class Analyze(wx.Panel):
def __init__(self,parent):
wx.Panel.__init__(self, parent)
self.figure = Figure()
self.canv = FigCanvas(self,-1, self.figure)
self.toolbar = NavigationToolbar(self.canv)
self.toolbar.Hide()
self.home = wx.lib.buttons.GenBitmapButton(self, -1, wx.Bitmap('icons/home.jpg'))
self.Bind(wx.EVT_BUTTON, self.Home, self.home)
self.pan = wx.lib.buttons.GenBitmapButton(self, -1, wx.Bitmap('icons/pan.png'))
self.Bind(wx.EVT_BUTTON, self.Pan, self.pan)
self.zoom = wx.lib.buttons.GenBitmapButton(self, -1, wx.Bitmap('icons/zoom.jpg'))
self.Bind(wx.EVT_BUTTON, self.Zoom, self.zoom)
self.plot = wx.lib.buttons.GenBitmapButton(self, -1, wx.Bitmap('icons/plot.png'))
self.Bind(wx.EVT_BUTTON, self.Plot_a, self.plot)
self.process = wx.lib.buttons.GenBitmapButton(self, -1, wx.Bitmap('icons/processing.png'))
self.Bind(wx.EVT_BUTTON, self.Processing, self.process)
self.hbox1 = wx.BoxSizer(wx.HORIZONTAL)
self.hbox1.Add(self.home, border=5, flag=wx.ALL | wx.ALIGN_CENTER_VERTICAL)
self.hbox1.Add(self.pan, border=5, flag=wx.ALL | wx.ALIGN_CENTER_VERTICAL)
self.hbox1.Add(self.zoom, border=5, flag=wx.ALL | wx.ALIGN_CENTER_VERTICAL)
self.hbox1.Add(self.plot, border=5, flag=wx.ALL | wx.ALIGN_CENTER_VERTICAL)
self.hbox1.Add(self.process, border=5, flag=wx.ALL | wx.ALIGN_CENTER_VERTICAL)
self.vbox = wx.BoxSizer(wx.VERTICAL)
self.vbox.Add(self.canv, 1, flag=wx.LEFT | wx.TOP | wx.GROW)
self.vbox.Add(self.hbox1, 0, flag=wx.ALIGN_CENTER | wx.TOP)
self.SetSizer(self.vbox)
def Home(self,e):
self.toolbar.home()
def Pan(self,e):
self.toolbar.pan()
def Zoom(self,e):
self.toolbar.zoom()
def Plot_a(self,e):
data = [np.random.random() for i in range(25)]
ax = self.figure.add_subplot(111)
ax.hold(False)
ax.plot(data, '*-')
self.canv.draw()
def Processing(self,e):
print "run process"
class InterpretationEditorFrame(wx.Frame):
#########################Init Funcions#############################
def __init__(self,parent):
"""Constructor"""
#set parent and resolution
self.parent = parent
self.GUI_RESOLUTION=self.parent.GUI_RESOLUTION
#call init of super class
default_style = wx.MINIMIZE_BOX | wx.MAXIMIZE_BOX | wx.RESIZE_BORDER | wx.SYSTEM_MENU | wx.CAPTION | wx.CLOSE_BOX | wx.CLIP_CHILDREN | wx.NO_FULL_REPAINT_ON_RESIZE | wx.WS_EX_CONTEXTHELP | wx.FRAME_EX_CONTEXTHELP
wx.Frame.__init__(self, self.parent, title="Interpretation Editor version:%s"%CURRENT_VERSION,style=default_style, size=(675*self.GUI_RESOLUTION,425*self.GUI_RESOLUTION))
self.Bind(wx.EVT_CLOSE, self.on_close_edit_window)
#setup wx help provider class to give help messages
provider = wx.SimpleHelpProvider()
wx.HelpProvider.Set(provider)
self.helper = wx.ContextHelp(doNow=False)
#make the Panel
self.panel = wx.Panel(self,-1,size=(700*self.GUI_RESOLUTION,450*self.GUI_RESOLUTION))
#set icon
self.SetIcon(self.parent.icon)
# icon = wx.Icon()
# icon_path = os.path.join(IMG_DIRECTORY, 'PmagPy.ico')
# if os.path.exists(icon_path):
# icon.CopyFromBitmap(wx.Bitmap(icon_path), wx.BITMAP_TYPE_ANY)
# self.SetIcon(icon)
self.specimens_list=self.parent.specimens
self.current_fit_index = None
self.search_query = ""
self.font_type = self.parent.font_type
#build UI and menu
self.init_UI()
self.create_menu()
#update with stuff
self.on_select_level_name(None)
def init_UI(self):
"""
Builds User Interface for the interpretation Editor
"""
#set fonts
FONT_WEIGHT=1
if sys.platform.startswith('win'): FONT_WEIGHT=-1
font1 = wx.Font(9+FONT_WEIGHT, wx.SWISS, wx.NORMAL, wx.NORMAL, False, self.font_type)
font2 = wx.Font(12+FONT_WEIGHT, wx.SWISS, wx.NORMAL, wx.NORMAL, False, self.font_type)
#if you're on mac do some funny stuff to make it look okay
is_mac = False
if sys.platform.startswith("darwin"):
is_mac = True
self.search_bar = wx.SearchCtrl(self.panel, size=(350*self.GUI_RESOLUTION,25) ,style=wx.TE_PROCESS_ENTER | wx.TE_PROCESS_TAB | wx.TE_NOHIDESEL)
self.Bind(wx.EVT_TEXT_ENTER, self.on_enter_search_bar,self.search_bar)
self.Bind(wx.EVT_SEARCHCTRL_SEARCH_BTN, self.on_enter_search_bar,self.search_bar)
self.search_bar.SetHelpText(dieh.search_help)
# self.Bind(wx.EVT_TEXT, self.on_complete_search_bar,self.search_bar)
#build logger
self.logger = wx.ListCtrl(self.panel, -1, size=(100*self.GUI_RESOLUTION,475*self.GUI_RESOLUTION),style=wx.LC_REPORT)
self.logger.SetFont(font1)
self.logger.InsertColumn(0, 'specimen',width=75*self.GUI_RESOLUTION)
self.logger.InsertColumn(1, 'fit name',width=65*self.GUI_RESOLUTION)
self.logger.InsertColumn(2, 'max',width=55*self.GUI_RESOLUTION)
self.logger.InsertColumn(3, 'min',width=55*self.GUI_RESOLUTION)
self.logger.InsertColumn(4, 'n',width=25*self.GUI_RESOLUTION)
self.logger.InsertColumn(5, 'fit type',width=60*self.GUI_RESOLUTION)
self.logger.InsertColumn(6, 'dec',width=45*self.GUI_RESOLUTION)
self.logger.InsertColumn(7, 'inc',width=45*self.GUI_RESOLUTION)
self.logger.InsertColumn(8, 'mad',width=45*self.GUI_RESOLUTION)
self.logger.InsertColumn(9, 'dang',width=45*self.GUI_RESOLUTION)
self.logger.InsertColumn(10, 'a95',width=45*self.GUI_RESOLUTION)
self.logger.InsertColumn(11, 'K',width=45*self.GUI_RESOLUTION)
self.logger.InsertColumn(12, 'R',width=45*self.GUI_RESOLUTION)
self.Bind(wx.EVT_LIST_ITEM_ACTIVATED, self.OnClick_listctrl, self.logger)
self.Bind(wx.EVT_LIST_ITEM_RIGHT_CLICK,self.OnRightClickListctrl,self.logger)
self.logger.SetHelpText(dieh.logger_help)
#set fit attributes boxsizers
self.display_sizer = wx.StaticBoxSizer(wx.StaticBox(self.panel, wx.ID_ANY, "display options"), wx.HORIZONTAL)
self.name_sizer = wx.StaticBoxSizer(wx.StaticBox(self.panel, wx.ID_ANY, "fit name/color"), wx.VERTICAL)
self.bounds_sizer = wx.StaticBoxSizer(wx.StaticBox(self.panel, wx.ID_ANY, "fit bounds"), wx.VERTICAL)
self.buttons_sizer = wx.StaticBoxSizer(wx.StaticBox(self.panel, wx.ID_ANY), wx.VERTICAL)
#logger display selection box
UPPER_LEVEL = self.parent.level_box.GetValue()
if UPPER_LEVEL=='sample':
name_choices = self.parent.samples
if UPPER_LEVEL=='site':
name_choices = self.parent.sites
if UPPER_LEVEL=='location':
name_choices = self.parent.locations
if UPPER_LEVEL=='study':
name_choices = ['this study']
self.level_box = wx.ComboBox(self.panel, -1, size=(110*self.GUI_RESOLUTION, 25), value=UPPER_LEVEL, choices=['sample','site','location','study'], style=wx.CB_DROPDOWN|wx.TE_READONLY)
self.Bind(wx.EVT_COMBOBOX, self.on_select_high_level,self.level_box)
self.level_box.SetHelpText(dieh.level_box_help)
self.level_names = wx.ComboBox(self.panel, -1, size=(110*self.GUI_RESOLUTION, 25), value=self.parent.level_names.GetValue(), choices=name_choices, style=wx.CB_DROPDOWN|wx.TE_READONLY)
self.Bind(wx.EVT_COMBOBOX, self.on_select_level_name,self.level_names)
self.level_names.SetHelpText(dieh.level_names_help)
#mean type and plot display boxes
self.mean_type_box = wx.ComboBox(self.panel, -1, size=(110*self.GUI_RESOLUTION, 25), value=self.parent.mean_type_box.GetValue(), choices=['Fisher','Fisher by polarity','None'], style=wx.CB_DROPDOWN|wx.TE_READONLY, name="high_type")
self.Bind(wx.EVT_COMBOBOX, self.on_select_mean_type_box,self.mean_type_box)
self.mean_type_box.SetHelpText(dieh.mean_type_help)
