth)
total_nll += costs_groundtruth.sum()
num_examples += 1
print("Groundtruth:", groundtruth_text, file=print_to)
print("Groundtruth cost:", costs_groundtruth.sum(), file=print_to)
print("Groundtruth weight std:", weight_std_groundtruth, file=print_to)
print("Groundtruth monotonicity penalty:", mono_penalty_groundtruth, file=print_to)
print("Average groundtruth cost: {}".format(total_nll / num_examples),
file=print_to)
if nll_only:
continue
before = time.time()
outputs, search_costs = recognizer.beam_search(
data[0], char_discount=char_discount)
took = time.time() - before
recognized = dataset.decode(outputs[0])
recognized_text = dataset.pretty_print(outputs[0])
costs_recognized, weights_recognized = (
recognizer.analyze(data[0], outputs[0])[:2])
weight_std_recognized, mono_penalty_recognized = weight_statistics(
weights_recognized)
error = min(1, wer(groundtruth, recognized))
total_errors += len(groundtruth) * error
total_length += len(groundtruth)
wer_error = min(1, wer(to_words(groundtruth_text),
to_words(recognized_text)))
total_wer_errors += len(groundtruth) * wer_error
total_word_length += len(groundtruth)
if report and recognized:
show_alignment(weights_groundtruth, groundtruth, bos_symbol=True)
pyplot.savefig(os.path.join(
alignments_path, "{}.groundtruth.png".format(number)))
show_alignment(weights_recognized, recognized, bos_symbol=True)
pyplot.savefig(os.path.join(
alignments_path, "{}.recognized.png".format(number)))
if decoded_file is not None:
print("{} {}".format(data[2], ' '.join(recognized)), file=decoded_file)
print("Decoding took:", took, file=print_to)
print("Beam search cost:", search_costs[0], file=print_to)
print("Recognized:", recognized_text, file=print_to)
print("Recognized cost:", costs_recognized.sum(), file=print_to)
print("Recognized weight std:", weight_std_recognized, file=print_to)
print("Recognized monotonicity penalty:", mono_penalty_recognized, file=print_to)
print("CER:", error, file=print_to)
print("Average CER:", total_errors / total_length, file=print_to)
print("WER:", wer_error, file=print_to)
print("Average WER:", total_wer_errors / total_word_length, file=print_to)
def train(config, save_path, bokeh_name,
params, bokeh_server, test_tag, use_load_ext,
load_log, fast_start, validation_epochs, validation_batches,
per_epochs, per_batches):
root_path, extension = os.path.splitext(save_path)
data = Data(**config['data'])
# Build the main brick and initialize all parameters.
recognizer = SpeechRecognizer(
data.recordings_source, data.labels_source,
data.eos_label,
data.num_features, data.num_labels,
name="recognizer",
data_prepend_eos=data.prepend_eos,
character_map=data.character_map,
**config["net"])
for brick_path, attribute_dict in sorted(
config['initialization'].items(),
key=lambda (k, v): -k.count('/')):
for attribute, value in attribute_dict.items():
brick, = Selector(recognizer).select(brick_path).bricks
setattr(brick, attribute, value)
brick.push_initialization_config()
recognizer.initialize()
# Separate attention_params to be handled differently
# when regularization is applied
attention = recognizer.generator.transition.attention
attention_params = Selector(attention).get_parameters().values()
logger.info(
"Initialization schemes for all bricks.\n"
"Works well only in my branch with __repr__ added to all them,\n"
"there is an issue #463 in Blocks to do that properly.")
def show_init_scheme(cur):
result = dict()
for attr in dir(cur):
if attr.endswith('_init'):
result[attr] = getattr(cur, attr)
for child in cur.children:
result[child.name] = show_init_scheme(child)
return result
logger.info(pprint.pformat(show_init_scheme(recognizer)))
if params:
logger.info("Load parameters from " + params)
recognizer.load_params(params)
if test_tag:
tensor.TensorVariable.__str__ = tensor.TensorVariable.__repr__
__stream = data.get_stream("train")
__data = next(__stream.get_epoch_iterator(as_dict=True))
recognizer.recordings.tag.test_value = __data[data.recordings_source]
recognizer.recordings_mask.tag.test_value = __data[data.recordings_source + '_mask']
recognizer.labels.tag.test_value = __data[data.labels_source]
recognizer.labels_mask.tag.test_value = __data[data.labels_source + '_mask']
theano.config.compute_test_value = 'warn'
batch_cost = recognizer.get_cost_graph().sum()
batch_size = named_copy(recognizer.recordings.shape[1], "batch_size")
# Assumes constant batch size. `aggregation.mean` is not used because
# of Blocks #514.
cost = batch_cost / batch_size
cost.name = "sequence_log_likelihood"
logger.info("Cost graph is built")
