def build_xml(self, parent_node):
node = etree.SubElement(parent_node, "char")
node.text = self.value
node.attrib['position'] = self.position
if self.modifier is not None:
node.attrib['modifier'] = str(self.modifier)
def _add_filter(self, enum_elem):
filter_elem = ElementTree.SubElement(enum_elem,
'{%s}Filter' % NS_WSMAN)
filter_elem.set('Dialect', self.filter_dialect)
filter_elem.text = self.filter_query
name_elements = codelist.getroot().xpath('/codelist/metadata/name[{}@xml:lang="{}"]'.format('not(@xml:lang) or ' if language==default_lang else '',language))
description_elements = codelist.getroot().xpath('/codelist/metadata/description[{}@xml:lang="{}"]'.format('not(@xml:lang) or ' if language==default_lang else '',language))
url_elements = codelist.getroot().xpath('/codelist/metadata/url')
## JSON
json.dump(
{
'attributes': {
'name': attrib['name'],
'complete': attrib.get('complete'),
'category-codelist': attrib.get('category-codelist'),
},
'metadata': {
'name': name_elements[0].text if name_elements else '',
'description': description_elements[0].text if description_elements else '',
'url': url_elements[0].text if url_elements else ''
},
'data': codelist_dicts
},
open(os.path.join(OUTPUTDIR, 'json', language, attrib['name']+'.json'), 'w')
)
codelists_list.append(attrib['name'])
ET.SubElement(codelists, 'codelist').attrib['ref'] = attrib['name']
tree = ET.ElementTree(codelists)
tree.write(os.path.join(OUTPUTDIR, 'codelists.xml'), pretty_print=True)
json.dump(codelists_list, open(os.path.join(OUTPUTDIR, 'codelists.json'), 'w'))
def getContent(self):
if self._caller != "databrowse":
return None
else:
if self._content_mode == "full":
try:
st = os.stat(self._fullpath)
except IOError:
return "Failed To Get File Information: %s" % (self._fullpath)
else:
file_size = st[ST_SIZE]
file_mtime = time.asctime(time.localtime(st[ST_MTIME]))
file_ctime = time.asctime(time.localtime(st[ST_CTIME]))
file_atime = time.asctime(time.localtime(st[ST_ATIME]))
magicstore = magic.open(magic.MAGIC_MIME)
magicstore.load()
contenttype = magicstore.file(self._fullpath)
extension = os.path.splitext(self._fullpath)[1][1:]
icon = self._handler_support.GetIcon(contenttype, extension)
downlink = self.getURL(self._relpath, content_mode="raw", download="true")
xmlroot = etree.Element('{%s}dbhdf' % self._namespace_uri, nsmap=self.nsmap, name=os.path.basename(self._relpath), resurl=self._web_support.resurl, downlink=downlink, icon=icon)
xmlchild = etree.SubElement(xmlroot, "filename", nsmap=self.nsmap)
xmlchild.text = os.path.basename(self._fullpath)
xmlchild = etree.SubElement(xmlroot, "path", nsmap=self.nsmap)
xmlchild.text = os.path.dirname(self._fullpath)
xmlchild = etree.SubElement(xmlroot, "size", nsmap=self.nsmap)
xmlchild.text = self.ConvertUserFriendlySize(file_size)
xmlchild = etree.SubElement(xmlroot, "mtime", nsmap=self.nsmap)
xmlchild.text = file_mtime
xmlchild = etree.SubElement(xmlroot, "ctime", nsmap=self.nsmap)
xmlchild.text = file_ctime
xmlchild = etree.SubElement(xmlroot, "atime", nsmap=self.nsmap)
xmlchild.text = file_atime
# Content Type
xmlchild = etree.SubElement(xmlroot, "contenttype", nsmap=self.nsmap)
xmlchild.text = contenttype
# File Permissions
xmlchild = etree.SubElement(xmlroot, "permissions", nsmap=self.nsmap)
xmlchild.text = self.ConvertUserFriendlyPermissions(st[ST_MODE])
# User and Group
username = pwd.getpwuid(st[ST_UID])[0]
groupname = grp.getgrgid(st[ST_GID])[0]
xmlchild = etree.SubElement(xmlroot, "owner", nsmap=self.nsmap)
xmlchild.text = "%s:%s" % (username, groupname)
# Contents of File
f = open(self._fullpath)
xmlchild = etree.SubElement(xmlroot, "contents", nsmap=self.nsmap)
output, error = subprocess.Popen(['/usr/bin/h5dump', '-x', '-H', self._fullpath], stdout=subprocess.PIPE).communicate()
output = output.replace('xmlns:hdf5="http://hdfgroup.org/HDF5/XML/schema/HDF5-File.xsd"', 'xmlns:hdf5="http://hdfgroup.org/DTDs/HDF5-File"')
xmlchild.append(etree.XML(output))
#xmlchild.text = f.read()
return xmlroot
elif self._content_mode == "raw" and self._web_support.req.form['getimage'].value == "true" and 'hdfloc' in self._web_support.req.form:
hdfpath = self._web_support.req.form['hdfloc'].value
tagname = base64.urlsafe_b64encode(hdfpath)
ext='png'
if self.CacheFileExists(tagname, extension=ext):
size = os.path.getsize(self.getCacheFileName(tagname, extension=ext))
f = self.getCacheFileHandler('rb', tagname, extension=ext)
self._web_support.req.response_headers['Content-Type'] = 'image/png'
self._web_support.req.response_headers['Content-Length'] = str(size)
self._web_support.req.start_response(self._web_support.req.status, self._web_support.req.response_headers.items())
self._web_support.req.output_done = True
if 'wsgi.file_wrapper' in self._web_support.req.environ:
return self._web_support.req.environ['wsgi.file_wrapper'](f, 1024)
else:
return iter(lambda: f.read(1024))
else:
print(self._fullpath)
f = h5py.File(self._fullpath, 'r')
data = f.get(self._web_support.req.form['hdfloc'].value)
if len(data.value.shape) == 1:
pylab.figure()
pylab.plot(data.value)
imgf = self.getCacheFileHandler('w', tagname, 'png')
pylab.savefig(imgf)
imgf.close()
pylab.clf()
elif len(data.value.shape) == 2:
pylab.figure()
pylab.imshow(data.value, origin='lower')
imgf = self.getCacheFileHandler('w', tagname, 'png')
pylab.savefig(imgf)
imgf.close()
pylab.clf()
f.close()
size = os.path.getsize(self.getCacheFileName(tagname, extension=ext))
f = self.getCacheFileHandler('rb', tagname, extension=ext)
self._web_support.req.response_headers['Content-Type'] = 'image/png'
self._web_support.req.response_headers['Content-Length'] = str(size)
self._web_support.req.start_response(self._web_support.req.status, self._web_support.req.response_headers.items())
self._web_support.req.output_done = True
if 'wsgi.file_wrapper' in self._web_support.req.environ:
return self._web_support.req.environ['wsgi.file_wrapper'](f, 1024)
else:
return iter(lambda: f.read(1024))
elif self._content_mode == "raw":
size = os.path.getsize(self._fullpath)
magicstore = magic.open(magic.MAGIC_MIME)
magicstore.load()
contenttype = magicstore.file(self._fullpath)
f = open(self._fullpath, "rb")
self._web_support.req.response_headers['Content-Type'] = contenttype
self._web_support.req.response_headers['Content-Length'] = str(size)
self._web_support.req.response_headers['Content-Disposition'] = "attachment; filename=" + os.path.basename(self._fullpath)
self._web_support.req.start_response(self._web_support.req.status, self._web_support.req.response_headers.items())
self._web_support.req.output_done = True
if 'wsgi.file_wrapper' in self._web_support.req.environ:
return self._web_support.req.environ['wsgi.file_wrapper'](f, 1024)
else:
return iter(lambda: f.read(1024))
else:
raise self.RendererException("Invalid Content Mode")
pass
# 将 第 0014 题中的 student.xls 文件中的内容写到 student.xml 文件中，如
import xlrd
from lxml import etree
root = etree.Element('network')
root.set('name', 'Network')
tree = etree.ElementTree(root)
name = etree.Element('nodes')
root.append(name)
wb = xlrd.open_workbook("emme_nodes1.xls")
sh = wb.sheet_by_index(0)
for row in range(1, sh.nrows):
val = sh.row_values(row)
element = etree.SubElement(name, 'node')
element.set('id', str(int(val[0])))
element.set('x', str(val[1]))
element.set('y', str(val[2]))
print etree.tostring(root,pretty_print=True)
def encode_polyline_object(cls, obj, categories):
ann_elem = cls.encode_annotation_base(obj)
ET.SubElement(ann_elem, 'label').text = \
str(cls._get_label(obj.label, categories))
ET.SubElement(ann_elem, 'label_id').text = str(obj.label)
x, y, w, h = obj.get_bbox()
area = w * h
bbox_elem = ET.SubElement(ann_elem, 'bbox')
ET.SubElement(bbox_elem, 'x').text = str(x)
ET.SubElement(bbox_elem, 'y').text = str(y)
ET.SubElement(bbox_elem, 'w').text = str(w)
ET.SubElement(bbox_elem, 'h').text = str(h)
ET.SubElement(bbox_elem, 'area').text = str(area)
points = obj.points
for i in range(0, len(points), 2):
point_elem = ET.SubElement(ann_elem, 'point')
ET.SubElement(point_elem, 'x').text = str(points[i])
ET.SubElement(point_elem, 'y').text = str(points[i + 1])
return ann_elem
def _create_xml_content(self, export_data):
"""
Creates an xml content based on the input data and the EDI report template and puts it into the 'body' field of the 'self'.