self.mean_fit_box = wx.ComboBox(self.panel, -1, size=(110*self.GUI_RESOLUTION, 25), value=self.parent.mean_fit, choices=(['None','All'] + self.parent.fit_list), style=wx.CB_DROPDOWN|wx.TE_READONLY, name="high_type")
self.Bind(wx.EVT_COMBOBOX, self.on_select_mean_fit_box,self.mean_fit_box)
self.mean_fit_box.SetHelpText(dieh.mean_fit_help)
#show box
if UPPER_LEVEL == "study" or UPPER_LEVEL == "location":
show_box_choices = ['specimens','samples','sites']
if UPPER_LEVEL == "site":
show_box_choices = ['specimens','samples']
if UPPER_LEVEL == "sample":
show_box_choices = ['specimens']
self.show_box = wx.ComboBox(self.panel, -1, size=(110*self.GUI_RESOLUTION, 25), value='specimens', choices=show_box_choices, style=wx.CB_DROPDOWN|wx.TE_READONLY,name="high_elements")
self.Bind(wx.EVT_COMBOBOX, self.on_select_show_box,self.show_box)
self.show_box.SetHelpText(dieh.show_help)
#coordinates box
self.coordinates_box = wx.ComboBox(self.panel, -1, size=(110*self.GUI_RESOLUTION, 25), choices=self.parent.coordinate_list, value=self.parent.coordinates_box.GetValue(), style=wx.CB_DROPDOWN|wx.TE_READONLY, name="coordinates")
self.Bind(wx.EVT_COMBOBOX, self.on_select_coordinates,self.coordinates_box)
self.coordinates_box.SetHelpText(dieh.coordinates_box_help)
#bounds select boxes
self.tmin_box = wx.ComboBox(self.panel, -1, size=(80*self.GUI_RESOLUTION, 25), choices=[''] + self.parent.T_list, style=wx.CB_DROPDOWN|wx.TE_READONLY, name="lower bound")
self.tmin_box.SetHelpText(dieh.tmin_box_help)
self.tmax_box = wx.ComboBox(self.panel, -1, size=(80*self.GUI_RESOLUTION, 25), choices=[''] + self.parent.T_list, style=wx.CB_DROPDOWN|wx.TE_READONLY, name="upper bound")
self.tmax_box.SetHelpText(dieh.tmax_box_help)
#color box
self.color_dict = self.parent.color_dict
self.color_box = wx.ComboBox(self.panel, -1, size=(80*self.GUI_RESOLUTION, 25), choices=[''] + sorted(self.color_dict.keys()), style=wx.CB_DROPDOWN|wx.TE_PROCESS_ENTER, name="color")
self.Bind(wx.EVT_TEXT_ENTER, self.add_new_color, self.color_box)
self.color_box.SetHelpText(dieh.color_box_help)
#name box
self.name_box = wx.TextCtrl(self.panel, -1, size=(80*self.GUI_RESOLUTION, 25), name="name")
self.name_box.SetHelpText(dieh.name_box_help)
#more mac stuff
h_size_buttons,button_spacing = 25,5.5
if is_mac: h_size_buttons,button_spacing = 18,0.
#buttons
self.add_all_button = wx.Button(self.panel, id=-1, label='add new fit to all specimens',size=(160*self.GUI_RESOLUTION,h_size_buttons))
self.add_all_button.SetFont(font1)
self.Bind(wx.EVT_BUTTON, self.add_fit_to_all, self.add_all_button)
self.add_all_button.SetHelpText(dieh.add_all_help)
self.add_fit_button = wx.Button(self.panel, id=-1, label='add fit to highlighted specimens',size=(160*self.GUI_RESOLUTION,h_size_buttons))
self.add_fit_button.SetFont(font1)
self.Bind(wx.EVT_BUTTON, self.add_highlighted_fits, self.add_fit_button)
self.add_fit_button.SetHelpText(dieh.add_fit_btn_help)
self.delete_fit_button = wx.Button(self.panel, id=-1, label='delete highlighted fits',size=(160*self.GUI_RESOLUTION,h_size_buttons))
self.delete_fit_button.SetFont(font1)
self.Bind(wx.EVT_BUTTON, self.delete_highlighted_fits, self.delete_fit_button)
self.delete_fit_button.SetHelpText(dieh.delete_fit_btn_help)
self.apply_changes_button = wx.Button(self.panel, id=-1, label='apply changes to highlighted fits',size=(160*self.GUI_RESOLUTION,h_size_buttons))
self.apply_changes_button.SetFont(font1)
self.Bind(wx.EVT_BUTTON, self.apply_changes, self.apply_changes_button)
self.apply_changes_button.SetHelpText(dieh.apply_changes_help)
#windows
display_window_0 = wx.GridSizer(2, 1, 10*self.GUI_RESOLUTION, 19*self.GUI_RESOLUTION)
display_window_1 = wx.GridSizer(2, 1, 10*self.GUI_RESOLUTION, 19*self.GUI_RESOLUTION)
display_window_2 = wx.GridSizer(2, 1, 10*self.GUI_RESOLUTION, 19*self.GUI_RESOLUTION)
name_window = wx.GridSizer(2, 1, 10*self.GUI_RESOLUTION, 19*self.GUI_RESOLUTION)
bounds_window = wx.GridSizer(2, 1, 10*self.GUI_RESOLUTION, 19*self.GUI_RESOLUTION)
buttons1_window = wx.GridSizer(4, 1, 5*self.GUI_RESOLUTION, 19*self.GUI_RESOLUTION)
display_window_0.AddMany( [(self.coordinates_box, wx.ALIGN_LEFT),
(self.show_box, wx.ALIGN_LEFT)] )
display_window_1.AddMany( [(self.level_box, wx.ALIGN_LEFT),
(self.level_names, wx.ALIGN_LEFT)] )
display_window_2.AddMany( [(self.mean_type_box, wx.ALIGN_LEFT),
(self.mean_fit_box, wx.ALIGN_LEFT)] )
name_window.AddMany( [(self.name_box, wx.ALIGN_LEFT),
(self.color_box, wx.ALIGN_LEFT)] )
bounds_window.AddMany( [(self.tmin_box, wx.ALIGN_LEFT),
(self.tmax_box, wx.ALIGN_LEFT)] )
buttons1_window.AddMany( [(self.add_fit_button, wx.ALL|wx.ALIGN_CENTER|wx.SHAPED, 0),
(self.add_all_button, wx.ALL|wx.ALIGN_CENTER|wx.SHAPED, 0),
(self.delete_fit_button, wx.ALL|wx.ALIGN_CENTER|wx.SHAPED, 0),
(self.apply_changes_button, wx.ALL|wx.ALIGN_CENTER|wx.SHAPED, 0)])
self.display_sizer.Add(display_window_0, 1, wx.TOP|wx.EXPAND, 8)
self.display_sizer.Add(display_window_1, 1, wx.TOP | wx.LEFT|wx.EXPAND, 8)
self.display_sizer.Add(display_window_2, 1, wx.TOP | wx.LEFT|wx.EXPAND, 8)
self.name_sizer.Add(name_window, 1, wx.TOP, 5.5)
self.bounds_sizer.Add(bounds_window, 1, wx.TOP, 5.5)
self.buttons_sizer.Add(buttons1_window, 1, wx.TOP, 0)
#duplicate high levels plot
self.fig = Figure((2.5*self.GUI_RESOLUTION, 2.5*self.GUI_RESOLUTION), dpi=100)
self.canvas = FigCanvas(self.panel, -1, self.fig, )
self.toolbar = NavigationToolbar(self.canvas)
self.toolbar.Hide()
self.toolbar.zoom()
self.high_EA_setting = "Zoom"
self.canvas.Bind(wx.EVT_LEFT_DCLICK,self.on_equalarea_high_select)
self.canvas.Bind(wx.EVT_MOTION,self.on_change_high_mouse_cursor)
self.canvas.Bind(wx.EVT_MIDDLE_DOWN,self.home_high_equalarea)
self.canvas.Bind(wx.EVT_RIGHT_DOWN,self.pan_zoom_high_equalarea)
self.canvas.SetHelpText(dieh.eqarea_help)
self.eqarea = self.fig.add_subplot(111)
draw_net(self.eqarea)
#Higher Level Statistics Box
self.stats_sizer = wx.StaticBoxSizer( wx.StaticBox( self.panel, wx.ID_ANY,"mean statistics" ), wx.VERTICAL)
for parameter in ['mean_type','dec','inc','alpha95','K','R','n_lines','n_planes']:
COMMAND="self.%s_window=wx.TextCtrl(self.panel,style=wx.TE_CENTER|wx.TE_READONLY,size=(100*self.GUI_RESOLUTION,25))"%parameter
exec(COMMAND)
COMMAND="self.%s_window.SetBackgroundColour(wx.WHITE)"%parameter
exec(COMMAND)
COMMAND="self.%s_window.SetFont(font2)"%parameter
exec(COMMAND)
COMMAND="self.%s_outer_window = wx.GridSizer(1,2,5*self.GUI_RESOLUTION,15*self.GUI_RESOLUTION)"%parameter
exec(COMMAND)
COMMAND="""self.%s_outer_window.AddMany([
(wx.StaticText(self.panel,label='%s',style=wx.TE_CENTER),wx.EXPAND),
(self.%s_window, wx.EXPAND)])"""%(parameter,parameter,parameter)
exec(COMMAND)
COMMAND="self.stats_sizer.Add(self.%s_outer_window, 1, wx.ALIGN_LEFT|wx.EXPAND, 0)"%parameter
exec(COMMAND)
self.switch_stats_button = wx.SpinButton(self.panel, id=wx.ID_ANY, style=wx.SP_HORIZONTAL|wx.SP_ARROW_KEYS|wx.SP_WRAP, name="change stats")
self.Bind(wx.EVT_SPIN, self.on_select_stats_button,self.switch_stats_button)
self.switch_stats_button.SetHelpText(dieh.switch_stats_btn_help)
#construct panel
hbox0 = wx.BoxSizer(wx.HORIZONTAL)
hbox0.Add(self.name_sizer,flag=wx.ALIGN_TOP|wx.EXPAND,border=8)
hbox0.Add(self.bounds_sizer,flag=wx.ALIGN_TOP|wx.EXPAND,border=8)