# Fetch variables useful for debugging.
# It is important not to use any aggregation schemes here,
# as it's currently impossible to spread the effect of
# regularization on their variables, see Blocks #514.
cost_cg = ComputationGraph(cost)
r = recognizer
energies, = VariableFilter(
applications=[r.generator.readout.readout], name="output_0")(
cost_cg)
bottom_output, = VariableFilter(
applications=[r.bottom.apply], name="output")(
cost_cg)
attended, = VariableFilter(
applications=[r.generator.transition.apply], name="attended")(
cost_cg)
attended_mask, = VariableFilter(
applications=[r.generator.transition.apply], name="attended_mask")(
cost_cg)
weights, = VariableFilter(
applications=[r.generator.evaluate], name="weights")(
cost_cg)
max_recording_length = named_copy(r.recordings.shape[0],
"max_recording_length")
# To exclude subsampling related bugs
max_attended_mask_length = named_copy(attended_mask.shape[0],
"max_attended_mask_length")
max_attended_length = named_copy(attended.shape[0],
"max_attended_length")
max_num_phonemes = named_copy(r.labels.shape[0],
"max_num_phonemes")
min_energy = named_copy(energies.min(), "min_energy")
max_energy = named_copy(energies.max(), "max_energy")
mean_attended = named_copy(abs(attended).mean(),
"mean_attended")
mean_bottom_output = named_copy(abs(bottom_output).mean(),
"mean_bottom_output")
weights_penalty = named_copy(monotonicity_penalty(weights, r.labels_mask),
"weights_penalty")
weights_entropy = named_copy(entropy(weights, r.labels_mask),
"weights_entropy")
mask_density = named_copy(r.labels_mask.mean(),
"mask_density")
cg = ComputationGraph([
cost, weights_penalty, weights_entropy,
min_energy, max_energy,
mean_attended, mean_bottom_output,
batch_size, max_num_phonemes,
mask_density])
# Regularization. It is applied explicitly to all variables
# of interest, it could not be applied to the cost only as it
# would not have effect on auxiliary variables, see Blocks #514.
reg_config = config['regularization']
regularized_cg = cg
if reg_config.get('dropout'):
logger.info('apply dropout')
regularized_cg = apply_dropout(cg, [bottom_output], 0.5)
if reg_config.get('noise'):
logger.info('apply noise')
noise_subjects = [p for p in cg.parameters if p not in attention_params]
regularized_cg = apply_noise(cg, noise_subjects, reg_config['noise'])
regularized_cost = regularized_cg.outputs[0]
regularized_weights_penalty = regularized_cg.outputs[1]
# Model is weird class, we spend lots of time arguing with Bart
# what it should be. However it can already nice things, e.g.
# one extract all the parameters from the computation graphs
# and give them hierahical names. This help to notice when a
# because of some bug a parameter is not in the computation
# graph.
model = SpeechModel(regularized_cost)
params = model.get_parameter_dict()
logger.info("Parameters:\n" +
pprint.pformat(
[(key, params[key].get_value().shape) for key
in sorted(params.keys())],
width=120))
# Define the training algorithm.
train_conf = config['training']
clipping = StepClipping(train_conf['gradient_threshold'])
clipping.threshold.name = "gradient_norm_threshold"
rule_names = train_conf.get('rules', ['momentum'])
core_rules = []
if 'momentum' in rule_names:
logger.info("Using scaling and momentum for training")
core_rules.append(Momentum(train_conf['scale'], train_conf['momentum']))
if 'adadelta' in rule_names:
logger.info("Using AdaDelta for training")
core_rules.append(AdaDelta(train_conf['decay_rate'], train_conf['epsilon']))
max_norm_rules = []
if reg_config.get('max_norm', False):
logger.info("Apply MaxNorm")
maxnorm_subjects = VariableFilter(roles=[WEIGHT])(cg.parameters)
if reg_config.get('max_norm_exclude_lookup', False):
maxnorm_subjects = [v for v in maxnorm_subjects
if not isinstance(get_brick(v), LookupTable)]
logger.info("Parameters covered by MaxNorm:\n"
+ pprint.pformat([name for name, p in params.items()
if p in maxnorm_subjects]))
logger.info("Parameters NOT covered by MaxNorm:\n"
+ pprint.pformat([name for name, p in params.items()
if not p in maxnorm_subjects]))
max_norm_rules = [
Restrict(VariableClipping(reg_config['max_norm'], axis=0),
maxnorm_subjects)]