:param export_data: a list of dictionaries with element names and values
This method is called explicitly when the EDI document is created.
"""
report_obj = self.env['report']
self.body = report_obj.get_html(
self, 'eintegration_edi_manager.edi_document_report_template')
root = etree.fromstring(self.body.lstrip())
message_body = root.find('.//MESSAGEBODY')
element_list = []
for export_data_item in export_data:
top = None
for exported_field in export_data_item['names']:
element_names = exported_field.split('/')
field_element = None
parent_element = top
for element_name in element_names:
if top is None:
field_element = etree.Element(element_name)
top = field_element
else:
field_element = parent_element.find(element_name)
if field_element is None:
field_element = parent_element if parent_element.tag == element_name else etree.SubElement(
parent_element, element_name)
parent_element = field_element
data_value = export_data_item['data'].pop(0)
if isinstance(data_value, (int, float)):
field_element.text = CDATA(str(data_value))
else:
field_element.text = CDATA(data_value)
element_list.append(top)
for element in element_list:
message_body.append(element)
self.body = "<?xml version='1.0' encoding='ISO-8859-1'?>\n" + etree.tostring(
root, pretty_print=True)
def TC_pafHTR(
root,
relativeTime,
HTRSEL,
SET,
PVALUE,
IVALUE,
DVALUE,
Timeline_settings,
comment="",
):
if not (_Globals.latestRelativeTime <= relativeTime <=
Timeline_settings["duration"]):
Logger.error(
"Invalid argument: negative relativeTime, decreasing relativeTime, exceeding timeline duration"
)
raise ValueError
if not ((1 <= HTRSEL <= 3 or 64 <= HTRSEL <= 67 or 128 <= HTRSEL <= 131
or 192 <= HTRSEL <= 195) and type(HTRSEL) == int):
Logger.error("Invalid argument: HTRSEL")
raise ValueError
if not (86 <= SET <= 2285 and type(SET) == int):
Logger.error("Invalid argument: 86 > SET or SET > 2285")
raise ValueError
if not (0 <= PVALUE <= 65536 and type(PVALUE) == int):
Logger.error("Invalid argument: PVALUE")
raise ValueError
if not (0 <= IVALUE <= 65536 and type(IVALUE) == int):
Logger.error("Invalid argument: IVALUE")
raise ValueError
if not (0 <= DVALUE <= 65536 and type(DVALUE) == int):
Logger.error("Invalid argument: DVALUE")
raise ValueError
etree.SubElement(root[1], "command", mnemonic="TC_pafHTR")
etree.SubElement(root[1][len(root[1]) - 1], "relativeTime")
root[1][len(root[1]) - 1][0].text = str(int(relativeTime))
etree.SubElement(root[1][len(root[1]) - 1], "comment")
root[1][len(root[1]) - 1][1].text = comment
etree.SubElement(root[1][len(root[1]) - 1], "tcArguments")
etree.SubElement(root[1][len(root[1]) - 1][2],
"tcArgument",
mnemonic="HTRSEL")
root[1][len(root[1]) - 1][2][0].text = str(HTRSEL)
etree.SubElement(root[1][len(root[1]) - 1][2],
"tcArgument",
mnemonic="SET")
root[1][len(root[1]) - 1][2][1].text = str(SET)
etree.SubElement(root[1][len(root[1]) - 1][2],
"tcArgument",
mnemonic="PVALUE")
root[1][len(root[1]) - 1][2][2].text = str(PVALUE)
etree.SubElement(root[1][len(root[1]) - 1][2],
"tcArgument",
mnemonic="IVALUE")
root[1][len(root[1]) - 1][2][3].text = str(IVALUE)
etree.SubElement(root[1][len(root[1]) - 1][2],
"tcArgument",
mnemonic="DVALUE")
root[1][len(root[1]) - 1][2][4].text = str(DVALUE)
incremented_time = relativeTime + Timeline_settings["CMD_separation"]
_Globals.latestRelativeTime = relativeTime
return incremented_time
def TC_pafCCDMain(
root,
relativeTime,
CCDSEL,
PWR,
TEXPMS,
TEXPIMS,
NRSKIP,
NRBIN,
NROW,
NCBIN,
NCOL,
WDW,
JPEGQ,
SYNC,
NCBINFPGA,
SIGMODE,
GAIN,
NFLUSH,
NCSKIP,
Timeline_settings,
comment="",
):
if not (_Globals.latestRelativeTime <= relativeTime <=
Timeline_settings["duration"]):
Logger.error(
"Invalid argument: negative relativeTime, decreasing relativeTime, exceeding timeline duration"
)
raise ValueError
if not (1 <= CCDSEL <= 127 and type(CCDSEL) == int):
Logger.error("Invalid argument: CCDSEL")
raise ValueError
if not (0 <= PWR <= 255 and type(PWR) == int):
Logger.error("Invalid argument: PWR")
raise ValueError
if not (0 <= NRSKIP <= 510 and type(NRSKIP) == int):
Logger.error("Invalid argument: NRSKIP")
raise ValueError
if not (1 <= NRBIN <= 63 and type(NRBIN) == int):
Logger.error("Invalid argument: NRBIN")
raise ValueError
if not (1 <= NROW <= 511 and type(NROW) == int):
Logger.error("Invalid argument: NROW")
raise ValueError
if not (0 <= NCSKIP <= 2046 and type(NCSKIP) == int):
Logger.error("Invalid argument: NCSKIP")
raise ValueError
if not (1 <= NCBIN <= 255 and type(NCBIN) == int):
Logger.error("Invalid argument: NCBIN")
raise ValueError
if not (1 <= NCOL <= 2047 and type(NCOL) == int):
Logger.error("Invalid argument: NCOL")
raise ValueError
if not (0 <= NCBINFPGA <= 7 and type(NCBINFPGA) == int):
Logger.error(
"Invalid argument: NCBINFPGA, if NCBINFPGA=8 then the CRB may stop working"
)
raise ValueError
if not (1 <= SIGMODE <= 255 and type(SIGMODE) == int):
Logger.error(
"Invalid argument: SIGMODE, if SIGMODE=0 then the CCDs may be unstable and stop working."