vbox0 = wx.BoxSizer(wx.VERTICAL)
vbox0.Add(hbox0,flag=wx.ALIGN_TOP,border=8)
vbox0.Add(self.buttons_sizer,flag=wx.ALIGN_TOP,border=8)
hbox1 = wx.BoxSizer(wx.HORIZONTAL)
hbox1.Add(vbox0,flag=wx.ALIGN_TOP,border=8)
hbox1.Add(self.stats_sizer,flag=wx.ALIGN_TOP,border=8)
hbox1.Add(self.switch_stats_button,flag=wx.ALIGN_TOP|wx.EXPAND,border=8)
vbox1 = wx.BoxSizer(wx.VERTICAL)
vbox1.Add(self.display_sizer,flag=wx.ALIGN_TOP,border=8)
vbox1.Add(hbox1,flag=wx.ALIGN_TOP,border=8)
vbox1.Add(self.canvas,proportion=1,flag=wx.ALIGN_CENTER_HORIZONTAL | wx.ALIGN_CENTER_VERTICAL | wx.EXPAND,border=8)
vbox2 = wx.BoxSizer(wx.VERTICAL)
vbox2.Add(self.search_bar,proportion=.5,flag=wx.ALIGN_LEFT | wx.ALIGN_BOTTOM | wx.EXPAND, border=8)
vbox2.Add(self.logger,proportion=1,flag=wx.ALIGN_LEFT|wx.EXPAND,border=8)
hbox2 = wx.BoxSizer(wx.HORIZONTAL)
hbox2.Add(vbox2,proportion=1,flag=wx.ALIGN_LEFT|wx.EXPAND)
hbox2.Add(vbox1,flag=wx.ALIGN_TOP|wx.EXPAND)
self.panel.SetSizerAndFit(hbox2)
hbox2.Fit(self)
def create_menu(self):
menubar = wx.MenuBar()
#--------------------------------------------------------------------
menu_file = wx.Menu()
m_change_WD = menu_file.Append(-1, "Change Working Directory\tCtrl-W","")
self.Bind(wx.EVT_MENU, self.parent.on_menu_change_working_directory, m_change_WD)
m_make_MagIC_results_tables = menu_file.Append(-1, "&Save MagIC pmag tables\tCtrl-Shift-S", "")
self.Bind(wx.EVT_MENU, self.parent.on_menu_make_MagIC_results_tables, m_make_MagIC_results_tables)
submenu_save_plots = wx.Menu()
m_save_high_level = submenu_save_plots.Append(-1, "&Save high level plot", "")
self.Bind(wx.EVT_MENU, self.parent.on_save_high_level, m_save_high_level,"Eq")
m_new_sub_plots = menu_file.AppendSubMenu(submenu_save_plots, "&Save plot")
menu_file.AppendSeparator()
m_exit = menu_file.Append(-1, "E&xit\tCtrl-Q", "Exit")
self.Bind(wx.EVT_MENU, self.on_close_edit_window, m_exit)
#--------------------------------------------------------------------
menu_Analysis = wx.Menu()
submenu_criteria = wx.Menu()
m_change_criteria_file = submenu_criteria.Append(-1, "&Change acceptance criteria", "")
self.Bind(wx.EVT_MENU, self.parent.on_menu_change_criteria, m_change_criteria_file)
m_import_criteria_file = submenu_criteria.Append(-1, "&Import criteria file", "")
self.Bind(wx.EVT_MENU, self.parent.on_menu_criteria_file, m_import_criteria_file)
m_new_sub = menu_Analysis.AppendSubMenu(submenu_criteria, "Acceptance criteria")
m_import_LSQ = menu_Analysis.Append(-1, "&Import Interpretations from LSQ file\tCtrl-L", "")
self.Bind(wx.EVT_MENU, self.parent.on_menu_read_from_LSQ, m_import_LSQ)
m_previous_interpretation = menu_Analysis.Append(-1, "&Import previous interpretations from a redo file\tCtrl-R", "")
self.Bind(wx.EVT_MENU, self.parent.on_menu_previous_interpretation, m_previous_interpretation)
m_save_interpretation = menu_Analysis.Append(-1, "&Save current interpretations to a redo file\tCtrl-S", "")
self.Bind(wx.EVT_MENU, self.parent.on_menu_save_interpretation, m_save_interpretation)
#--------------------------------------------------------------------
menu_Tools = wx.Menu()
m_view_VGP = menu_Tools.Append(-1, "&View VGPs\tCtrl-Shift-V", "")
self.Bind(wx.EVT_MENU, self.parent.on_menu_view_vgps, m_view_VGP)
#--------------------------------------------------------------------
menu_Help = wx.Menu()
m_help = menu_Help.Append(-1, "&Usage and Tips\tCtrl-H", "")
self.Bind(wx.EVT_MENU, self.on_menu_help, m_help)
m_cookbook = menu_Help.Append(-1, "&PmagPy Cookbook\tCtrl-Shift-W", "")
self.Bind(wx.EVT_MENU, self.parent.on_menu_cookbook, m_cookbook)
m_docs = menu_Help.Append(-1, "&Open Docs\tCtrl-Shift-H", "")
self.Bind(wx.EVT_MENU, self.parent.on_menu_docs, m_docs)
m_git = menu_Help.Append(-1, "&Github Page\tCtrl-Shift-G", "")
self.Bind(wx.EVT_MENU, self.parent.on_menu_git, m_git)
m_debug = menu_Help.Append(-1, "&Open Debugger\tCtrl-Shift-D", "")
self.Bind(wx.EVT_MENU, self.parent.on_menu_debug, m_debug)
#--------------------------------------------------------------------
menu_edit = wx.Menu()
m_new = menu_edit.Append(-1, "&New interpretation\tCtrl-N", "")
self.Bind(wx.EVT_MENU, self.parent.on_btn_add_fit, m_new)
m_delete = menu_edit.Append(-1, "&Delete interpretation\tCtrl-D", "")
self.Bind(wx.EVT_MENU, self.parent.on_btn_delete_fit, m_delete)
m_next_interp = menu_edit.Append(-1, "&Next interpretation\tCtrl-Up", "")
self.Bind(wx.EVT_MENU, self.parent.on_menu_next_interp, m_next_interp)
m_previous_interp = menu_edit.Append(-1, "&Previous interpretation\tCtrl-Down", "")
self.Bind(wx.EVT_MENU, self.parent.on_menu_prev_interp, m_previous_interp)
m_next_specimen = menu_edit.Append(-1, "&Next Specimen\tCtrl-Right", "")
self.Bind(wx.EVT_MENU, self.parent.on_next_button, m_next_specimen)
m_previous_specimen = menu_edit.Append(-1, "&Previous Specimen\tCtrl-Left", "")
self.Bind(wx.EVT_MENU, self.parent.on_prev_button, m_previous_specimen)
menu_coordinates = wx.Menu()
m_speci = menu_coordinates.Append(-1, "&Specimen Coordinates\tCtrl-P", "")
self.Bind(wx.EVT_MENU, self.parent.on_menu_change_speci_coord, m_speci)
if "geographic" in self.parent.coordinate_list:
m_geo = menu_coordinates.Append(-1, "&Geographic Coordinates\tCtrl-G", "")
self.Bind(wx.EVT_MENU, self.parent.on_menu_change_geo_coord, m_geo)
if "tilt-corrected" in self.parent.coordinate_list:
m_tilt = menu_coordinates.Append(-1, "&Tilt-Corrected Coordinates\tCtrl-T", "")
self.Bind(wx.EVT_MENU, self.parent.on_menu_change_tilt_coord, m_tilt)
m_coords = menu_edit.AppendSubMenu(menu_coordinates, "&Coordinate Systems")
#--------------------------------------------------------------------
#self.menubar.Append(menu_preferences, "& Preferences")
menubar.Append(menu_file, "&File")
menubar.Append(menu_edit, "&Edit")
menubar.Append(menu_Analysis, "&Analysis")
menubar.Append(menu_Tools, "&Tools")
menubar.Append(menu_Help, "&Help")
self.SetMenuBar(menubar)
################################Logger Functions##################################
def update_editor(self):
"""
updates the logger and plot on the interpretation editor window
"""
self.fit_list = []
self.search_choices = []
for specimen in self.specimens_list:
if specimen not in self.parent.pmag_results_data['specimens']: continue
self.fit_list += [(fit,specimen) for fit in self.parent.pmag_results_data['specimens'][specimen]]
self.logger.DeleteAllItems()
offset = 0
for i in range(len(self.fit_list)):
i -= offset
v = self.update_logger_entry(i)
if v == "s": offset += 1
def update_logger_entry(self,i):
"""
helper function that given a index in this objects fit_list parameter inserts a entry at that index
@param: i -> index in fit_list to find the (specimen_name,fit object) tup that determines all the data for this logger entry.
"""
if i < len(self.fit_list):
tup = self.fit_list[i]
elif i < self.logger.GetItemCount():
self.logger.DeleteItem(i)
return
else: return
coordinate_system = self.parent.COORDINATE_SYSTEM
fit = tup[0]
pars = fit.get(coordinate_system)
fmin,fmax,n,ftype,dec,inc,mad,dang,a95,sk,sr2 = "","","","","","","","","","",""
specimen = tup[1]
if coordinate_system=='geographic':
block_key = 'zijdblock_geo'