algorithm = GradientDescent(
cost=regularized_cost +
reg_config.get("penalty_coof", .0) * regularized_weights_penalty / batch_size +
reg_config.get("decay", .0) *
l2_norm(VariableFilter(roles=[WEIGHT])(cg.parameters)) ** 2,
parameters=params.values(),
step_rule=CompositeRule(
[clipping] + core_rules + max_norm_rules +
# Parameters are not changed at all
# when nans are encountered.
[RemoveNotFinite(0.0)]))
# More variables for debugging: some of them can be added only
# after the `algorithm` object is created.
observables = regularized_cg.outputs
observables += [
algorithm.total_step_norm, algorithm.total_gradient_norm,
clipping.threshold]
for name, param in params.items():
num_elements = numpy.product(param.get_value().shape)
norm = param.norm(2) / num_elements ** 0.5
grad_norm = algorithm.gradients[param].norm(2) / num_elements ** 0.5
step_norm = algorithm.steps[param].norm(2) / num_elements ** 0.5
stats = tensor.stack(norm, grad_norm, step_norm, step_norm / grad_norm)
stats.name = name + '_stats'
observables.append(stats)
def attach_aggregation_schemes(variables):
# Aggregation specification has to be factored out as a separate
# function as it has to be applied at the very last stage
# separately to training and validation observables.
result = []
for var in variables:
if var.name == 'weights_penalty':
result.append(named_copy(aggregation.mean(var, batch_size),
'weights_penalty_per_recording'))
elif var.name == 'weights_entropy':
result.append(named_copy(aggregation.mean(
var, recognizer.labels_mask.sum()), 'weights_entropy_per_label'))
else:
result.append(var)
return result
# Build main loop.
logger.info("Initialize extensions")
extensions = []
if use_load_ext and params:
extensions.append(Load(params, load_iteration_state=True, load_log=True))
if load_log and params:
extensions.append(LoadLog(params))
extensions += [
Timing(after_batch=True),
CGStatistics(),
#CodeVersion(['lvsr']),
]
extensions.append(TrainingDataMonitoring(
[observables[0], algorithm.total_gradient_norm,
algorithm.total_step_norm, clipping.threshold,
max_recording_length,
max_attended_length, max_attended_mask_length], after_batch=True))
average_monitoring = TrainingDataMonitoring(
attach_aggregation_schemes(observables),
prefix="average", every_n_batches=10)
extensions.append(average_monitoring)
validation = DataStreamMonitoring(
attach_aggregation_schemes([cost, weights_entropy, weights_penalty]),
data.get_stream("valid"), prefix="valid").set_conditions(
before_first_epoch=not fast_start,
every_n_epochs=validation_epochs,
every_n_batches=validation_batches,
after_training=False)
extensions.append(validation)
recognizer.init_beam_search(10)
per = PhonemeErrorRate(recognizer, data.get_dataset("valid"))
per_monitoring = DataStreamMonitoring(
[per], data.get_stream("valid", batches=False, shuffle=False),
prefix="valid").set_conditions(
before_first_epoch=not fast_start,
every_n_epochs=per_epochs,
every_n_batches=per_batches,
after_training=False)
extensions.append(per_monitoring)
track_the_best_per = TrackTheBest(
per_monitoring.record_name(per)).set_conditions(
before_first_epoch=True, after_epoch=True)
track_the_best_likelihood = TrackTheBest(
validation.record_name(cost)).set_conditions(
before_first_epoch=True, after_epoch=True)
extensions += [track_the_best_likelihood, track_the_best_per]
extensions.append(AdaptiveClipping(
algorithm.total_gradient_norm.name,
clipping, train_conf['gradient_threshold'],
decay_rate=0.998, burnin_period=500))
extensions += [
SwitchOffLengthFilter(data.length_filter,
after_n_batches=train_conf.get('stop_filtering')),
FinishAfter(after_n_batches=train_conf['num_batches'],
after_n_epochs=train_conf['num_epochs'])
.add_condition(["after_batch"], _gradient_norm_is_none),
# Live plotting: requires launching `bokeh-server`
# and allows to see what happens online.
Plot(bokeh_name
if bokeh_name
else os.path.basename(save_path),
[# Plot 1: training and validation costs
[average_monitoring.record_name(regularized_cost),
validation.record_name(cost)],
# Plot 2: gradient norm,
[average_monitoring.record_name(algorithm.total_gradient_norm),
average_monitoring.record_name(clipping.threshold)],
# Plot 3: phoneme error rate
[per_monitoring.record_name(per)],
# Plot 4: training and validation mean weight entropy
[average_monitoring._record_name('weights_entropy_per_label'),
validation._record_name('weights_entropy_per_label')],
# Plot 5: training and validation monotonicity penalty
[average_monitoring._record_name('weights_penalty_per_recording'),
validation._record_name('weights_penalty_per_recording')]],
every_n_batches=10,
server_url=bokeh_server),
Checkpoint(save_path,
before_first_epoch=not fast_start, after_epoch=True,
every_n_batches=train_conf.get('save_every_n_batches'),
save_separately=["model", "log"],
use_cpickle=True)
.add_condition(
['after_epoch'],
OnLogRecord(track_the_best_per.notification_name),
(root_path + "_best" + extension,))
.add_condition(
['after_epoch'],
OnLogRecord(track_the_best_likelihood.notification_name),
(root_path + "_best_ll" + extension,)),
ProgressBar(),
Printing(every_n_batches=1,
attribute_filter=PrintingFilterList()
)]
# Save the config into the status
log = TrainingLog()
log.status['_config'] = repr(config)
main_loop = MainLoop(
model=model, log=log, algorithm=algorithm,
data_stream=data.get_stream("train"),
extensions=extensions)
main_loop.run()
def search(config, params, load_path, part, decode_only, report, decoded_save,
nll_only, seed):
import matplotlib
matplotlib.use("Agg")
from matplotlib import pyplot
from lvsr.notebook import show_alignment
data = Data(**config['data'])
search_conf = config['monitoring']['search']
logger.info("Recognizer initialization started")
recognizer = SpeechRecognizer(data.recordings_source,
data.labels_source,
data.eos_label,
data.num_features,
data.num_labels,
character_map=data.character_map,
name='recognizer',
**config["net"])
recognizer.load_params(load_path)
recognizer.init_beam_search(search_conf['beam_size'])
logger.info("Recognizer is initialized")
stream = data.get_stream(part,
batches=False,
shuffle=part == 'train',
add_sources=(data.uttid_source, ),
num_examples=500 if part == 'train' else None,
seed=seed)
it = stream.get_epoch_iterator()
if decode_only is not None:
decode_only = eval(decode_only)
weights = tensor.matrix('weights')
weight_statistics = theano.function([weights], [
weights_std(weights.dimshuffle(0, 'x', 1)),
monotonicity_penalty(weights.dimshuffle(0, 'x', 1))
])
print_to = sys.stdout
if report:
alignments_path = os.path.join(report, "alignments")
if not os.path.exists(report):
os.mkdir(report)
os.mkdir(alignments_path)
print_to = open(os.path.join(report, "report.txt"), 'w')
decoded_file = None
if decoded_save:
decoded_file = open(decoded_save, 'w')
num_examples = .0
total_nll = .0
total_errors = .0
total_length = .0
total_wer_errors = .0
total_word_length = 0.