)
raise ValueError
if not ((0 <= WDW <= 7 or WDW == 128) and type(WDW) == int):
Logger.error("Invalid argument: WDW")
raise ValueError
# if( WDW == 7 and JPEGQ <= 100):
# Logger.error('Invalid argument: WDW == 7, but JPEGQ <= 100')
# raise ValueError
# if( 0 <= WDW <= 4 and JPEGQ >= 101):
# Logger.error('Invalid argument: 0 <= WDW <= 4, but JPEGQ >= 101')
# raise ValueError
if not (0 <= JPEGQ <= 100 and type(JPEGQ) == int):
Logger.error("Invalid argument: JPEGQ")
raise ValueError
if not (0 <= GAIN <= 7 and type(GAIN) == int):
Logger.error("Invalid argument: GAIN")
raise ValueError
if not (0 <= NFLUSH <= 1023 and type(NFLUSH) == int):
Logger.error("Invalid argument: NFLUSH")
raise ValueError
if not (NROW * NRBIN + NRSKIP <= 511):
Logger.error("Invalid argument: NROW * NRBIN + NRSKIP exceeds 511")
raise ValueError
if not ((NCOL + 1) * NCBIN * 2**NCBINFPGA + NCSKIP <= 2048):
Logger.error(
"Invalid argument: (NCOL+1) * NCBIN * 2^NCBINFPGA + NCSKIP exceeds 2048"
)
raise ValueError
T_readout, T_delay, T_Extra = calculate_time_per_row(
NCOL=NCOL,
NCBIN=NCBIN,
NCBINFPGA=NCBINFPGA,
NRSKIP=NRSKIP,
NROW=NROW,
NRBIN=NRBIN,
NFLUSH=NFLUSH,
)
ReadOutTime = T_readout + T_delay + T_Extra
# Logger.debug('ReadOutTime = '+str(ReadOutTime))
if not (0 <= TEXPMS <= 32000 and TEXPMS + ReadOutTime < TEXPIMS):
Logger.error(
"Invalid argument: 32000 < TEXPMS < 0 or TEXPMS + ReadOutTime > TEXPIMS"
)
raise ValueError
if not (type(TEXPMS) == int and type(TEXPIMS) == int):
Logger.error("Invalid argument: TEXPMS or TEXPIMS is not an integer")
raise TypeError
etree.SubElement(root[1], "command", mnemonic="TC_pafCCD")
etree.SubElement(root[1][len(root[1]) - 1], "relativeTime")
root[1][len(root[1]) - 1][0].text = str(int(relativeTime))
etree.SubElement(root[1][len(root[1]) - 1], "comment")
root[1][len(root[1]) - 1][1].text = comment
etree.SubElement(root[1][len(root[1]) - 1], "tcArguments")
etree.SubElement(root[1][len(root[1]) - 1][2],
"tcArgument",
mnemonic="CCDSEL")
root[1][len(root[1]) - 1][2][0].text = str(CCDSEL)
etree.SubElement(root[1][len(root[1]) - 1][2],
"tcArgument",
mnemonic="PWR")
root[1][len(root[1]) - 1][2][1].text = str(PWR)
etree.SubElement(root[1][len(root[1]) - 1][2],
"tcArgument",
mnemonic="WDW")
root[1][len(root[1]) - 1][2][2].text = str(WDW)
etree.SubElement(root[1][len(root[1]) - 1][2],
"tcArgument",
mnemonic="JPEGQ")
root[1][len(root[1]) - 1][2][3].text = str(JPEGQ)
etree.SubElement(root[1][len(root[1]) - 1][2],
"tcArgument",
mnemonic="SYNC")
root[1][len(root[1]) - 1][2][4].text = str(SYNC)
etree.SubElement(root[1][len(root[1]) - 1][2],
"tcArgument",
mnemonic="TEXPIMS")
root[1][len(root[1]) - 1][2][5].text = str(TEXPIMS)
etree.SubElement(root[1][len(root[1]) - 1][2],
"tcArgument",
mnemonic="TEXPMS")
root[1][len(root[1]) - 1][2][6].text = str(TEXPMS)
etree.SubElement(root[1][len(root[1]) - 1][2],
"tcArgument",
mnemonic="GAIN")
root[1][len(root[1]) - 1][2][7].text = str(GAIN)
etree.SubElement(root[1][len(root[1]) - 1][2],
"tcArgument",
mnemonic="NFLUSH")
root[1][len(root[1]) - 1][2][8].text = str(NFLUSH)
etree.SubElement(root[1][len(root[1]) - 1][2],
"tcArgument",
mnemonic="NRSKIP")
root[1][len(root[1]) - 1][2][9].text = str(NRSKIP)
etree.SubElement(root[1][len(root[1]) - 1][2],
"tcArgument",
mnemonic="NRBIN")
root[1][len(root[1]) - 1][2][10].text = str(NRBIN)
etree.SubElement(root[1][len(root[1]) - 1][2],
"tcArgument",
mnemonic="NROW")
root[1][len(root[1]) - 1][2][11].text = str(NROW)
etree.SubElement(root[1][len(root[1]) - 1][2],
"tcArgument",
mnemonic="NCSKIP")
root[1][len(root[1]) - 1][2][12].text = str(NCSKIP)
etree.SubElement(root[1][len(root[1]) - 1][2],
"tcArgument",
mnemonic="NCBIN")
root[1][len(root[1]) - 1][2][13].text = str(NCBIN)
etree.SubElement(root[1][len(root[1]) - 1][2],
"tcArgument",
mnemonic="NCOL")
root[1][len(root[1]) - 1][2][14].text = str(NCOL)
etree.SubElement(root[1][len(root[1]) - 1][2],
"tcArgument",
mnemonic="NCBINFPGA")
root[1][len(root[1]) - 1][2][15].text = str(NCBINFPGA)
etree.SubElement(root[1][len(root[1]) - 1][2],
"tcArgument",
mnemonic="SIGMODE")
root[1][len(root[1]) - 1][2][16].text = str(SIGMODE)
incremented_time = relativeTime + Timeline_settings["CMD_separation"]
_Globals.latestRelativeTime = relativeTime
return incremented_time
def main(argv):
if len(argv) < 3:
print("usage: ./run.py </path/to/genre.csv> <output_dir>")
sys.exit(1)
genre_csv = argv[1]
out_dir = argv[2]
filter_dir = argv[3]
if not os.path.isfile(genre_csv):
print("Not a file: " + str(genre_csv))
sys.exit(1)
if not os.path.isdir(out_dir):
print("Not a directory: " + str(out_dir))
sys.exit(1)
filter_books = os.listdir(filter_dir)
genres = {}
genre_id = 1
with open(genre_csv, newline='') as csvfile:
csvreader = csv.reader(csvfile, delimiter=',', quotechar='"')
for row in csvreader:
genre = row[0]
identifier = row[1]
title = row[2]
available = row[3]
if genre is None or genre == "":
continue
if identifier not in filter_books:
continue
if genre not in genres:
genres[genre] = {"id": str(genre_id), "books": {}}
genre_id += 1
genres[genre]["books"][identifier] = {
"title": title,
"available": available
}
sorted_genres = sorted([genre for genre in genres],
key=lambda genre: len(genres[genre]["books"]),
reverse=True)
genre_list_csv = os.path.join(out_dir, "genres.csv")
with open(genre_list_csv, 'w', newline='') as csvfile:
csvwriter = csv.writer(csvfile,
delimiter=',',
quotechar='"',
quoting=csv.QUOTE_ALL)
for genre in sorted_genres:
csvwriter.writerow([
genre, genres[genre]["id"] + ".xml",
str(len(genres[genre]["books"]))
])
for genre in sorted_genres:
genre_xml = os.path.join(out_dir, genres[genre]["id"] + ".xml")
# <active_loans>...</active_loans>
active_loans = ET.Element("active_loans")
# <result><success>true</success><message/></result>
result = ET.SubElement(active_loans, "result")
success = ET.SubElement(result, "success")
success.text = "true"
message = ET.SubElement(result, "message")
# <data><books>...</books></data>
data = ET.SubElement(active_loans, "data")
data.append(ET.Comment(" " + genre + " "))
books = ET.SubElement(data, "books")
for identifier in genres[genre]["books"]:
# <book><id>...</id><title>...</title></book>
book = ET.SubElement(books, "book")
id_element = ET.SubElement(book, "id")
id_element.text = identifier
title = ET.SubElement(book, "title")
title.text = genres[genre]["books"][identifier]["title"]
book.append(
ET.Comment(" " +
genres[genre]["books"][identifier]["available"] +
" "))
tree = ET.ElementTree(active_loans)
tree.write(genre_xml,
xml_declaration=True,
encoding='UTF-8',
pretty_print=True)
def TC_pafUpload(root,
relativeTime,
PINDEX,
PTOTAL,
WFLASH,
NIMG,
IMG,
Timeline_settings,
comment=""):
if not (_Globals.latestRelativeTime <= relativeTime <=
Timeline_settings["duration"]):
Logger.error(
"Invalid argument: negative relativeTime, decreasing relativeTime, exceeding timeline duration"
)
raise ValueError
if not (0 <= PINDEX and type(PINDEX) == int):
Logger.error("Invalid argument: PINDEX")
raise ValueError
if not (0 <= PTOTAL and type(PTOTAL) == int):
Logger.error("Invalid argument: PTOTAL")
raise ValueError
if not (PINDEX <= (PTOTAL - 1)):
Logger.error("Invalid argument: PINDEX or PTOTAL")
raise ValueError
if not (NIMG == len(IMG) and type(NIMG) == int):
Logger.error("Invalid argument: NIMG")
raise ValueError
if not (0 <= WFLASH <= 1 and type(WFLASH) == int):
Logger.error("Invalid argument: WFLASH")
raise ValueError
etree.SubElement(root[1], "command", mnemonic="TC_pafUPLOAD")
etree.SubElement(root[1][len(root[1]) - 1], "relativeTime")
root[1][len(root[1]) - 1][0].text = str(int(relativeTime))
etree.SubElement(root[1][len(root[1]) - 1], "comment")
root[1][len(root[1]) - 1][1].text = comment
etree.SubElement(root[1][len(root[1]) - 1], "tcArguments")
etree.SubElement(root[1][len(root[1]) - 1][2],
"tcArgument",
mnemonic="PINDEX")
root[1][len(root[1]) - 1][2][0].text = str(PINDEX)
etree.SubElement(root[1][len(root[1]) - 1][2],
"tcArgument",
mnemonic="PTOTAL")
root[1][len(root[1]) - 1][2][1].text = str(PTOTAL)
etree.SubElement(root[1][len(root[1]) - 1][2],
"tcArgument",
mnemonic="WFLASH")
root[1][len(root[1]) - 1][2][2].text = str(WFLASH)
etree.SubElement(root[1][len(root[1]) - 1][2],
"tcArgument",
mnemonic="NIMG")
root[1][len(root[1]) - 1][2][3].text = str(NIMG)
x = 4
for Image in IMG:
if not (0 <= Image <= 255 and type(Image) == int):
Logger.error("Invalid argument: Image")
raise ValueError
etree.SubElement(root[1][len(root[1]) - 1][2],
"tcArgument",
mnemonic="IMG")
root[1][len(root[1]) - 1][2][x].text = str(Image)
x = x + 1
incremented_time = relativeTime + Timeline_settings["CMD_separation"]
_Globals.latestRelativeTime = relativeTime
return incremented_time
def effect(self):
if len(self.options.ids) < 2:
inkex.errormsg("This extension requires two selected paths.")
exit()
obj = self.svg.selected[self.options.ids[0]]
envelope = self.svg.selected[self.options.ids[1]]
if obj.get(inkex.addNS('type', 'sodipodi')):
inkex.errormsg(
"The first selected object is of type '%s'.\nTry using the procedure Path->Object to Path."