elif coordinate_system=='tilt-corrected':
block_key = 'zijdblock_tilt'
else:
block_key = 'zijdblock'
name = fit.name
if pars == {} and self.parent.Data[specimen][block_key] != []:
fit.put(specimen, coordinate_system, self.parent.get_PCA_parameters(specimen,fit,fit.tmin,fit.tmax,coordinate_system,fit.PCA_type))
pars = fit.get(coordinate_system)
if self.parent.Data[specimen][block_key]==[]:
spars = fit.get('specimen')
fmin = fit.tmin
fmax = fit.tmax
if 'specimen_n' in list(spars.keys()): n = str(spars['specimen_n'])
else: n = 'No Data'
if 'calculation_type' in list(spars.keys()): ftype = spars['calculation_type']
else: ftype = 'No Data'
dec = 'No Data'
inc = 'No Data'
mad = 'No Data'
dang = 'No Data'
a95 = 'No Data'
sk = 'No Data'
sr2 = 'No Data'
else:
if 'measurement_step_min' in list(pars.keys()): fmin = str(fit.tmin)
else: fmin = "N/A"
if 'measurement_step_max' in list(pars.keys()): fmax = str(fit.tmax)
else: fmax = "N/A"
if 'specimen_n' in list(pars.keys()): n = str(pars['specimen_n'])
else: n = "N/A"
if 'calculation_type' in list(pars.keys()): ftype = pars['calculation_type']
else: ftype = "N/A"
if 'specimen_dec' in list(pars.keys()): dec = "%.1f"%pars['specimen_dec']
else: dec = "N/A"
if 'specimen_inc' in list(pars.keys()): inc = "%.1f"%pars['specimen_inc']
else: inc = "N/A"
if 'specimen_mad' in list(pars.keys()): mad = "%.1f"%pars['specimen_mad']
else: mad = "N/A"
if 'specimen_dang' in list(pars.keys()): dang = "%.1f"%pars['specimen_dang']
else: dang = "N/A"
if 'specimen_alpha95' in list(pars.keys()): a95 = "%.1f"%pars['specimen_alpha95']
else: a95 = "N/A"
if 'specimen_k' in list(pars.keys()): sk = "%.1f"%pars['specimen_k']
else: sk = "N/A"
if 'specimen_r' in list(pars.keys()): sr2 = "%.1f"%pars['specimen_r']
else: sr2 = "N/A"
if self.search_query != "":
entry = (specimen+name+fmin+fmax+n+ftype+dec+inc+mad+dang+a95+sk+sr2).replace(" ","").lower()
if self.search_query not in entry:
self.fit_list.pop(i)
if i < self.logger.GetItemCount():
self.logger.DeleteItem(i)
return "s"
for e in (specimen,name,fmin,fmax,n,ftype,dec,inc,mad,dang,a95,sk,sr2):
if e not in self.search_choices:
self.search_choices.append(e)
if i < self.logger.GetItemCount():
self.logger.DeleteItem(i)
self.logger.InsertItem(i, str(specimen))
self.logger.SetItem(i, 1, name)
self.logger.SetItem(i, 2, fmin)
self.logger.SetItem(i, 3, fmax)
self.logger.SetItem(i, 4, n)
self.logger.SetItem(i, 5, ftype)
self.logger.SetItem(i, 6, dec)
self.logger.SetItem(i, 7, inc)
self.logger.SetItem(i, 8, mad)
self.logger.SetItem(i, 9, dang)
self.logger.SetItem(i, 10, a95)
self.logger.SetItem(i, 11, sk)
self.logger.SetItem(i, 12, sr2)
self.logger.SetItemBackgroundColour(i,"WHITE")
a,b = False,False
if fit in self.parent.bad_fits:
self.logger.SetItemBackgroundColour(i,"red")
b = True
if self.parent.current_fit == fit:
self.logger.SetItemBackgroundColour(i,"LIGHT BLUE")
self.logger_focus(i)
self.current_fit_index = i
a = True
if a and b:
self.logger.SetItemBackgroundColour(i,"red")
def update_current_fit_data(self):
"""
updates the current_fit of the parent Zeq_GUI entry in the case of it's data being changed
"""
if self.current_fit_index:
self.update_logger_entry(self.current_fit_index)
def change_selected(self,new_fit):
"""
updates passed in fit or index as current fit for the editor (does not affect parent),
if no parameters are passed in it sets first fit as current
@param: new_fit -> fit object to highlight as selected
"""
if len(self.fit_list)==0: return
if self.search_query and self.parent.current_fit not in [x[0] for x in self.fit_list]: return
if self.current_fit_index == None:
if not self.parent.current_fit: return
for i,(fit,specimen) in enumerate(self.fit_list):
if fit == self.parent.current_fit:
self.current_fit_index = i
break
i = 0
if isinstance(new_fit, Fit):
for i, (fit,speci) in enumerate(self.fit_list):
if fit == new_fit:
break
elif type(new_fit) is int:
i = new_fit
elif new_fit != None:
print(('cannot select fit of type: ' + str(type(new_fit))))
if self.current_fit_index != None and \
len(self.fit_list) > 0 and \
self.fit_list[self.current_fit_index][0] in self.parent.bad_fits:
self.logger.SetItemBackgroundColour(self.current_fit_index,"")
else:
self.logger.SetItemBackgroundColour(self.current_fit_index,"WHITE")
self.current_fit_index = i
if self.fit_list[self.current_fit_index][0] in self.parent.bad_fits:
self.logger.SetItemBackgroundColour(self.current_fit_index,"red")
else:
self.logger.SetItemBackgroundColour(self.current_fit_index,"LIGHT BLUE")
def logger_focus(self,i,focus_shift=16):
"""
focuses the logger on an index 12 entries below i
@param: i -> index to focus on
"""
if self.logger.GetItemCount()-1 > i+focus_shift:
i += focus_shift
else:
i = self.logger.GetItemCount()-1
self.logger.Focus(i)
def OnClick_listctrl(self, event):
"""
Edits the logger and the Zeq_GUI parent object to select the fit that was newly selected by a double click
@param: event -> wx.ListCtrlEvent that triggered this function
"""
i = event.GetIndex()
if self.parent.current_fit == self.fit_list[i][0]: return
self.parent.initialize_CART_rot(self.fit_list[i][1])
si = self.parent.specimens.index(self.fit_list[i][1])
self.parent.specimens_box.SetSelection(si)
self.parent.select_specimen(self.fit_list[i][1])
self.change_selected(i)
fi = 0
while (self.parent.s == self.fit_list[i][1] and i >= 0): i,fi = (i-1,fi+1)
self.parent.update_fit_box()
self.parent.fit_box.SetSelection(fi-1)
self.parent.update_selection()
def OnRightClickListctrl(self, event):
"""
Edits the logger and the Zeq_GUI parent object so that the selected interpretation is now marked as bad
@param: event -> wx.ListCtrlEvent that triggered this function
"""
i = event.GetIndex()
fit,spec = self.fit_list[i][0],self.fit_list[i][1]
if fit in self.parent.bad_fits:
if not self.parent.mark_fit_good(fit,spec=spec): return
if i == self.current_fit_index:
self.logger.SetItemBackgroundColour(i,"LIGHT BLUE")
else:
self.logger.SetItemBackgroundColour(i,"WHITE")
else:
if not self.parent.mark_fit_bad(fit): return
if i == self.current_fit_index:
self.logger.SetItemBackgroundColour(i,"red")
else:
self.logger.SetItemBackgroundColour(i,"red")
self.parent.calculate_high_levels_data()
self.parent.plot_high_levels_data()
self.logger_focus(i)
##################################Search Bar Functions###############################
def on_enter_search_bar(self,event):
self.search_query = self.search_bar.GetValue().replace(" ","").lower()
self.update_editor()
# def on_complete_search_bar(self,event):
# self.search_bar.AutoComplete(self.search_choices)
###################################ComboBox Functions################################
def update_bounds_boxes(self,B_list):
self.tmin_box.SetItems(B_list)
self.tmax_box.SetItems(B_list)
def add_new_color(self,event):
new_color = self.color_box.GetValue()
if ':' in new_color:
color_list = new_color.split(':')
color_name = color_list[0]
if len(color_list[1])==7 and color_list[1].startswith('#'):
for c in color_list[1][1:]:
if ord(c) < 48 or ord(c) > 70:
self.parent.user_warning('invalid hex color must be of form #0F0F0F');return
color_val = color_list[1]