if config.get('vocabulary'):
with open(os.path.expandvars(config['vocabulary'])) as f:
vocabulary = dict(line.split() for line in f.readlines())
def to_words(chars):
words = chars.split()
words = [
vocabulary[word] if word in vocabulary else vocabulary['<UNK>']
for word in words
]
return words
for number, example in enumerate(it):
if decode_only and number not in decode_only:
continue
print("Utterance {} ({})".format(number, example[2]), file=print_to)
groundtruth = data.decode(example[1])
groundtruth_text = data.pretty_print(example[1])
costs_groundtruth, weights_groundtruth = (recognizer.analyze(
example[0], example[1], example[1])[:2])
weight_std_groundtruth, mono_penalty_groundtruth = weight_statistics(
weights_groundtruth)
total_nll += costs_groundtruth.sum()
num_examples += 1
print("Groundtruth:", groundtruth_text, file=print_to)
print("Groundtruth cost:", costs_groundtruth.sum(), file=print_to)
print("Groundtruth weight std:", weight_std_groundtruth, file=print_to)
print("Groundtruth monotonicity penalty:",
mono_penalty_groundtruth,
file=print_to)
print("Average groundtruth cost: {}".format(total_nll / num_examples),
file=print_to)
if nll_only:
print_to.flush()
continue
before = time.time()
outputs, search_costs = recognizer.beam_search(
example[0],
char_discount=search_conf['char_discount'],
round_to_inf=search_conf['round_to_inf'],
stop_on=search_conf['stop_on'])
took = time.time() - before
recognized = data.decode(outputs[0])
recognized_text = data.pretty_print(outputs[0])
if recognized:
# Theano scan doesn't work with 0 length sequences
costs_recognized, weights_recognized = (recognizer.analyze(
example[0], example[1], outputs[0])[:2])
weight_std_recognized, mono_penalty_recognized = weight_statistics(
weights_recognized)
error = min(1, wer(groundtruth, recognized))
else:
error = 1
total_errors += len(groundtruth) * error
total_length += len(groundtruth)
if config.get('vocabulary'):
wer_error = min(
1, wer(to_words(groundtruth_text), to_words(recognized_text)))
total_wer_errors += len(groundtruth) * wer_error
total_word_length += len(groundtruth)
if report and recognized:
show_alignment(weights_groundtruth, groundtruth, bos_symbol=True)
pyplot.savefig(
os.path.join(alignments_path,
"{}.groundtruth.png".format(number)))
show_alignment(weights_recognized, recognized, bos_symbol=True)
pyplot.savefig(
os.path.join(alignments_path,
"{}.recognized.png".format(number)))
if decoded_file is not None:
print("{} {}".format(example[2], ' '.join(recognized)),
file=decoded_file)
print("Decoding took:", took, file=print_to)
print("Beam search cost:", search_costs[0], file=print_to)
print("Recognized:", recognized_text, file=print_to)
if recognized:
print("Recognized cost:", costs_recognized.sum(), file=print_to)
print("Recognized weight std:",
weight_std_recognized,
file=print_to)
print("Recognized monotonicity penalty:",
mono_penalty_recognized,
file=print_to)
print("CER:", error, file=print_to)
print("Average CER:", total_errors / total_length, file=print_to)
if config.get('vocabulary'):
print("WER:", wer_error, file=print_to)
print("Average WER:",
total_wer_errors / total_word_length,
file=print_to)
print_to.flush()
def search(config, params, load_path, part, decode_only, report,
decoded_save, nll_only, seed):
import matplotlib
matplotlib.use("Agg")
from matplotlib import pyplot
from lvsr.notebook import show_alignment
data = Data(**config['data'])
search_conf = config['monitoring']['search']
logger.info("Recognizer initialization started")
recognizer = create_model(config, data, load_path)
recognizer.init_beam_search(search_conf['beam_size'])
logger.info("Recognizer is initialized")
has_uttids = 'uttids' in data.info_dataset.provides_sources
add_sources = ('uttids',) if has_uttids else ()
dataset = data.get_dataset(part, add_sources)
stream = data.get_stream(part, batches=False,
shuffle=part == 'train',
add_sources=add_sources,
num_examples=500 if part == 'train' else None,
seed=seed)
it = stream.get_epoch_iterator(as_dict=True)
if decode_only is not None:
decode_only = eval(decode_only)
weights = tensor.matrix('weights')
weight_statistics = theano.function(
[weights],
[weights_std(weights.dimshuffle(0, 'x', 1)),
monotonicity_penalty(weights.dimshuffle(0, 'x', 1))])
print_to = sys.stdout
if report:
alignments_path = os.path.join(report, "alignments")
if not os.path.exists(report):
os.mkdir(report)
os.mkdir(alignments_path)
print_to = open(os.path.join(report, "report.txt"), 'w')
decoded_file = None
if decoded_save:
decoded_file = open(decoded_save, 'w')
num_examples = .0
total_nll = .0
total_errors = .0
total_length = .0
total_wer_errors = .0
total_word_length = 0.