% obj.get(inkex.addNS('type', 'sodipodi')))
exit()
if obj.tag == inkex.addNS('path', 'svg') or obj.tag == inkex.addNS(
'g', 'svg'):
if envelope.tag == inkex.addNS('path', 'svg'):
mat = envelope.transform * Transform([[1.0, 0.0, 0.0],
[0.0, 1.0, 0.0]])
path = CubicSuperPath(envelope.get('d'))
Path(path).transform(mat)
absolute_envelope_path = envelope.get('d')
# inkex.debug(absolute_envelope_path)
coords_to_project = self.envelope2coords(
absolute_envelope_path)
if obj.tag == inkex.addNS('path', 'svg'):
mat = obj.transform * Transform([[1.0, 0.0, 0.0],
[0.0, 1.0, 0.0]])
absolute_d = str(Path(obj.get('d')))
path = CubicSuperPath(absolute_d)
Path(path).transform(mat)
absolute_object_path = str(path)
# inkex.debug(absolute_object_path)
elif obj.tag == inkex.addNS('g', 'svg'):
absolute_object_path = ""
for p in obj.iterfind(
".//{http://www.w3.org/2000/svg}path"):
absolute_d = str(Path(p.get('d')))
mat = p.transform * Transform([[1.0, 0.0, 0.0],
[0.0, 1.0, 0.0]])
path = CubicSuperPath(absolute_d)
Path(path).transform(mat)
absolute_object_path += str(Path(path))
# inkex.debug(absolute_object_path)
new_path = projection(absolute_object_path, coords_to_project)
attributes = {'d': new_path}
new_element = etree.SubElement(self.svg.get_current_layer(),
inkex.addNS('path', 'svg'),
attributes)
else:
if envelope.tag == inkex.addNS('g', 'svg'):
inkex.errormsg(
"The second selected object is a group, not a path.\nTry using the procedure Object->Ungroup."
)
else:
inkex.errormsg(
"The second selected object is not a path.\nTry using the procedure Path->Object to Path."
)
exit()
else:
inkex.errormsg(
"The first selected object is not a path.\nTry using the procedure Path->Object to Path."
)
exit()
def parse_html(data, log=None, decoder=None, preprocessor=None,
filename='<string>', non_html_file_tags=frozenset()):
if log is None:
from calibre.utils.logging import default_log
log = default_log
filename = force_unicode(filename, enc=filesystem_encoding)
if not isinstance(data, unicode):
if decoder is not None:
data = decoder(data)
else:
data = xml_to_unicode(data)[0]
data = strip_encoding_declarations(data)
if preprocessor is not None:
data = preprocessor(data)
# There could be null bytes in data if it had � entities in it
data = data.replace('\0', '')
# Remove DOCTYPE declaration as it messes up parsing
# In particular, it causes tostring to insert xmlns
# declarations, which messes up the coercing logic
idx = data.find('<html')
if idx == -1:
idx = data.find('<HTML')
if idx > -1:
pre = data[:idx]
data = data[idx:]
if '<!DOCTYPE' in pre: # Handle user defined entities
user_entities = {}
for match in re.finditer(r'<!ENTITY\s+(\S+)\s+([^>]+)', pre):
val = match.group(2)
if val.startswith('"') and val.endswith('"'):
val = val[1:-1]
user_entities[match.group(1)] = val
if user_entities:
pat = re.compile(r'&(%s);'%('|'.join(user_entities.keys())))
data = pat.sub(lambda m:user_entities[m.group(1)], data)
data = clean_word_doc(data, log)
# Setting huge_tree=True causes crashes in windows with large files
parser = etree.XMLParser(no_network=True)
# Try with more & more drastic measures to parse
try:
data = etree.fromstring(data, parser=parser)
except etree.XMLSyntaxError:
log.debug('Initial parse failed, using more'
' forgiving parsers')
data = xml_replace_entities(data)
try:
data = etree.fromstring(data, parser=parser)
except etree.XMLSyntaxError:
log.debug('Parsing %s as HTML' % filename)
try:
data = html5_parse(data)
except:
log.exception(
'HTML 5 parsing failed, falling back to older parsers')
data = _html4_parse(data)
if data.tag == 'HTML':
# Lower case all tag and attribute names
data.tag = data.tag.lower()
for x in data.iterdescendants():
try:
x.tag = x.tag.lower()
for key, val in list(x.attrib.iteritems()):
del x.attrib[key]
key = key.lower()
x.attrib[key] = val
except:
pass
if barename(data.tag) != 'html':
if barename(data.tag) in non_html_file_tags:
raise NotHTML(data.tag)
log.warn('File %r does not appear to be (X)HTML'%filename)
nroot = etree.fromstring('<html></html>')
has_body = False
for child in list(data):
if isinstance(child.tag, (unicode, str)) and barename(child.tag) == 'body':
has_body = True
break
parent = nroot
if not has_body:
log.warn('File %r appears to be a HTML fragment'%filename)
nroot = etree.fromstring('<html><body/></html>')
parent = nroot[0]
for child in list(data.iter()):
oparent = child.getparent()
if oparent is not None:
oparent.remove(child)
parent.append(child)
data = nroot
# Force into the XHTML namespace
if not namespace(data.tag):
log.warn('Forcing', filename, 'into XHTML namespace')
data.attrib['xmlns'] = XHTML_NS
data = etree.tostring(data, encoding=unicode)
try:
data = etree.fromstring(data, parser=parser)
except:
data = data.replace(':=', '=').replace(':>', '>')
data = data.replace('<http:/>', '')
try:
data = etree.fromstring(data, parser=parser)
except etree.XMLSyntaxError:
log.warn('Stripping comments from %s'%
filename)
data = re.compile(r'<!--.*?-->', re.DOTALL).sub('',
data)
data = data.replace(
"<?xml version='1.0' encoding='utf-8'?><o:p></o:p>",
'')
data = data.replace("<?xml version='1.0' encoding='utf-8'??>", '')
try:
data = etree.fromstring(data,
parser=RECOVER_PARSER)
except etree.XMLSyntaxError:
log.warn('Stripping meta tags from %s'% filename)
data = re.sub(r'<meta\s+[^>]+?>', '', data)
data = etree.fromstring(data, parser=RECOVER_PARSER)
elif namespace(data.tag) != XHTML_NS:
# OEB_DOC_NS, but possibly others
ns = namespace(data.tag)
attrib = dict(data.attrib)
nroot = etree.Element(XHTML('html'),
nsmap={None: XHTML_NS}, attrib=attrib)
for elem in data.iterdescendants():
if isinstance(elem.tag, basestring) and \
namespace(elem.tag) == ns:
elem.tag = XHTML(barename(elem.tag))
for elem in data:
nroot.append(elem)
data = nroot
data = merge_multiple_html_heads_and_bodies(data, log)
# Ensure has a <head/>
head = xpath(data, '/h:html/h:head')
head = head[0] if head else None
if head is None:
log.warn('File %s missing <head/> element' % filename)
head = etree.Element(XHTML('head'))
data.insert(0, head)
title = etree.SubElement(head, XHTML('title'))
title.text = _('Unknown')
elif not xpath(data, '/h:html/h:head/h:title'):
title = etree.SubElement(head, XHTML('title'))
title.text = _('Unknown')
# Ensure <title> is not empty
title = xpath(data, '/h:html/h:head/h:title')[0]
if not title.text or not title.text.strip():
title.text = _('Unknown')
# Remove any encoding-specifying <meta/> elements
for meta in META_XP(data):
meta.getparent().remove(meta)
meta = etree.SubElement(head, XHTML('meta'),
attrib={'http-equiv': 'Content-Type'})
meta.set('content', 'text/html; charset=utf-8') # Ensure content is second
# attribute
# Ensure has a <body/>
if not xpath(data, '/h:html/h:body'):
body = xpath(data, '//h:body')
if body:
body = body[0]
body.getparent().remove(body)
data.append(body)
else:
log.warn('File %s missing <body/> element' % filename)
etree.SubElement(data, XHTML('body'))
# Remove microsoft office markup
r = [x for x in data.iterdescendants(etree.Element) if 'microsoft-com' in x.tag]
for x in r:
x.tag = XHTML('span')