elif '(' in color_list[1] and ')' in color_list[1]:
color_val = list(map(eval, tuple(color_list[1].strip('( )').split(','))))
for val in color_val:
if val > 1 or val < 0: self.parent.user_warning("invalid RGB sequence"); return
else: self.parent.user_warning("colors must be given as a valid hex color or rgb tuple"); return
else:
self.parent.user_warning("New colors must be passed in as $colorname:$colorval where $colorval is a valid hex color or rgb tuple"); return
self.color_dict[color_name] = color_val
#clear old box
self.color_box.Clear()
#update fit box
self.color_box.SetItems([''] + sorted(self.color_dict.keys()))
def on_select_coordinates(self,event):
self.parent.coordinates_box.SetStringSelection(self.coordinates_box.GetStringSelection())
self.parent.onSelect_coordinates(event)
def on_select_show_box(self,event):
"""
Changes the type of mean shown on the high levels mean plot so that single dots represent one of whatever the value of this box is.
@param: event -> the wx.COMBOBOXEVENT that triggered this function
"""
self.parent.UPPER_LEVEL_SHOW=self.show_box.GetValue()
self.parent.calculate_high_levels_data()
self.parent.plot_high_levels_data()
def on_select_high_level(self,event,called_by_parent=False):
"""
alters the possible entries in level_names combobox to give the user selections for which specimen interpretations to display in the logger
@param: event -> the wx.COMBOBOXEVENT that triggered this function
"""
UPPER_LEVEL=self.level_box.GetValue()
if UPPER_LEVEL=='sample':
self.level_names.SetItems(self.parent.samples)
self.level_names.SetStringSelection(self.parent.Data_hierarchy['sample_of_specimen'][self.parent.s])
if UPPER_LEVEL=='site':
self.level_names.SetItems(self.parent.sites)
self.level_names.SetStringSelection(self.parent.Data_hierarchy['site_of_specimen'][self.parent.s])
if UPPER_LEVEL=='location':
self.level_names.SetItems(self.parent.locations)
self.level_names.SetStringSelection(self.parent.Data_hierarchy['location_of_specimen'][self.parent.s])
if UPPER_LEVEL=='study':
self.level_names.SetItems(['this study'])
self.level_names.SetStringSelection('this study')
if not called_by_parent:
self.parent.level_box.SetStringSelection(UPPER_LEVEL)
self.parent.onSelect_high_level(event,True)
self.on_select_level_name(event)
def on_select_level_name(self,event,called_by_parent=False):
"""
change this objects specimens_list to control which specimen interpretatoins are displayed in this objects logger
@param: event -> the wx.ComboBoxEvent that triggered this function
"""
high_level_name=str(self.level_names.GetValue())
if self.level_box.GetValue()=='sample':
self.specimens_list=self.parent.Data_hierarchy['samples'][high_level_name]['specimens']
elif self.level_box.GetValue()=='site':
self.specimens_list=self.parent.Data_hierarchy['sites'][high_level_name]['specimens']
elif self.level_box.GetValue()=='location':
self.specimens_list=self.parent.Data_hierarchy['locations'][high_level_name]['specimens']
elif self.level_box.GetValue()=='study':
self.specimens_list=self.parent.Data_hierarchy['study']['this study']['specimens']
if not called_by_parent:
self.parent.level_names.SetStringSelection(high_level_name)
self.parent.onSelect_level_name(event,True)
self.specimens_list.sort(key=spec_key_func)
self.update_editor()
def on_select_mean_type_box(self, event):
"""
set parent Zeq_GUI to reflect change in this box and change the
@param: event -> the wx.ComboBoxEvent that triggered this function
"""
new_mean_type = self.mean_type_box.GetValue()
if new_mean_type == "None":
self.parent.clear_high_level_pars()
self.parent.mean_type_box.SetStringSelection(new_mean_type)
self.parent.onSelect_mean_type_box(event)
def on_select_mean_fit_box(self, event):
"""
set parent Zeq_GUI to reflect the change in this box then replot the high level means plot
@param: event -> the wx.COMBOBOXEVENT that triggered this function
"""
new_mean_fit = self.mean_fit_box.GetValue()
self.parent.mean_fit_box.SetStringSelection(new_mean_fit)
self.parent.onSelect_mean_fit_box(event)
###################################Button Functions##################################
def on_select_stats_button(self,event):
"""
"""
i = self.switch_stats_button.GetValue()
self.parent.switch_stats_button.SetValue(i)
self.parent.update_high_level_stats()
def add_highlighted_fits(self, evnet):
"""
adds a new interpretation to each specimen highlighted in logger if multiple interpretations are highlighted of the same specimen only one new interpretation is added
@param: event -> the wx.ButtonEvent that triggered this function
"""
specimens = []
next_i = self.logger.GetNextSelected(-1)
if next_i == -1: return
while next_i != -1:
fit,specimen = self.fit_list[next_i]
if specimen in specimens:
next_i = self.logger.GetNextSelected(next_i)
continue
else: specimens.append(specimen)
next_i = self.logger.GetNextSelected(next_i)
for specimen in specimens:
self.add_fit_to_specimen(specimen)
self.update_editor()
self.parent.update_selection()
def add_fit_to_all(self,event):
for specimen in self.parent.specimens:
self.add_fit_to_specimen(specimen)
self.update_editor()
self.parent.update_selection()
def add_fit_to_specimen(self,specimen):
if specimen not in self.parent.pmag_results_data['specimens']:
self.parent.pmag_results_data['specimens'][specimen] = []
new_name = self.name_box.GetLineText(0)
new_color = self.color_box.GetValue()
new_tmin = self.tmin_box.GetValue()
new_tmax = self.tmax_box.GetValue()
if not new_name:
next_fit = str(len(self.parent.pmag_results_data['specimens'][specimen]) + 1)
while ("Fit " + next_fit) in [x.name for x in self.parent.pmag_results_data['specimens'][specimen]]:
next_fit = str(int(next_fit) + 1)
new_name = ("Fit " + next_fit)
if not new_color:
next_fit = str(len(self.parent.pmag_results_data['specimens'][specimen]) + 1)
new_color = self.parent.colors[(int(next_fit)-1) % len(self.parent.colors)]
else: new_color = self.color_dict[new_color]
if not new_tmin: new_tmin = None
if not new_tmax: new_tmax = None
if new_name in [x.name for x in self.parent.pmag_results_data['specimens'][specimen]]:
print(('-E- interpretation called ' + new_name + ' already exsists for specimen ' + specimen))
return
self.parent.add_fit(specimen, new_name, new_tmin, new_tmax, color=new_color,suppress_warnings=True)
def delete_highlighted_fits(self, event):
"""
iterates through all highlighted fits in the logger of this object and removes them from the logger and the Zeq_GUI parent object
@param: event -> the wx.ButtonEvent that triggered this function
"""
next_i = -1
deleted_items = []
while True:
next_i = self.logger.GetNextSelected(next_i)
if next_i == -1:
break
deleted_items.append(next_i)
deleted_items.sort(reverse=True)
for item in deleted_items:
self.delete_entry(index=item)
self.parent.update_selection()
def delete_entry(self, fit = None, index = None):
"""
deletes the single item from the logger of this object that corrisponds to either the passed in fit or index. Note this function mutaits the logger of this object if deleting more than one entry be sure to pass items to delete in from highest index to lowest or else odd things can happen.
