def load(self):
'''
Loads the binary data from the raw image. Tries to load .nrrd
'''
if self.loaded:
raise Exception("This fish has already been loaded. Check to make sure you are not calling Fish.load() more than once.")
t=type(self.filename)
if t==type(str()):
bindata=main.loadFile(self.filename)
self.fileextension=main.parseExtension(self.filename)
else:
#TODO Make it so that it can handle more than one file
raise Exception("I can't handle more than one file yet")
#Get header data
if ".nrrd" in self.fileextension or ".nhdr" in self.fileextension:
self.hdrinfo,raw=splitNrrdData(self.bindata)
self.axes=[i for i in reversed(self.hdrinfo["dsize"])]
elif ".raw" in self.fileextension:
raw=bindata
if len(self.axes)==0:
self.axes=main.getDimFromFile(self.filename)
assert len(self.axes!=0), "Could not parse the The number of axes must be greater than zero."
lineardata=main.unpacker2(raw, offset=0)
self.shapegrid=np.reshape(lineardata, self.axes, order)
self.loaded=True
def setDimensions(self, axes=[0]):
'''
Sets the fish dimensions from any of a number of data sources
'''
if len(axes)>0 and axes[0]>0:
self.data.reshape(axes.reverse())
else:
self.fileextension=main.parseExtension(self.filename)
if self.fileextension==".nrrd" or self.fileextension ==".nhdr":
#Overwrite axes input
#TODO See if this is necessary as time goes on.
self.axes=self.hdrinfo["dsize"]
elif "raw" in self.fileextension:
dims= main.getDimFromFile(self.filename)
if dims is not None:
self.axes=dims
self.data.reshape(dims)