if config.get('vocabulary'):
with open(os.path.expandvars(config['vocabulary'])) as f:
vocabulary = dict(line.split() for line in f.readlines())
def to_words(chars):
words = chars.split()
words = [vocabulary[word] if word in vocabulary
else vocabulary['<UNK>'] for word in words]
return words
for number, example in enumerate(it):
if decode_only and number not in decode_only:
continue
uttids = example.pop('uttids', None)
raw_groundtruth = example.pop('labels')
required_inputs = dict_subset(example, recognizer.inputs.keys())
print("Utterance {} ({})".format(number, uttids), file=print_to)
groundtruth = dataset.decode(raw_groundtruth)
groundtruth_text = dataset.pretty_print(raw_groundtruth, example)
costs_groundtruth, weights_groundtruth = recognizer.analyze(
inputs=required_inputs,
groundtruth=raw_groundtruth,
prediction=raw_groundtruth)[:2]
weight_std_groundtruth, mono_penalty_groundtruth = weight_statistics(
weights_groundtruth)
total_nll += costs_groundtruth.sum()
num_examples += 1
print("Groundtruth:", groundtruth_text, file=print_to)
print("Groundtruth cost:", costs_groundtruth.sum(), file=print_to)
print("Groundtruth weight std:", weight_std_groundtruth, file=print_to)
print("Groundtruth monotonicity penalty:", mono_penalty_groundtruth,
file=print_to)
print("Average groundtruth cost: {}".format(total_nll / num_examples),
file=print_to)
if nll_only:
print_to.flush()
continue
before = time.time()
try:
search_kwargs = dict(
char_discount=search_conf.get('char_discount'),
round_to_inf=search_conf.get('round_to_inf'),
stop_on=search_conf.get('stop_on'),
validate_solution_function=getattr(
data.info_dataset, 'validate_solution', None))
search_kwargs = {k: v for k, v in search_kwargs.items() if v}
outputs, search_costs = recognizer.beam_search(
required_inputs, **search_kwargs)
except CandidateNotFoundError:
logger.error('Candidate not found!')
outputs = [[]]
search_costs = [[numpy.NaN]]
took = time.time() - before
recognized = dataset.decode(outputs[0])
recognized_text = dataset.pretty_print(outputs[0], example)
if recognized:
# Theano scan doesn't work with 0 length sequences
costs_recognized, weights_recognized = recognizer.analyze(
inputs=required_inputs,
groundtruth=raw_groundtruth,
prediction=outputs[0])[:2]
weight_std_recognized, mono_penalty_recognized = weight_statistics(
weights_recognized)
error = min(1, wer(groundtruth, recognized))
else:
error = 1
total_errors += len(groundtruth) * error
total_length += len(groundtruth)
if config.get('vocabulary'):
wer_error = min(1, wer(to_words(groundtruth_text),
to_words(recognized_text)))
total_wer_errors += len(groundtruth) * wer_error
total_word_length += len(groundtruth)
if report and recognized:
show_alignment(weights_groundtruth, groundtruth, bos_symbol=True)
pyplot.savefig(os.path.join(
alignments_path, "{}.groundtruth.png".format(number)))
show_alignment(weights_recognized, recognized, bos_symbol=True)
pyplot.savefig(os.path.join(
alignments_path, "{}.recognized.png".format(number)))
if decoded_file is not None:
print("{} {}".format(uttids, ' '.join(recognized)),
file=decoded_file)
print("Decoding took:", took, file=print_to)
print("Beam search cost:", search_costs[0], file=print_to)
print("Recognized:", recognized_text, file=print_to)
if recognized:
print("Recognized cost:", costs_recognized.sum(), file=print_to)
print("Recognized weight std:", weight_std_recognized,
file=print_to)
print("Recognized monotonicity penalty:", mono_penalty_recognized,
file=print_to)
print("CER:", error, file=print_to)
print("Average CER:", total_errors / total_length, file=print_to)
if config.get('vocabulary'):
print("WER:", wer_error, file=print_to)
print("Average WER:", total_wer_errors / total_word_length, file=print_to)
print_to.flush()
def initialize_all(config, save_path, bokeh_name,
params, bokeh_server, bokeh, test_tag, use_load_ext,
load_log, fast_start):
root_path, extension = os.path.splitext(save_path)
data = Data(**config['data'])
train_conf = config['training']
recognizer = create_model(config, data, test_tag)
# Separate attention_params to be handled differently
# when regularization is applied
attention = recognizer.generator.transition.attention
attention_params = Selector(attention).get_parameters().values()
logger.info(
"Initialization schemes for all bricks.\n"
"Works well only in my branch with __repr__ added to all them,\n"
"there is an issue #463 in Blocks to do that properly.")