@param: fit -> Fit object to delete from this objects logger
@param: index -> integer index of the entry to delete from this objects logger
"""
if type(index) == int and not fit:
fit,specimen = self.fit_list[index]
if fit and type(index) == int:
for i, (f,s) in enumerate(self.fit_list):
if fit == f:
index,specimen = i,s
break
if index == self.current_fit_index: self.current_fit_index = None
if fit not in self.parent.pmag_results_data['specimens'][specimen]:
print(("cannot remove item (entry #: " + str(index) + ") as it doesn't exist, this is a dumb bug contact devs"))
self.logger.DeleteItem(index)
return
self.parent.pmag_results_data['specimens'][specimen].remove(fit)
del self.fit_list[index]
self.logger.DeleteItem(index)
def apply_changes(self, event):
"""
applies the changes in the various attribute boxes of this object to all highlighted fit objects in the logger, these changes are reflected both in this object and in the Zeq_GUI parent object.
@param: event -> the wx.ButtonEvent that triggered this function
"""
new_name = self.name_box.GetLineText(0)
new_color = self.color_box.GetValue()
new_tmin = self.tmin_box.GetValue()
new_tmax = self.tmax_box.GetValue()
next_i = -1
changed_i = []
while True:
next_i = self.logger.GetNextSelected(next_i)
if next_i == -1:
break
specimen = self.fit_list[next_i][1]
fit = self.fit_list[next_i][0]
if new_name:
if new_name not in [x.name for x in self.parent.pmag_results_data['specimens'][specimen]]: fit.name = new_name
if new_color:
fit.color = self.color_dict[new_color]
#testing
not_both = True
if new_tmin and new_tmax:
if fit == self.parent.current_fit:
self.parent.tmin_box.SetStringSelection(new_tmin)
self.parent.tmax_box.SetStringSelection(new_tmax)
fit.put(specimen,self.parent.COORDINATE_SYSTEM, self.parent.get_PCA_parameters(specimen,fit,new_tmin,new_tmax,self.parent.COORDINATE_SYSTEM,fit.PCA_type))
not_both = False
if new_tmin and not_both:
if fit == self.parent.current_fit:
self.parent.tmin_box.SetStringSelection(new_tmin)
fit.put(specimen,self.parent.COORDINATE_SYSTEM, self.parent.get_PCA_parameters(specimen,fit,new_tmin,fit.tmax,self.parent.COORDINATE_SYSTEM,fit.PCA_type))
if new_tmax and not_both:
if fit == self.parent.current_fit:
self.parent.tmax_box.SetStringSelection(new_tmax)
fit.put(specimen,self.parent.COORDINATE_SYSTEM, self.parent.get_PCA_parameters(specimen,fit,fit.tmin,new_tmax,self.parent.COORDINATE_SYSTEM,fit.PCA_type))
changed_i.append(next_i)
offset = 0
for i in changed_i:
i -= offset
v = self.update_logger_entry(i)
if v == "s":
offset += 1
self.parent.update_selection()
###################################Canvas Functions##################################
def scatter(self,*args,**kwargs):
# args_corrected = self.eqarea.transAxes.transform(vstack(args).T)
# x,y = args_corrected.T
return self.eqarea.scatter(*args,**kwargs)
def plot(self,*args,**kwargs):
# args_corrected = self.eqarea.transAxes.transform(vstack(args).T)
# x,y = args_corrected.T
return self.eqarea.plot(*args,**kwargs)
def write(self,text):
return self.eqarea.text(-1.2,1.15,text,{'family':self.font_type, 'fontsize':10*self.GUI_RESOLUTION, 'style':'normal','va':'center', 'ha':'left' })
def draw_net(self):
draw_net(self.eqarea)
def draw(self):
self.toolbar.home()
self.eqarea.set_xlim(-1., 1.)
self.eqarea.set_ylim(-1., 1.)
self.eqarea.axes.set_aspect('equal')
self.eqarea.axis('off')
self.canvas.draw()
def pan_zoom_high_equalarea(self,event):
"""
Uses the toolbar for the canvas to change the function from zoom to pan or pan to zoom
@param: event -> the wx.MouseEvent that triggered this funciton
"""
if event.LeftIsDown() or event.ButtonDClick():
return
elif self.high_EA_setting == "Zoom":
self.high_EA_setting = "Pan"
try: self.toolbar.pan('off')
except TypeError: pass
elif self.high_EA_setting == "Pan":
self.high_EA_setting = "Zoom"
try: self.toolbar.zoom()
except TypeError: pass
else:
self.high_EA_setting = "Zoom"
try: self.toolbar.zoom()
except TypeError: pass
def home_high_equalarea(self,event):
"""
returns high equal area to it's original position
@param: event -> the wx.MouseEvent that triggered the call of this function
@alters: toolbar setting
"""
self.toolbar.home()
def on_change_high_mouse_cursor(self,event):
"""
If mouse is over data point making it selectable change the shape of the cursor
@param: event -> the wx Mouseevent for that click
"""
if self.show_box.GetValue() != "specimens": return
if not self.parent.high_EA_xdata or not self.parent.high_EA_ydata: return
pos=event.GetPosition()
width, height = self.canvas.get_width_height()
pos[1] = height - pos[1]
xpick_data,ypick_data = pos
xdata_org = self.parent.high_EA_xdata
ydata_org = self.parent.high_EA_ydata
data_corrected = self.eqarea.transData.transform(vstack([xdata_org,ydata_org]).T)
xdata,ydata = data_corrected.T
xdata = list(map(float,xdata))
ydata = list(map(float,ydata))
e = 4e0
if self.high_EA_setting == "Zoom":
self.canvas.SetCursor(wx.Cursor(wx.CURSOR_CROSS))
else:
self.canvas.SetCursor(wx.Cursor(wx.CURSOR_ARROW))
for i,(x,y) in enumerate(zip(xdata,ydata)):
if 0 < sqrt((x-xpick_data)**2. + (y-ypick_data)**2.) < e:
self.canvas.SetCursor(wx.Cursor(wx.CURSOR_HAND))
break
event.Skip()
def on_equalarea_high_select(self,event):
self.parent.on_equalarea_high_select(event,fig = self.eqarea, canvas = self.canvas)
###############################Menu Functions######################################
def on_menu_help(self,event):
"""
Toggles the GUI's help mode which allows user to click on any part of the dialog and get help
@param: event -> wx.MenuEvent that triggers this function
"""
self.helper.BeginContextHelp(None)
###############################Window Functions######################################
def on_close_edit_window(self, event):
"""
the function that is triggered on the close of the interpretation editor window
