Esempio n. 1
0
for d in range(len(anatomy_list)):
    meanPolyData_d = meanPolyDataList[d]
    nDataList.append(meanPolyData_d.GetNumberOfPoints())

    if d > 0:
        nDimStartlist.append(nDataList[d - 1] + nDimStartlist[d - 1])

# Manifold Dimension
nManDim = CMRepDataList[0].nDim
nData = len(CMRepDataList)

base = manifolds.cmrep(nManDim)
base.Read("CMRep_LinearizedGeodesicRegression_Complex_CTRL_base.rpt")

tangent = manifolds.cmrep_tVec(nManDim)
tangent.Read("CMRep_LinearizedGeodesicRegression_Complex_CTRL_tangent.tVec")

t0 = 20
tN = 80
nTimePt = 30
est_time_list_i = []
est_rad_pt_list_i = []

regression_output_folder_path = '/media/shong/IntHard1/4DAnalysis/IPMI2018/GeodesicRegressionResults/CMRep_CTRL_Complex_NewCode_Linearized/'

for a in range(len(anatomy_list)):
    anatomy = anatomy_list[a]

    inFileName = 'CMRep_Regression_CTRL_Comlex_' + anatomy + '_' + str(
        0) + '.vtk'
Esempio n. 2
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	R2_posArr_t_vtk.SetNumberOfValues( polyData_t.GetNumberOfPoints() )
	R2_posArr_t_vtk.SetName( 'R2_pos' )

	R2_radArr_t_vtk = vtk.vtkFloatArray()  
	R2_radArr_t_vtk.SetNumberOfValues( polyData_t.GetNumberOfPoints() )
	R2_radArr_t_vtk.SetName( 'R2_rad' )

	RMSE_posArr_t_vtk = vtk.vtkFloatArray()  
	RMSE_posArr_t_vtk.SetNumberOfValues( polyData_t.GetNumberOfPoints() )
	RMSE_posArr_t_vtk.SetName( 'RMSE_pos' )

	RMSE_radArr_t_vtk = vtk.vtkFloatArray()  
	RMSE_radArr_t_vtk.SetNumberOfValues( polyData_t.GetNumberOfPoints() )
	RMSE_radArr_t_vtk.SetName( 'RMSE_rad' )

	tVec_t = manifolds.cmrep_tVec( nManDim )

	for k in range( nManDim ):
		# Position 
		for d in range( 3 ):
			tVec_t.tVector[ k ][ 0 ].tVector[ d ] = tangent.tVector[ k ][ 0 ].tVector[ d ] * time_pt

		# Radius
			tVec_t.tVector[ k ][ 1 ].tVector[ 0 ] = tangent.tVector[ k ][ 1 ].tVector[ 0 ] * time_pt

	est_cmrep_t = base.ExponentialMap( tVec_t )

	for k in range( nManDim ):
		polyData_t.GetPoints().SetPoint( k, est_cmrep_t.pt[ k ][ 0 ].pt )
		radiusArr_t_vtk.SetValue( k, est_cmrep_t.pt[ k ][ 1 ].pt[ 0 ] )
		R2_posArr_t_vtk.SetValue( k, R2_atom[ 0 ][ k ] )
Esempio n. 3
0
print( pos_real_tVec_r.nDim )
print( pos_real_tVec_r.Type )

pos_real_pt = manifolds.pos_real( 1 )
pos_real_pt.SetPoint( 4.0 )
pos_real_pt.Write( "pos_real.rpt" )

pos_real_pt_r = manifolds.pos_real( 1 )
pos_real_pt_r.Read( "pos_real.rpt" )

print( pos_real_pt_r.pt )
print( pos_real_pt_r.nDim ) 
print( pos_real_pt_r.Type )

# CMRep
cmrep_tVec = manifolds.cmrep_tVec( 2 )
cmrep_tVec.SetTangentVector( [ [ eucl_tVec, pos_real_tVec ], [ eucl_tVec, pos_real_tVec ] ] ) 

cmrep_pt = manifolds.cmrep( 2 )
cmrep_pt.SetPoint( [ [ eucl_pt, pos_real_pt ], [ eucl_pt, pos_real_pt ] ] )
cmrep_pt.UpdateMeanRadius()

cmrep_tVec.SetMeanRadius( cmrep_pt.meanRadius )


cmrep_tVec.Write( "cmrep_tVec.tvec" )
cmrep_pt.Write( "cmrep.rpt" )

cmrep_tVec_r = manifolds.cmrep_tVec( 2 )
cmrep_tVec_r.Read( "cmrep_tVec.tvec" )