def show_init_scheme(cur):
result = dict()
for attr in dir(cur):
if attr.endswith('_init'):
result[attr] = getattr(cur, attr)
for child in cur.children:
result[child.name] = show_init_scheme(child)
return result
logger.info(pprint.pformat(show_init_scheme(recognizer)))
prediction, prediction_mask = add_exploration(recognizer, data, train_conf)
#
# Observables:
#
primary_observables = [] # monitored each batch
secondary_observables = [] # monitored every 10 batches
validation_observables = [] # monitored on the validation set
cg = recognizer.get_cost_graph(
batch=True, prediction=prediction, prediction_mask=prediction_mask)
labels, = VariableFilter(
applications=[recognizer.cost], name='labels')(cg)
labels_mask, = VariableFilter(
applications=[recognizer.cost], name='labels_mask')(cg)
gain_matrix = VariableFilter(
theano_name=RewardRegressionEmitter.GAIN_MATRIX)(cg)
if len(gain_matrix):
gain_matrix, = gain_matrix
primary_observables.append(
rename(gain_matrix.min(), 'min_gain'))
primary_observables.append(
rename(gain_matrix.max(), 'max_gain'))
batch_cost = cg.outputs[0].sum()
batch_size = rename(recognizer.labels.shape[1], "batch_size")
# Assumes constant batch size. `aggregation.mean` is not used because
# of Blocks #514.
cost = batch_cost / batch_size
cost.name = "sequence_total_cost"
logger.info("Cost graph is built")
# Fetch variables useful for debugging.
# It is important not to use any aggregation schemes here,
# as it's currently impossible to spread the effect of
# regularization on their variables, see Blocks #514.
cost_cg = ComputationGraph(cost)
r = recognizer
energies, = VariableFilter(
applications=[r.generator.readout.readout], name="output_0")(
cost_cg)
bottom_output = VariableFilter(
# We need name_regex instead of name because LookupTable calls itsoutput output_0
applications=[r.bottom.apply], name_regex="output")(
cost_cg)[-1]
attended, = VariableFilter(
applications=[r.generator.transition.apply], name="attended")(
cost_cg)
attended_mask, = VariableFilter(
applications=[r.generator.transition.apply], name="attended_mask")(
cost_cg)
weights, = VariableFilter(
applications=[r.generator.evaluate], name="weights")(
cost_cg)
max_recording_length = rename(bottom_output.shape[0],
"max_recording_length")
# To exclude subsampling related bugs
max_attended_mask_length = rename(attended_mask.shape[0],
"max_attended_mask_length")
max_attended_length = rename(attended.shape[0],
"max_attended_length")
max_num_phonemes = rename(labels.shape[0],
"max_num_phonemes")
min_energy = rename(energies.min(), "min_energy")
max_energy = rename(energies.max(), "max_energy")
mean_attended = rename(abs(attended).mean(),
"mean_attended")
mean_bottom_output = rename(abs(bottom_output).mean(),
"mean_bottom_output")
weights_penalty = rename(monotonicity_penalty(weights, labels_mask),
"weights_penalty")
weights_entropy = rename(entropy(weights, labels_mask),
"weights_entropy")
mask_density = rename(labels_mask.mean(),
"mask_density")
cg = ComputationGraph([
cost, weights_penalty, weights_entropy,
min_energy, max_energy,
mean_attended, mean_bottom_output,
batch_size, max_num_phonemes,
mask_density])
# Regularization. It is applied explicitly to all variables
# of interest, it could not be applied to the cost only as it
# would not have effect on auxiliary variables, see Blocks #514.
reg_config = config.get('regularization', dict())
regularized_cg = cg
if reg_config.get('dropout'):
logger.info('apply dropout')
regularized_cg = apply_dropout(cg, [bottom_output], 0.5)
if reg_config.get('noise'):
logger.info('apply noise')
noise_subjects = [p for p in cg.parameters if p not in attention_params]
regularized_cg = apply_noise(cg, noise_subjects, reg_config['noise'])
train_cost = regularized_cg.outputs[0]
if reg_config.get("penalty_coof", .0) > 0:
# big warning!!!
# here we assume that:
# regularized_weights_penalty = regularized_cg.outputs[1]
train_cost = (train_cost +
reg_config.get("penalty_coof", .0) *
regularized_cg.outputs[1] / batch_size)
if reg_config.get("decay", .0) > 0:
train_cost = (train_cost + reg_config.get("decay", .0) *
l2_norm(VariableFilter(roles=[WEIGHT])(cg.parameters)) ** 2)
train_cost = rename(train_cost, 'train_cost')
gradients = None
if reg_config.get('adaptive_noise'):
logger.info('apply adaptive noise')
if ((reg_config.get("penalty_coof", .0) > 0) or
(reg_config.get("decay", .0) > 0)):
logger.error('using adaptive noise with alignment weight panalty '
'or weight decay is probably stupid')
train_cost, regularized_cg, gradients, noise_brick = apply_adaptive_noise(
cg, cg.outputs[0],
variables=cg.parameters,
num_examples=data.get_dataset('train').num_examples,
parameters=Model(regularized_cg.outputs[0]).get_parameter_dict().values(),
**reg_config.get('adaptive_noise')
)
train_cost.name = 'train_cost'
adapt_noise_cg = ComputationGraph(train_cost)
model_prior_mean = rename(
VariableFilter(applications=[noise_brick.apply],
name='model_prior_mean')(adapt_noise_cg)[0],
'model_prior_mean')
model_cost = rename(
VariableFilter(applications=[noise_brick.apply],
name='model_cost')(adapt_noise_cg)[0],
'model_cost')
model_prior_variance = rename(
VariableFilter(applications=[noise_brick.apply],
name='model_prior_variance')(adapt_noise_cg)[0],
'model_prior_variance')
regularized_cg = ComputationGraph(
[train_cost, model_cost] +
regularized_cg.outputs +
[model_prior_mean, model_prior_variance])
primary_observables += [
regularized_cg.outputs[1], # model cost
regularized_cg.outputs[2], # task cost
regularized_cg.outputs[-2], # model prior mean
regularized_cg.outputs[-1]] # model prior variance
model = Model(train_cost)
if params:
logger.info("Load parameters from " + params)
# please note: we cannot use recognizer.load_params
# as it builds a new computation graph that dies not have
# shapred variables added by adaptive weight noise
with open(params, 'r') as src:
param_values = load_parameters(src)
model.set_parameter_values(param_values)
parameters = model.get_parameter_dict()
logger.info("Parameters:\n" +
pprint.pformat(
[(key, parameters[key].get_value().shape) for key
in sorted(parameters.keys())],
width=120))
# Define the training algorithm.
clipping = StepClipping(train_conf['gradient_threshold'])
clipping.threshold.name = "gradient_norm_threshold"
rule_names = train_conf.get('rules', ['momentum'])
core_rules = []
if 'momentum' in rule_names:
logger.info("Using scaling and momentum for training")
core_rules.append(Momentum(train_conf['scale'], train_conf['momentum']))
if 'adadelta' in rule_names:
logger.info("Using AdaDelta for training")
core_rules.append(AdaDelta(train_conf['decay_rate'], train_conf['epsilon']))
max_norm_rules = []
if reg_config.get('max_norm', False) > 0:
logger.info("Apply MaxNorm")
maxnorm_subjects = VariableFilter(roles=[WEIGHT])(cg.parameters)
if reg_config.get('max_norm_exclude_lookup', False):
maxnorm_subjects = [v for v in maxnorm_subjects
if not isinstance(get_brick(v), LookupTable)]
logger.info("Parameters covered by MaxNorm:\n"
+ pprint.pformat([name for name, p in parameters.items()
if p in maxnorm_subjects]))
logger.info("Parameters NOT covered by MaxNorm:\n"
+ pprint.pformat([name for name, p in parameters.items()
if not p in maxnorm_subjects]))
max_norm_rules = [
Restrict(VariableClipping(reg_config['max_norm'], axis=0),
maxnorm_subjects)]
burn_in = []
if train_conf.get('burn_in_steps', 0):
burn_in.append(
BurnIn(num_steps=train_conf['burn_in_steps']))
algorithm = GradientDescent(
cost=train_cost,
parameters=parameters.values(),
gradients=gradients,
step_rule=CompositeRule(
[clipping] + core_rules + max_norm_rules +
# Parameters are not changed at all
# when nans are encountered.
[RemoveNotFinite(0.0)] + burn_in),
on_unused_sources='warn')
logger.debug("Scan Ops in the gradients")
gradient_cg = ComputationGraph(algorithm.gradients.values())
for op in ComputationGraph(gradient_cg).scans:
logger.debug(op)
# More variables for debugging: some of them can be added only
# after the `algorithm` object is created.
secondary_observables += list(regularized_cg.outputs)
if not 'train_cost' in [v.name for v in secondary_observables]:
secondary_observables += [train_cost]
secondary_observables += [
algorithm.total_step_norm, algorithm.total_gradient_norm,
clipping.threshold]
for name, param in parameters.items():
num_elements = numpy.product(param.get_value().shape)
norm = param.norm(2) / num_elements ** 0.5
grad_norm = algorithm.gradients[param].norm(2) / num_elements ** 0.5
step_norm = algorithm.steps[param].norm(2) / num_elements ** 0.5
stats = tensor.stack(norm, grad_norm, step_norm, step_norm / grad_norm)
stats.name = name + '_stats'
secondary_observables.append(stats)
primary_observables += [
train_cost,
algorithm.total_gradient_norm,
algorithm.total_step_norm, clipping.threshold,
max_recording_length,
max_attended_length, max_attended_mask_length]
validation_observables += [
rename(aggregation.mean(batch_cost, batch_size), cost.name),
rename(aggregation.sum_(batch_size), 'num_utterances'),
weights_entropy, weights_penalty]
def attach_aggregation_schemes(variables):