@param: event -> wx.WindowEvent that triggered this function
"""
self.parent.ie_open = False
self.Destroy()
class graphManager(wx.Frame):
def __init__(self, parent):
wx.Frame.__init__(self, parent, id=wx.ID_ANY, title=u"ReGenesis", pos=wx.DefaultPosition,
size=wx.Size(MAXWIDTH, MAXHEIGHT),
style=wx.DEFAULT_FRAME_STYLE & ~ (wx.RESIZE_BORDER |
wx.MAXIMIZE_BOX))
self.SetSizeHints(wx.DefaultSize, wx.DefaultSize)
self.sizer = wx.BoxSizer(wx.VERTICAL)
self.renderer = wx.Panel(self, wx.ID_ANY, wx.DefaultPosition, wx.DefaultSize, wx.TAB_TRAVERSAL)
self.sizer.Add(self.renderer, 1, wx.EXPAND | wx.ALL, 5)
# toolbar
self.toolbar = wx.Panel(self, wx.ID_ANY, wx.DefaultPosition, wx.DefaultSize, wx.TAB_TRAVERSAL)
self.toolbar.SetMinSize(wx.Size(1200, 40))
self.toolbar.SetMaxSize(wx.Size(1200,40))
self.toolbarSizer = wx.BoxSizer(wx.HORIZONTAL)
# adding buttons
self.homeButton = wx.Button(self.toolbar, wx.ID_ANY, u"Reset", wx.DefaultPosition, wx.DefaultSize, 0)
self.toolbarSizer.Add(self.homeButton, 0, wx.ALL, 5)
self.backButton = wx.Button(self.toolbar, wx.ID_ANY, u"Undo", wx.DefaultPosition, wx.DefaultSize, 0)
self.toolbarSizer.Add(self.backButton, 0, wx.ALL, 5)
self.forwardButton = wx.Button(self.toolbar, wx.ID_ANY, u"Redo", wx.DefaultPosition, wx.DefaultSize, 0)
self.toolbarSizer.Add(self.forwardButton, 0, wx.ALL, 5)
self.panButton = wx.Button(self.toolbar, wx.ID_ANY, u"Pan", wx.DefaultPosition, wx.DefaultSize, 0)
self.toolbarSizer.Add(self.panButton, 0, wx.ALL, 5)
self.zoomButton = wx.Button(self.toolbar, wx.ID_ANY, u"Zoom", wx.DefaultPosition, wx.DefaultSize, 0)
self.toolbarSizer.Add(self.zoomButton, 0, wx.ALL, 5)
self.appearanceButton = wx.Button(self.toolbar, wx.ID_ANY, u"Edit Appearance", wx.DefaultPosition, wx.DefaultSize, 0)
self.toolbarSizer.Add(self.appearanceButton, 0, wx.ALL, 5)
self.saveButton = wx.Button(self.toolbar, wx.ID_ANY, u"Save", wx.DefaultPosition, wx.DefaultSize, 0)
self.toolbarSizer.Add(self.saveButton, 0, wx.ALL, 5)
self.loadButton = wx.Button(self.toolbar, wx.ID_ANY, u"Load", wx.DefaultPosition, wx.DefaultSize, 0)
self.toolbarSizer.Add(self.loadButton, 0, wx.ALL, 5)
self.exportButton = wx.Button(self.toolbar, wx.ID_ANY, u"Export", wx.DefaultPosition, wx.DefaultSize, 0)
self.toolbarSizer.Add(self.exportButton, 0, wx.ALL, 5)
self.toolbar.SetSizer(self.toolbarSizer)
self.toolbar.Layout()
self.toolbarSizer.Fit(self.toolbar)
self.sizer.Add(self.toolbar, 1, wx.EXPAND | wx.ALL, 5)
self.SetSizer(self.sizer)
self.Layout()
self.MenuBar = wx.MenuBar(0)
#new graph menu options
self.newGraph = wx.Menu()
self.newPCA = wx.MenuItem(self.newGraph, wx.ID_ANY, u"PCA Graph", wx.EmptyString, wx.ITEM_NORMAL)
self.newGraph.Append(self.newPCA)
self.newAdmixture = wx.MenuItem(self.newGraph, wx.ID_ANY, u"Admixture Graph", wx.EmptyString, wx.ITEM_NORMAL)
self.newGraph.Append(self.newAdmixture)
self.MenuBar.Append(self.newGraph, u"New Graph")
#Manage Graphs Menu
self.manageGraphs = wx.Menu()
self.saveGraph = wx.MenuItem(self.manageGraphs, wx.ID_ANY, u"Save", wx.EmptyString, wx.ITEM_NORMAL)
self.manageGraphs.Append(self.saveGraph)
self.loadGraph = wx.MenuItem(self.manageGraphs, wx.ID_ANY, u"Load", wx.EmptyString, wx.ITEM_NORMAL)
self.manageGraphs.Append(self.loadGraph)
self.exportGraph = wx.MenuItem(self.manageGraphs, wx.ID_ANY, u"Export", wx.EmptyString, wx.ITEM_NORMAL)
self.manageGraphs.Append(self.exportGraph)
self.MenuBar.Append(self.manageGraphs, u"Manage Graphs")
self.SetMenuBar(self.MenuBar)
self.Centre(wx.BOTH)
# Connect Events
# New graph events
self.Bind(wx.EVT_MENU, self.newPCAOnMenuSelection, id=self.newPCA.GetId())
self.Bind(wx.EVT_MENU, self.newAdmixtureOnMenuSelection, id=self.newAdmixture.GetId())
# Manage graph events
self.Bind(wx.EVT_MENU, self.saveGraphOnMenuSelection, id=self.saveGraph.GetId())
self.Bind(wx.EVT_MENU, self.loadGraphOnMenuSelection, id=self.loadGraph.GetId())
self.Bind(wx.EVT_MENU, self.exportGraphOnMenuSelection, id=self.exportGraph.GetId())
# Toolbar Events
self.saveButton.Bind(wx.EVT_BUTTON, self.saveGraphOnMenuSelection)
self.loadButton.Bind(wx.EVT_BUTTON, self.loadGraphOnMenuSelection)
self.exportButton.Bind(wx.EVT_BUTTON, self.onExportButtonClick)
self.zoomButton.Bind(wx.EVT_BUTTON, self.onZoomButtonClick)
self.appearanceButton.Bind(wx.EVT_BUTTON, self.onAppearanceButtonClick)
self.homeButton.Bind(wx.EVT_BUTTON, self.onHomeButtonClick)
self.panButton.Bind(wx.EVT_BUTTON, self.onPanButtonClick)
self.forwardButton.Bind(wx.EVT_BUTTON, self.onForwardButtonClick)
self.backButton.Bind(wx.EVT_BUTTON, self.onBackButtonClick)
# Variable to store which graph type is currently loaded for saving purposes
self.graphType = None
def __del__(self):
pass
def createFigure(self):
"""
Creates figure or clears figure and adds a new subplot to the figure.
"""
# checking if figure exists to avoid reinitializing
if not hasattr(self, 'figure'):
self.figure = mpl.figure.Figure(figsize=(FIGUREWIDTH, FIGUREHEIGHT), dpi=FIGUREDPI)
else:
self.figure.clf()
# add subplot to newly created/cleared figure
self.axes = self.figure.add_subplot(111)
def showGraph(self):
"""
Produces key and canvas.
"""
self.axes.legend()
self.canvas = FigureCanvas(self.renderer, wx.ID_ANY, self.figure)
# Initialises navToolbar instance to use built in functions for custom toolbar
if not hasattr(self, "navToolbar"):
locale = wx.Locale(wx.LANGUAGE_ENGLISH)
self.navToolbar = NavigationToolbar(self.canvas)
self.navToolbar.Hide()
def CreatePCAPlot(self, data):
"""
Creates pca graph and draws it.
"""
self.graph = pcaGraph(data)
pcaData = self.graph.findPcaData(True)
self.plotPcaData(pcaData)
def CreateAdmixturePlot(self, data):
"""
Creates admixture graph and draws it.
"""
self.graph = admixGraph(data)
admixData = self.graph.genDataDictionary()
self.plotAdmixData(admixData)
def plotPcaData(self, pcaData):
"""
Plots PCA data to figure.