# Remove lang redefinition inserted by the amazing Microsoft Word!
body = xpath(data, '/h:html/h:body')[0]
for key in list(body.attrib.keys()):
if key == 'lang' or key.endswith('}lang'):
body.attrib.pop(key)
def remove_elem(a):
p = a.getparent()
idx = p.index(a) -1
p.remove(a)
if a.tail:
if idx <= 0:
if p.text is None:
p.text = ''
p.text += a.tail
else:
if p[idx].tail is None:
p[idx].tail = ''
p[idx].tail += a.tail
# Remove hyperlinks with no content as they cause rendering
# artifacts in browser based renderers
# Also remove empty <b>, <u> and <i> tags
for a in xpath(data, '//h:a[@href]|//h:i|//h:b|//h:u'):
if a.get('id', None) is None and a.get('name', None) is None \
and len(a) == 0 and not a.text:
remove_elem(a)
# Convert <br>s with content into paragraphs as ADE can't handle
# them
for br in xpath(data, '//h:br'):
if len(br) > 0 or br.text:
br.tag = XHTML('div')
# Remove any stray text in the <head> section and format it nicely
data.text = '\n '
head = xpath(data, '//h:head')
if head:
head = head[0]
head.text = '\n '
head.tail = '\n '
for child in head:
child.tail = '\n '
child.tail = '\n '
return data
def embed_all_fonts(container, stats, report):
all_font_rules = tuple(itervalues(stats.all_font_rules))
warned = set()
rules, nrules = [], {}
modified = set()
for path in container.spine_items:
name = container.abspath_to_name(path)
fu = stats.font_usage_map.get(name, None)
fs = stats.font_spec_map.get(name, None)
fr = stats.font_rule_map.get(name, None)
if None in (fs, fu, fr):
continue
fs = {icu_lower(x) for x in fs}
for font in itervalues(fu):
if icu_lower(font['font-family']) not in fs:
continue
rule = matching_rule(font, fr)
if rule is None:
# This font was not already embedded in this HTML file, before
# processing started
key = font_key(font)
rule = nrules.get(key)
if rule is None:
rule = embed_font(container, font, all_font_rules, report,
warned)
if rule is not None:
rules.append(rule)
nrules[key] = rule
modified.add(name)
stats.font_stats[rule['name']] = font['text']
else:
# This font was previously embedded by this code, update its stats
stats.font_stats[rule['name']] |= font['text']
modified.add(name)
if not rules:
report(_('No embeddable fonts found'))
return False
# Write out CSS
rules = [
';\n\t'.join(
'%s: %s' % (k, '"%s"' % v if k == 'font-family' else v)
for k, v in iteritems(rulel)
if (k in props and props[k] != v and v != '400') or k == 'src')
for rulel in rules
]
css = '\n\n'.join(['@font-face {\n\t%s\n}' % r for r in rules])
item = container.generate_item('fonts.css', id_prefix='font_embed')
name = container.href_to_name(item.get('href'), container.opf_name)
with container.open(name, 'wb') as out:
out.write(css.encode('utf-8'))
# Add link to CSS in all files that need it
for spine_name in modified:
root = container.parsed(spine_name)
head = root.xpath('//*[local-name()="head"][1]')[0]
href = container.name_to_href(name, spine_name)
etree.SubElement(head,
XHTML('link'),
rel='stylesheet',
type='text/css',
href=href).tail = '\n'
container.dirty(spine_name)
return True
def write_into(self, elem):
ec = ET.SubElement(elem, 'Clan', {'name': self.name, 'id': self.id})
def TC_acfLimbPointingAltitudeOffset(root,
relativeTime,
Initial,
Final,
Rate,
Timeline_settings,
comment=""):
"""Schedules Pointing Command
If the desired pointing altitude is already set, the maximum TEXPMS last set with a CCD_macro is added to *relativeTime*.
Otherwise if Rate == 0, a delay equal to *Timeline_settings['pointing_stabilization']* is added to *relativeTime*.
If Rate != 0, only *Timeline_settings['CMD_separation']* is added to *relativeTime* to allow the payload to enter operation mode during the sweep.
"""
if not (_Globals.latestRelativeTime <= relativeTime <=
Timeline_settings["duration"]):
Logger.error(
"Invalid argument: negative relativeTime, decreasing relativeTime, exceeding timeline duration"
)
raise ValueError
if not (-60000 <= Initial <= 230000 and type(Initial) == int):
Logger.error("Invalid argument: Initial")
raise ValueError
if not (-60000 <= Final <= 230000 and type(Final) == int):
Logger.error("Invalid argument: Final")
raise ValueError
if not (-5000 <= Rate <= 5000 and
(type(Rate) == int or type(Rate) == float)):
Logger.error("Invalid argument: Rate")
raise ValueError
if Rate != 0 and sign(Final - Initial) != sign(Rate):
Logger.error("Invalid argument: sign(Final - Initial) != sign(Rate)")
raise ValueError
current_pointing = _Globals.current_pointing
Logger.debug("current_pointing: " + str(current_pointing))
Logger.debug("Initial: " + str(Initial) + ", Final: " + str(Final) +
", Rate: " + str(Rate))
# if(current_pointing != Final or current_pointing != Initial ):
# Logger.debug('Scheduling pointing command')
etree.SubElement(root[1],
"command",
mnemonic="TC_acfLimbPointingAltitudeOffset")
etree.SubElement(root[1][len(root[1]) - 1], "relativeTime")
root[1][len(root[1]) - 1][0].text = str(int(relativeTime))
etree.SubElement(root[1][len(root[1]) - 1], "comment")
root[1][len(root[1]) - 1][1].text = comment
etree.SubElement(root[1][len(root[1]) - 1], "tcArguments")
etree.SubElement(root[1][len(root[1]) - 1][2],
"tcArgument",
mnemonic="Initial")
root[1][len(root[1]) - 1][2][0].text = str(Initial)
etree.SubElement(root[1][len(root[1]) - 1][2],
"tcArgument",
mnemonic="Final")
root[1][len(root[1]) - 1][2][1].text = str(Final)
etree.SubElement(root[1][len(root[1]) - 1][2],
"tcArgument",
mnemonic="Rate")
root[1][len(root[1]) - 1][2][2].text = str(Rate)
if Rate != 0:
incremented_time = relativeTime + Timeline_settings["CMD_separation"]
_Globals.current_pointing = None
Logger.debug(
'Rate != 0, meaning a sweep is scheduled. Next CMD is only staggered by Timeline_settings["CMD_separation"]'
)
elif current_pointing == Final and current_pointing == Initial:
_Globals.current_pointing = Final
incremented_time = (relativeTime +
int(ceil(_Globals.LargestSetTEXPMS / 1000)) +
Timeline_settings["CMD_separation"])
Logger.debug(
'Satellite is already orientated the right way. Next CMD is staggered by Timeline_settings["CMD_separation"]+_Globals.LargestSetTEXPMS/1000, rounded up.'
)
Logger.debug("_Globals.LargestSetTEXPMS: " +
str(_Globals.LargestSetTEXPMS))
elif Rate == 0:
_Globals.current_pointing = Final
incremented_time = relativeTime + Timeline_settings[
"pointing_stabilization"]
Logger.debug(
'Satellite is not orientated the right way. Next CMD is staggered by Timeline_settings["pointing_stabilization"]'
)
# else:
# Logger.debug('Skipping pointing command as satellite is already oriented the desired way')
# incremented_time = relativeTime
# incremented_time = relativeTime+Timeline_settings['CMD_separation']
_Globals.latestRelativeTime = relativeTime
return incremented_time
for key, value in read_dictionary.items():
urls.append(key)
for k,v in value.items():
for k in v:
urls.append(k)
#Delete duplicates.
print (len(urls))
urls = f7(urls)
print(len(urls))
#print (urls)
#Translate to xml.