# Aggregation specification has to be factored out as a separate
# function as it has to be applied at the very last stage
# separately to training and validation observables.
result = []
for var in variables:
if var.name == 'weights_penalty':
result.append(rename(aggregation.mean(var, batch_size),
'weights_penalty_per_recording'))
elif var.name == 'weights_entropy':
result.append(rename(aggregation.mean(var, labels_mask.sum()),
'weights_entropy_per_label'))
else:
result.append(var)
return result
mon_conf = config['monitoring']
# Build main loop.
logger.info("Initialize extensions")
extensions = []
if use_load_ext and params:
extensions.append(Load(params, load_iteration_state=True, load_log=True))
if load_log and params:
extensions.append(LoadLog(params))
extensions += [
Timing(after_batch=True),
CGStatistics(),
#CodeVersion(['lvsr']),
]
extensions.append(TrainingDataMonitoring(
primary_observables, after_batch=True))
average_monitoring = TrainingDataMonitoring(
attach_aggregation_schemes(secondary_observables),
prefix="average", every_n_batches=10)
extensions.append(average_monitoring)
validation = DataStreamMonitoring(
attach_aggregation_schemes(validation_observables),
data.get_stream("valid", shuffle=False), prefix="valid").set_conditions(
before_first_epoch=not fast_start,
every_n_epochs=mon_conf['validate_every_epochs'],
every_n_batches=mon_conf['validate_every_batches'],
after_training=False)
extensions.append(validation)
per = PhonemeErrorRate(recognizer, data,
**config['monitoring']['search'])
per_monitoring = DataStreamMonitoring(
[per], data.get_stream("valid", batches=False, shuffle=False),
prefix="valid").set_conditions(
before_first_epoch=not fast_start,
every_n_epochs=mon_conf['search_every_epochs'],
every_n_batches=mon_conf['search_every_batches'],
after_training=False)
extensions.append(per_monitoring)
track_the_best_per = TrackTheBest(
per_monitoring.record_name(per)).set_conditions(
before_first_epoch=True, after_epoch=True)
track_the_best_cost = TrackTheBest(
validation.record_name(cost)).set_conditions(
before_first_epoch=True, after_epoch=True)
extensions += [track_the_best_cost, track_the_best_per]
extensions.append(AdaptiveClipping(
algorithm.total_gradient_norm.name,
clipping, train_conf['gradient_threshold'],
decay_rate=0.998, burnin_period=500))
extensions += [
SwitchOffLengthFilter(
data.length_filter,
after_n_batches=train_conf.get('stop_filtering')),
FinishAfter(after_n_batches=train_conf.get('num_batches'),
after_n_epochs=train_conf.get('num_epochs'))
.add_condition(["after_batch"], _gradient_norm_is_none),
]
channels = [
# Plot 1: training and validation costs
[average_monitoring.record_name(train_cost),
validation.record_name(cost)],
# Plot 2: gradient norm,
[average_monitoring.record_name(algorithm.total_gradient_norm),
average_monitoring.record_name(clipping.threshold)],
# Plot 3: phoneme error rate
[per_monitoring.record_name(per)],
# Plot 4: training and validation mean weight entropy
[average_monitoring._record_name('weights_entropy_per_label'),
validation._record_name('weights_entropy_per_label')],
# Plot 5: training and validation monotonicity penalty
[average_monitoring._record_name('weights_penalty_per_recording'),
validation._record_name('weights_penalty_per_recording')]]
if bokeh:
extensions += [
Plot(bokeh_name if bokeh_name
else os.path.basename(save_path),
channels,
every_n_batches=10,
server_url=bokeh_server),]
extensions += [
Checkpoint(save_path,
before_first_epoch=not fast_start, after_epoch=True,
every_n_batches=train_conf.get('save_every_n_batches'),
save_separately=["model", "log"],
use_cpickle=True)
.add_condition(
['after_epoch'],
OnLogRecord(track_the_best_per.notification_name),
(root_path + "_best" + extension,))
.add_condition(
['after_epoch'],
OnLogRecord(track_the_best_cost.notification_name),
(root_path + "_best_ll" + extension,)),
ProgressBar()]
extensions.append(EmbedIPython(use_main_loop_run_caller_env=True))
if config['net']['criterion']['name'].startswith('mse'):
extensions.append(
LogInputsGains(
labels, cg, recognizer.generator.readout.emitter, data))
if train_conf.get('patience'):
patience_conf = train_conf['patience']
if not patience_conf.get('notification_names'):
# setdefault will not work for empty list
patience_conf['notification_names'] = [
track_the_best_per.notification_name,
track_the_best_cost.notification_name]
extensions.append(Patience(**patience_conf))
extensions.append(Printing(every_n_batches=1,
attribute_filter=PrintingFilterList()))
return model, algorithm, data, extensions