#We can add speak context later
root = ET.Element('AIMind')
rroot = ET.SubElement(root, 'Root')
rroot.attrib["id"] = "0"
features = ET.SubElement(root, 'Features')
#Fill in the features
for url in urls:
feature = ET.SubElement(features, 'Feature')
feature.attrib["data"] = url
feature.attrib["zh-data"] = ""
feature.attrib["id"] = str(urls.index(url)+1)
feature.attrib["uri"] = ""
neighbors = ET.SubElement(feature, 'neighbors')
#Find the neighbor in the dict.
if url in read_dictionary.keys():
for tags,sequence in read_dictionary[url].items():
def TC_pafCCDSYNCHRONIZE(root,
relativeTime,
CCDSEL,
NCCD,
TEXPIOFS,
Timeline_settings,
comment=""):
"Note: CCDSYNCHRONIZE takes one TEXPIMS cycle to execute."
if not (_Globals.latestRelativeTime <= relativeTime <=
Timeline_settings["duration"]):
Logger.error(
"Invalid argument: negative relativeTime, decreasing relativeTime, exceeding timeline duration"
)
raise ValueError
if not (3 <= CCDSEL <= 127 and CCDSEL not in [4, 8, 16, 32, 64]
and type(CCDSEL) == int):
Logger.error("Invalid argument: CCDSEL")
raise ValueError
if not (2 <= NCCD <= 7 and NCCD == bin(CCDSEL).count("1")
and type(NCCD) == int):
Logger.error(
"Invalid argument: More than 7 CCDs chosen (or less than 2) or NCCD does not coincide with CCDSEL"
)
raise ValueError
if not (len(TEXPIOFS) == NCCD):
Logger.error(
"Invalid argument: Number of CCDs (NCCD) does not coincide with the number of time-offsets (TEXPIOFS)."
)
raise ValueError
for TEXPIOFS_value in TEXPIOFS:
if not (0 <= TEXPIOFS_value <= 12000):
Logger.error(
"Invalid argument: 0 > TEXPIOFS_value, TEXPIOFS_value > 12000")
raise ValueError
Logger.debug("CCDSEL: " + str(CCDSEL))
Logger.debug("NCCD: " + str(NCCD))
Logger.debug("TEXPIOFS: " + str(TEXPIOFS))
etree.SubElement(root[1], "command", mnemonic="TC_pafCCDSYNCHRONIZE")
etree.SubElement(root[1][len(root[1]) - 1], "relativeTime")
root[1][len(root[1]) - 1][0].text = str(int(relativeTime))
etree.SubElement(root[1][len(root[1]) - 1], "comment")
root[1][len(root[1]) - 1][1].text = comment
etree.SubElement(root[1][len(root[1]) - 1], "tcArguments")
etree.SubElement(root[1][len(root[1]) - 1][2],
"tcArgument",
mnemonic="CCDSEL")
root[1][len(root[1]) - 1][2][0].text = str(CCDSEL)
etree.SubElement(root[1][len(root[1]) - 1][2],
"tcArgument",
mnemonic="NCCD")
root[1][len(root[1]) - 1][2][1].text = str(NCCD)
Leading_CCD_selected = False
x = 2
for TimeOffset in TEXPIOFS:
if not (0 <= TimeOffset <= 12000 and TimeOffset / 10 == round(
TimeOffset / 10, 0) and type(TimeOffset) == int):
Logger.error("Invalid argument: TEXPIOFS")
raise ValueError
if TimeOffset == 0:
Leading_CCD_selected = True
etree.SubElement(root[1][len(root[1]) - 1][2],
"tcArgument",
mnemonic="TEXPIOFS")
root[1][len(root[1]) - 1][2][x].text = str(TimeOffset)
x = x + 1
if not (Leading_CCD_selected == True):
Logger.error(
"Invalid argument: Any TEXPIOFS not set to 0 -> No leading CCD selected"
)
raise ValueError
incremented_time = (relativeTime + Timeline_settings["CMD_separation"] +
Timeline_settings["CCDSYNC_Waittime"])
_Globals.latestRelativeTime = relativeTime
return incremented_time
def encode_caption_object(cls, obj):
ann_elem = cls.encode_annotation_base(obj)
ET.SubElement(ann_elem, 'caption').text = str(obj.caption)
return ann_elem
def TC_pafCCDBadColumn(root,
relativeTime,
CCDSEL,
NBC,
BC,
Timeline_settings,
comment=""):
if not (_Globals.latestRelativeTime <= relativeTime <=
Timeline_settings["duration"]):
Logger.error(
"Invalid argument: negative relativeTime, decreasing relativeTime, exceeding timeline duration"
)
raise ValueError
if not (1 <= CCDSEL <= 127 and type(CCDSEL) == int):
Logger.error("Invalid argument: CCDSEL")
raise ValueError
if not (0 <= NBC <= 63 and type(NBC) == int):
Logger.error(
"Invalid argument: More than 63 BadColumns chosen (or less than 0)"
)
raise ValueError
if not (len(BC) == NBC):
Logger.error(
"Invalid argument: Number of BadColumns (NBC) does not coincide with Bad Column (BC)."
)
raise ValueError
etree.SubElement(root[1], "command", mnemonic="TC_pafCCDBadColumn")
etree.SubElement(root[1][len(root[1]) - 1], "relativeTime")
root[1][len(root[1]) - 1][0].text = str(int(relativeTime))
etree.SubElement(root[1][len(root[1]) - 1], "comment")
root[1][len(root[1]) - 1][1].text = comment
etree.SubElement(root[1][len(root[1]) - 1], "tcArguments")
etree.SubElement(root[1][len(root[1]) - 1][2],
"tcArgument",
mnemonic="CCDSEL")
root[1][len(root[1]) - 1][2][0].text = str(CCDSEL)
etree.SubElement(root[1][len(root[1]) - 1][2],
"tcArgument",
mnemonic="NBC")
root[1][len(root[1]) - 1][2][1].text = str(NBC)
x = 2
for BadColumn in BC:
if not (4 <= BadColumn <= 2047 and type(BadColumn) == int):
Logger.error("Invalid argument: BC")
raise ValueError
etree.SubElement(root[1][len(root[1]) - 1][2],
"tcArgument",
mnemonic="BC")
root[1][len(root[1]) - 1][2][x].text = str(BadColumn)
x = x + 1
incremented_time = relativeTime + Timeline_settings["CMD_separation"]
_Globals.latestRelativeTime = relativeTime
return incremented_time
def main():
if len(sys.argv) != 4:
print(
'usage: python gaff2xml.py [path_to_smarts_defs] [path_to_gaff_dat_file] [path_to_output_xml_file]'
)
exit(1)
else:
smarts_def_path = sys.argv[1]
gaff_parm_path = sys.argv[2]
xml_out_path = sys.argv[3]
start_mass = 1
end_mass = 84
start_lj = 7119
end_lj = 7202
start_bond = 86
end_bond = 1014
start_angle = 1015
end_angle = 6330
start_torsion = 6331
end_torsion = 7075
start_improper = 7076
end_improper = 7114
data = []
with open(gaff_parm_path) as f:
for line in f:
data.append(line.strip())
# Create dict with smarts definitions
smarts = {}
smarts_tree = ET.parse(smarts_def_path)
defs = smarts_tree.getroot()
for atype in defs.findall('Definition'):
name = atype.get('name')
iclass = atype.get('class')
idef = atype.get('def')
over = atype.get('overrides')
desc = atype.get('desc')
doi = atype.get('doi')
smarts.update({name: [iclass, idef, over, desc, doi]})
# Extract gaff parameters
mass_parms = {
x.split()[0]: x.split()[1]
for x in data[start_mass:end_mass]
}
lj_parms = {x.split()[0]: (x.split()[1:3]) for x in data[start_lj:end_lj]}
bond_parms = [x for x in data[start_bond:end_bond]]
angle_parms = [x for x in data[start_angle:end_angle]]
torsion_parms = [x for x in data[start_torsion:end_torsion]]
improper_parms = [x for x in data[start_improper:end_improper]]
# Create our force field
root = ET.Element("ForceField")
atomtypes = ET.SubElement(root, 'AtomTypes')
nonbonded = ET.SubElement(root, 'NonbondedForce')
nonbonded.set('coulomb14scale', '0.833333333')
nonbonded.set('lj14scale', '0.5')
for atype in smarts.keys():
atomtype = ET.SubElement(atomtypes, 'Type')
nb_force = ET.SubElement(nonbonded, 'Atom')
atomtype.set('name', atype)
iclass = smarts[atype][0]
atomtype.set('class', iclass)
atomtype.set('element', determine_element(mass_parms[iclass]))
atomtype.set('mass', mass_parms[iclass])
if smarts[atype][1] is not None:
atomtype.set('def', smarts[atype][1])
if smarts[atype][2] is not None:
atomtype.set('overrides', smarts[atype][2])
atomtype.set('desc', smarts[atype][3])
atomtype.set('doi', smarts[atype][4])
nb_force.set('type', atype)
nb_force.set('charge', '0.0')
nb_force.set('sigma', convert_sigma(lj_parms[iclass][0]))
nb_force.set('epsilon', convert_epsilon(lj_parms[iclass][1]))
# Bonds
bond_forces = ET.SubElement(root, 'HarmonicBondForce')
for bond in bond_parms:
bond_force = ET.SubElement(bond_forces, 'Bond')
classes = re.split('\s+-|-|\s+', bond[0:5])
parms = bond[5:24].split()
bond_force.set('class1', classes[0])
bond_force.set('class2', classes[1])
bond_force.set('length', convert_bondlength(parms[1]))
bond_force.set('k', convert_bondk(parms[0]))
# Angles
angle_forces = ET.SubElement(root, 'HarmonicAngleForce')
for angle in angle_parms:
angle_force = ET.SubElement(angle_forces, 'Angle')
classes = re.split('\s+-|-|\s+', angle[0:8])
parms = angle[8:30].split()
angle_force.set('class1', classes[0])
angle_force.set('class2', classes[1])
angle_force.set('class3', classes[2])
angle_force.set('angle', convert_theta(parms[1]))
angle_force.set('k', convert_anglek(parms[0]))
# Proper dihedrals
torsion_forces = ET.SubElement(root, 'PeriodicTorsionForce')
continue_reading = False
for torsion in torsion_parms:
# Amber leap convention...if periodicity < 0 it means it is
# there will follow additional torsional terms for the same set of atoms
# See http://ambermd.org/FileFormats.php#parm.dat
classes = re.split('\s+-|-|\s+', torsion[0:11])
parms = torsion[11:54].split()
if continue_reading == False:
torsion_force = ET.SubElement(torsion_forces, 'Proper')
torsion_ctr = 1
if classes[0].upper() == 'X':
torsion_force.set('class1', '')
else:
torsion_force.set('class1', classes[0])
if classes[1].upper() == 'X':
torsion_force.set('class2', '')
else:
torsion_force.set('class2', classes[1])
if classes[2].upper() == 'X':
torsion_force.set('class3', '')
else:
torsion_force.set('class3', classes[2])
if classes[3].upper() == 'X':
torsion_force.set('class4', '')
else:
torsion_force.set('class4', classes[3])
else:
torsion_ctr += 1
if float(parms[3]) < 0.0:
continue_reading = True
else:
continue_reading = False
name = 'periodicity' + str(torsion_ctr)
torsion_force.set(name, str(int(abs(float(parms[3])))))
name = 'k' + str(torsion_ctr)
torsion_force.set(name, convert_torsionk(parms[1], parms[0]))
name = 'phase' + str(torsion_ctr)
torsion_force.set(name, convert_theta(parms[2]))
# Improper dihedrals
continue_reading = False
for torsion in improper_parms:
classes = re.split('\s+-|-|\s+', torsion[0:11])
parms = torsion[11:54].split()
if continue_reading == False:
torsion_force = ET.SubElement(torsion_forces, 'Improper')
torsion_ctr = 1
if classes[2].upper() == 'X':
torsion_force.set('class1', '')
else:
torsion_force.set('class1', classes[2])
if classes[0].upper() == 'X':
torsion_force.set('class2', '')
else:
torsion_force.set('class2', classes[0])
if classes[1].upper() == 'X':
torsion_force.set('class3', '')
else:
torsion_force.set('class3', classes[1])
if classes[3].upper() == 'X':
torsion_force.set('class4', '')
else:
torsion_force.set('class4', classes[3])
else:
torsion_ctr += 1
if float(parms[2]) < 0.0:
continue_reading = True
else:
continue_reading = False
name = 'periodicity' + str(torsion_ctr)
torsion_force.set(name, str(int(abs(float(parms[2])))))
name = 'k' + str(torsion_ctr)
torsion_force.set(name, convert_improperk(parms[0]))
name = 'phase' + str(torsion_ctr)
torsion_force.set(name, convert_theta(parms[1]))
# Write XML with SMARTS defs
ET.ElementTree(root).write(xml_out_path, pretty_print=True)
def TC_pafCCDBIAS(root,
relativeTime,
CCDSEL,
VGATE,
VSUBST,
VRD,
VOD,
Timeline_settings,
comment=""):
if not (_Globals.latestRelativeTime <= relativeTime <=
Timeline_settings["duration"]):
Logger.error(
"Invalid argument: negative relativeTime, decreasing relativeTime, exceeding timeline duration"
)
raise ValueError
if not (1 <= CCDSEL <= 127 and type(CCDSEL) == int):
Logger.error("Invalid argument: CCDSEL")
raise ValueError
if not (0 <= VGATE <= 255 and 0 <= VSUBST <= 255 and 0 <= VRD <= 255
and 0 <= VOD <= 255 and type(VGATE) == int and type(VSUBST) == int
and type(VRD) == int and type(VOD) == int):
Logger.error(
"Invalid argument: CCDBIAS values are not set as integers, or too high or low"
)
raise ValueError
etree.SubElement(root[1], "command", mnemonic="TC_pafCCDBIAS")
etree.SubElement(root[1][len(root[1]) - 1], "relativeTime")
root[1][len(root[1]) - 1][0].text = str(int(relativeTime))
etree.SubElement(root[1][len(root[1]) - 1], "comment")
root[1][len(root[1]) - 1][1].text = comment
etree.SubElement(root[1][len(root[1]) - 1], "tcArguments")
etree.SubElement(root[1][len(root[1]) - 1][2],
"tcArgument",
mnemonic="CCDSEL")
root[1][len(root[1]) - 1][2][0].text = str(CCDSEL)
etree.SubElement(root[1][len(root[1]) - 1][2],
"tcArgument",
mnemonic="VGATE")
root[1][len(root[1]) - 1][2][1].text = str(VGATE)
etree.SubElement(root[1][len(root[1]) - 1][2],
"tcArgument",
mnemonic="VSUBST")
root[1][len(root[1]) - 1][2][2].text = str(VSUBST)
etree.SubElement(root[1][len(root[1]) - 1][2],
"tcArgument",
mnemonic="VRD")
root[1][len(root[1]) - 1][2][3].text = str(VRD)
etree.SubElement(root[1][len(root[1]) - 1][2],
"tcArgument",
mnemonic="VOD")
root[1][len(root[1]) - 1][2][4].text = str(VOD)
incremented_time = relativeTime + Timeline_settings["CMD_separation"]
_Globals.latestRelativeTime = relativeTime
return incremented_time
def parse_inline_content(self, tree, item):
assert tree.get('contenttype') == TTNITF
body_elt = tree.find('BODY')
abstracts = []
for elt in body_elt.xpath('descendant::INGRESS/*'):
abstracts.append(etree.tostring(elt, encoding='unicode', method='text'))
item['abstract'] = '\n'.join(abstracts)
for byline_elt in body_elt.xpath('.//BYLINE'):
epost = byline_elt.get('EPOST', '')
text = byline_elt.text
parent = byline_elt.getparent()
p_elt = etree.Element('p')
a_elt = etree.SubElement(p_elt, 'a', {'href': epost})
a_elt.text = text
parent.replace(byline_elt, p_elt)
for dat_elt in body_elt.xpath('.//DAT'):
try:
ort = dat_elt.xpath('ORT/text()')[0]
except IndexError:
ort = ''
try:
source = dat_elt.xpath('SOURCE/text()')[0]
except IndexError:
source = ''
parent = dat_elt.getparent()
p_elt = etree.Element('p')
p_elt.text = ort + ' / ' + source
parent.replace(dat_elt, p_elt)
etree.strip_tags(body_elt,
'TEXT',
'FAKTATEXT',
'BAKGRUNDTEXT',
'INGRESS',
'BRODTEXT')
etree.strip_elements(body_elt, 'BILD', with_tail=False)
for elt in body_elt.iter(tag=etree.Element):
elt.attrib.clear()
tag = elt.tag
if tag in ('BODY', 'p', 'a'):
continue
elif tag == 'RUBRIK':
elt.tag = 'h1'
elif tag == 'P':
elt.tag = 'p'
elif tag == 'CITAT':
elt.tag = 'blockquote'
elif tag == 'MELLIS':
elt.tag = 'h2'
elif tag == 'FRAGA':
elt.tag = 'p'
elif tag == 'SVAR':
elt.tag = 'p'
elif tag == 'UL':
elt.tag = 'ul'
elif tag == 'LI':
elt.tag = 'li'
elif tag == 'TABELL':
elt.tag = 'table'
elif tag == 'TH':
elt.tag = 'th'
elif tag == 'TR':
elt.tag = 'tr'
elif tag == 'TD':
elt.tag = 'td'
else:
logger.warning('unknown tag: {tag}'.format(tag=tag))
elt.tag = 'p'
div_elt = etree.Element('div')
div_elt[:] = body_elt[:]
contents = [etree.tostring(e, encoding='unicode', method='html') for e in div_elt]
return {'content': '\n'.join(contents)}
if __name__ == '__main__':
pass
import sys
from sys import exit
try:
from lxml import etree
print("running with lxml.etree")
except ImportError:
print "error loading library lxml"
root = etree.Element("Project")
email = etree.SubElement(root, "email")
email.text = ("*****@*****.**")
password = etree.SubElement(root, "password")
password.text = ("SillyPassword")
locales = etree.SubElement(root, "locales")
language1 = etree.SubElement(locales,'Language',ID="1")
picture = etree.SubElement(language1, "picture")
picture.text = ("C:\Mixed\Upload\BF3.png")
et = etree.ElementTree(root)
et.write(sys.stdout, pretty_print=True)
def _add_body(self, envelope):
return ElementTree.SubElement(envelope, '{%s}Body' % NS_SOAP_ENV)
def _append_node(name, text):
n = etree.SubElement(config, name)
n.text = text
def _add_enum_optimization(self, pull_elem):
max_elem_elem = ElementTree.SubElement(pull_elem,
'{%s}MaxElements' % NS_WSMAN)
max_elem_elem.text = str(self.max_elems)
def create_tree(thing, parent=None, object_names=False):
"""Create an XML etree from a thing.
Arguments:
thing thing to interpret
parent etree.Element to put subtree into
default: create a new Element tree
object_names experimental feature: if True tag names are object
names instead of types
Returns:
etree.Element instance created
"""
try:
grammar = type(thing).grammar
except AttributeError:
if isinstance(thing, list):
grammar = pypeg2.csl(pypeg2.name())
else:
grammar = pypeg2.word
name = type(thing).__name__
if object_names:
try:
name = str(thing.name)
name = name.replace(" ", "_")
except AttributeError:
pass
if parent is None:
me = etree.Element(name)
else:
me = etree.SubElement(parent, name)
for e in pypeg2.attributes(grammar):
if object_names and e.name == "name":
if name != type(thing).__name__:
continue
key, value = e.name, getattr(thing, e.name, None)
if value is not None:
if pypeg2._issubclass(e.thing, (str, int, pypeg2.Literal)) \
or type(e.thing) == pypeg2._RegEx:
me.set(key, str(value))
else:
create_tree(value, me, object_names)
if isinstance(thing, list):
things = thing
elif isinstance(thing, pypeg2.Namespace):
things = thing.values()
else:
things = []
last = None
for t in things:
if type(t) == str:
if last is not None:
last.tail = str(t)
else:
me.text = str(t)
else:
last = create_tree(t, me, object_names)
if isinstance(thing, str):
me.text = str(thing)
return me
def entry_xml_startdate(entry, entryxml):
'''Convert the entry startDate to XML.'''
if entry.not_empty('startDate'):
sub_element = etree.SubElement(entryxml, 'startDate')
sub_element.text = entry['startDate']
def _sign_file(cert, password, request):
minimum = 1
maximum = 99999
signature_id = 'Signature%05d' % random.randint(minimum, maximum)
signed_properties_id = (signature_id + '-SignedProperties%05d') % (
random.randint(minimum, maximum))
key_info_id = 'KeyInfo%05d' % random.randint(minimum, maximum)
reference_id = 'Reference%05d' % random.randint(minimum, maximum)
object_id = 'Object%05d' % random.randint(minimum, maximum)
etsi = 'http://uri.etsi.org/01903/v1.3.2#'
sig_policy_identifier = 'http://www.facturae.es/' \
'politica_de_firma_formato_facturae/' \
'politica_de_firma_formato_facturae_v3_1' \
'.pdf'
sig_policy_hash_value = 'Ohixl6upD6av8N7pEvDABhEL6hM='
root = etree.fromstring(request)
sign = xmlsig.template.create(
c14n_method=xmlsig.constants.TransformInclC14N,
sign_method=xmlsig.constants.TransformRsaSha1,
name=signature_id,
ns="ds")
key_info = xmlsig.template.ensure_key_info(sign, name=key_info_id)
x509_data = xmlsig.template.add_x509_data(key_info)
xmlsig.template.x509_data_add_certificate(x509_data)
xmlsig.template.add_key_value(key_info)
certificate = crypto.load_pkcs12(base64.b64decode(cert), password)
xmlsig.template.add_reference(
sign,
xmlsig.constants.TransformSha1,
uri='#' + signed_properties_id,
uri_type='http://uri.etsi.org/01903#SignedProperties')
xmlsig.template.add_reference(sign,
xmlsig.constants.TransformSha1,
uri='#' + key_info_id)
ref = xmlsig.template.add_reference(sign,
xmlsig.constants.TransformSha1,
name=reference_id,
uri="")
xmlsig.template.add_transform(ref,
xmlsig.constants.TransformEnveloped)
object_node = etree.SubElement(
sign,
etree.QName(xmlsig.constants.DSigNs, 'Object'),
nsmap={'etsi': etsi},
attrib={xmlsig.constants.ID_ATTR: object_id})
qualifying_properties = etree.SubElement(
object_node,
etree.QName(etsi, 'QualifyingProperties'),
attrib={'Target': '#' + signature_id})
signed_properties = etree.SubElement(
qualifying_properties,
etree.QName(etsi, 'SignedProperties'),
attrib={xmlsig.constants.ID_ATTR: signed_properties_id})
signed_signature_properties = etree.SubElement(
signed_properties,
etree.QName(etsi, 'SignedSignatureProperties'))
now = datetime.now().replace(microsecond=0, tzinfo=pytz.utc)
etree.SubElement(signed_signature_properties,
etree.QName(
etsi, 'SigningTime')).text = now.isoformat()
signing_certificate = etree.SubElement(
signed_signature_properties,
etree.QName(etsi, 'SigningCertificate'))
signing_certificate_cert = etree.SubElement(
signing_certificate, etree.QName(etsi, 'Cert'))
cert_digest = etree.SubElement(signing_certificate_cert,
etree.QName(etsi, 'CertDigest'))
etree.SubElement(
cert_digest,
etree.QName(xmlsig.constants.DSigNs, 'DigestMethod'),
attrib={'Algorithm': 'http://www.w3.org/2000/09/xmldsig#sha1'})
hash_cert = hashlib.sha1(
crypto.dump_certificate(crypto.FILETYPE_ASN1,
certificate.get_certificate()))
etree.SubElement(
cert_digest, etree.QName(
xmlsig.constants.DSigNs,
'DigestValue')).text = base64.b64encode(hash_cert.digest())
issuer_serial = etree.SubElement(signing_certificate_cert,
etree.QName(etsi, 'IssuerSerial'))
etree.SubElement(
issuer_serial,
etree.QName(xmlsig.constants.DSigNs, 'X509IssuerName')
).text = xmlsig.utils.get_rdns_name(
certificate.get_certificate().to_cryptography().issuer.rdns)
etree.SubElement(
issuer_serial,
etree.QName(
xmlsig.constants.DSigNs, 'X509SerialNumber')).text = str(
certificate.get_certificate().get_serial_number())
signature_policy_identifier = etree.SubElement(
signed_signature_properties,
etree.QName(etsi, 'SignaturePolicyIdentifier'))
signature_policy_id = etree.SubElement(
signature_policy_identifier,
etree.QName(etsi, 'SignaturePolicyId'))
sig_policy_id = etree.SubElement(signature_policy_id,
etree.QName(etsi, 'SigPolicyId'))
etree.SubElement(sig_policy_id, etree.QName(
etsi, 'Identifier')).text = sig_policy_identifier
etree.SubElement(sig_policy_id, etree.QName(
etsi, 'Description')).text = "Política de Firma FacturaE v3.1"
sig_policy_hash = etree.SubElement(
signature_policy_id, etree.QName(etsi, 'SigPolicyHash'))
etree.SubElement(
sig_policy_hash,
etree.QName(xmlsig.constants.DSigNs, 'DigestMethod'),
attrib={'Algorithm': 'http://www.w3.org/2000/09/xmldsig#sha1'})
hash_value = sig_policy_hash_value
etree.SubElement(
sig_policy_hash,
etree.QName(xmlsig.constants.DSigNs,
'DigestValue')).text = hash_value
signer_role = etree.SubElement(signed_signature_properties,
etree.QName(etsi, 'SignerRole'))
claimed_roles = etree.SubElement(signer_role,
etree.QName(etsi, 'ClaimedRoles'))
etree.SubElement(claimed_roles,
etree.QName(etsi,
'ClaimedRole')).text = 'supplier'
signed_data_object_properties = etree.SubElement(
signed_properties,
etree.QName(etsi, 'SignedDataObjectProperties'))
data_object_format = etree.SubElement(
signed_data_object_properties,
etree.QName(etsi, 'DataObjectFormat'),
attrib={'ObjectReference': '#' + reference_id})
etree.SubElement(data_object_format,
etree.QName(etsi, 'Description')).text = 'Factura'
etree.SubElement(data_object_format,
etree.QName(etsi, 'MimeType')).text = 'text/xml'
ctx = xmlsig.SignatureContext()
key = crypto.load_pkcs12(base64.b64decode(cert), password)
ctx.x509 = key.get_certificate().to_cryptography()
ctx.public_key = ctx.x509.public_key()
ctx.private_key = key.get_privatekey().to_cryptography_key()
root.append(sign)
ctx.sign(sign)
return etree.tostring(root, xml_declaration=True, encoding='UTF-8')