"""
pcaAppearance.groupNames = self.graph.getGroups()
pcaAppearance.groupColours = self.graph.getColours()
pcaAppearance.groupShapes = self.graph.getShapes()
pcaAppearance.groupSizes = self.graph.getSize()
pcaAppearance.title = self.graph.getTitle()
pcaAppearance.hasGrid = self.graph.getHasGrid()
pcaAppearance.hasLabels = self.graph.getHasLabels()
self.createFigure()
for group in pcaData:
x = pcaData[group]['x']
y = pcaData[group]['y']
# getting the colours of the groups
colourList = self.graph.getColours()
# getting the shapes of the groups
shapeList = self.graph.getShapes()
#getting the sizes of the groups
sizeList = self.graph.getSize()
#getting the title of the graph
title = self.graph.getTitle()
hasGrid = self.graph.getHasGrid()
hasLabels = self.graph.getHasLabels()
# plotting the graph
self.axes.scatter(x, y, label=group, s=sizeList[group], color=colourList[group], marker=shapeList[group])
self.axes.set_title(title)
if(hasGrid):
self.axes.grid()
if(hasLabels):
self.axes.set_xlabel(self.graph.getXLabel())
self.axes.set_ylabel(self.graph.getYLabel())
self.showGraph()
return
def plotAdmixData(self, admixData):
"""
Plots admixture data to figure.
"""
groups = list(admixData.keys())
ancestryLabels = list(admixData[groups[0]].keys())
individualCount = 0
groupCenters = []
# creating figure
self.createFigure()
fullRatios = []
self.axes.set_xticklabels([])
for group in admixData:
ratios = []
for ancestry in admixData[group]:
anc = admixData[group][ancestry]
ratios.append(anc)
numAncestries = len(ratios)
numIndividuals = len(ratios[0])
# Normalising ratios so they add up to 1
tempRatios = list(zip(*ratios))
sums = list(map(sum, tempRatios))
for ancestry in ratios:
for i in range(len(ancestry)):
ancestry[i] /= sums[i]
# storing values used for separating groups at presentation
groupCenters.append(individualCount + (numIndividuals/2))
individualCount += numIndividuals
self.axes.axvline(individualCount, color='w')
if len(fullRatios) > 0:
for i in range(len(fullRatios)):
fullRatios[i].extend(ratios[i])
else:
fullRatios = ratios
# plotting bars
indexes = [i for i in range(individualCount)]
self.axes.bar(indexes, fullRatios[0], 1, label=ancestryLabels[0])
# barBottom keeps track of the current height of each bar so subsequent bars can be plotted above
barBottom = [0 for i in range(individualCount)]
for i in range(0, numAncestries - 1):
# increasing height of barBottom
barBottom = [x + y for x, y in zip(barBottom, fullRatios[i])]
self.axes.bar(indexes, fullRatios[i + 1], 1, bottom=barBottom, label=ancestryLabels[i + 1])
# setting labels for better readability
self.axes.set_xticks(groupCenters)
self.axes.set_xticklabels(groups)
self.showGraph()
# Event Handlers
def newPCAOnMenuSelection(self, event):
"""
Event handler for new PCA menu selection.
"""
self.child = pcaCreator(self)
self.Disable()
self.child.ShowModal()
if self.child.result == "CANCEL":
event.Skip()
elif self.child.result == "CONFIRM":
self.CreatePCAPlot(self.child._dataDict)
def newAdmixtureOnMenuSelection(self, event):
"""
Event handler for new Admixture menu selection.
"""
self.child = admixCreator(self)
self.Disable()
self.child.ShowModal()
if self.child.result == "CANCEL":
event.Skip()
elif self.child.result == "CONFIRM":
self.CreateAdmixturePlot(self.child._dataDict)
def saveGraphOnMenuSelection(self, event):
"""
Event handler for save Graph menu selection.
"""
with wx.FileDialog(self, "Save Graph file", wildcard="Regenesis Graph File files (*.rgf)|*.rgf",
style=wx.FD_SAVE | wx.FD_OVERWRITE_PROMPT) as fileDialog:
if fileDialog.ShowModal() == wx.ID_CANCEL:
return # the user changed their mind
# save the current contents in the file
pathname = fileDialog.GetPath()
try:
with open(pathname, 'w', encoding='utf-8') as file:
self.doSaveData(file)
except IOError:
wx.LogError("Cannot save current data in file '%s'." % pathname)
def doSaveData(self, f):
"""
Saves project state to file.
"""
# find dictionary of values to plot
if self.graph.getGraphType() == 'admix':
data = self.graph.getSaveFileData()
# Add a graph type key to the data dict
data.update({"GraphType" : 'admix'})
elif self.graph.getGraphType() == 'pca':
data = self.graph.getSaveFileData()
# Add a graph type key to the data dict
data.update({"GraphType" : "pca"})
json.dump(data, f, ensure_ascii=False)
f.close()
def loadGraphOnMenuSelection(self, event):
"""
Event handler for load Graph menu selection.
"""
# otherwise ask the user what new file to open
with wx.FileDialog(self, "Load Graph file", wildcard="Regenesis Graph File files (*.rgf)|*.rgf",
style=wx.FD_OPEN | wx.FD_FILE_MUST_EXIST) as fileDialog:
if fileDialog.ShowModal() == wx.ID_CANCEL:
return # the user changed their mind
# Proceed loading the file chosen by the user
pathname = fileDialog.GetPath()
try:
with open(pathname, 'r') as file:
self.doLoadData(file)
except IOError:
wx.LogError("Cannot open file '%s'." % file)
def doLoadData(self,f):
"""
Loads project state from file.
"""
data = json.load(f)
if data.get("GraphType") == 'admix':
# Delete the Graph Type key from the data dict
del data["GraphType"]
self.CreateAdmixturePlot(data)
elif data.get("GraphType") == 'pca':
# Delete the Graph Type key from the data dict
del data["GraphType"]
self.CreatePCAPlot(data)
f.close()
def exportGraphOnMenuSelection(self, event):
"""
Exports graph as image.
"""
self.navToolbar.save_figure()
def onZoomButtonClick(self, event):
"""
Activates zoom mode on graph.
"""
self.navToolbar.zoom()
def onAppearanceButtonClick(self, event):
"""
Opens appearance editor.
"""
if self.graph.getGraphType() == 'pca':
self.child = pcaAppearance(self)
self.Disable()
self.child.ShowModal()
else:
msgDlg = wx.MessageDialog(parent=self, message="Appearance editing functionality for admixture graph still to come in future releases",
caption="Edit Admixture graph appearance", style=wx.ICON_INFORMATION)
val = msgDlg.ShowModal()
msgDlg.Show()
if self.child.result == "CANCEL":
event.Skip()
elif self.child.result == "CONFIRM":
if self.graph.getGraphType() == 'pca':
#re-plotting the graph with the newly chosen colours
newColours = self.child.GetColours()
self.graph.setColours(newColours)
#re-plotting the graph with the newly chosen shape
newShapes = self.child.GetShapes()
self.graph.setShapes(newShapes)
#re-plotting the graph with the new group size
newSize = self.child.GetSize()
self.graph.setSize(newSize)
#re-plotting graph with new title
newTitle = self.child.GetTitle()
self.graph.setTitle(newTitle)
#re-plotting graph with grid settings
grid = self.child.GetHasGrid()
self.graph.setHasGrid(grid)
#re-plotting graph with labels settings
labels = self.child.GetHasLabels()
self.graph.setHasLabels(labels)
pcaData = self.graph.findPcaData(False)
self.plotPcaData(pcaData)
#self.CreatePCAPlot(self.child._dataDict)
elif self.graph.getGraphType() == "admix":
wx.MessageDialog(None, "Admixture Appearance editing to b")
def onHomeButtonClick(self, event):
"""
Resets graph panning and zooming
"""
self.navToolbar.home()
def onPanButtonClick(self, event):
"""
Activates Pan mode on graph.
"""
self.navToolbar.pan()
def onConfigureButtonClick(self, event):
self.navToolbar.configure_subplots()
def onBackButtonClick(self, event):
"""
Undoes latest panning or zooming change.
"""
self.navToolbar.back()
def onForwardButtonClick(self, event):
"""
Redoes latest undone panning or zooming change.
"""
self.navToolbar.forward()
def onExportButtonClick(self, event):
"""
Exports graph as image.
"""
self.navToolbar.save_figure()
class InterpretationEditorFrame(wx.Frame):
#########################Init Funcions#############################
def __init__(self,parent):
"""Constructor"""
#set parent and resolution
self.parent = parent
self.GUI_RESOLUTION=self.parent.GUI_RESOLUTION
#call init of super class
wx.Frame.__init__(self, self.parent, title="Interpretation Editor",size=(675*self.GUI_RESOLUTION,425*self.GUI_RESOLUTION))
self.Bind(wx.EVT_CLOSE, self.on_close_edit_window)
#make the Panel
self.panel = wx.Panel(self,-1,size=(700*self.GUI_RESOLUTION,450*self.GUI_RESOLUTION))
#set icon
icon = wx.EmptyIcon()
icon.CopyFromBitmap(wx.Bitmap(os.path.join(PMAGPY_DIRECTORY, "images/PmagPy.ico"), wx.BITMAP_TYPE_ANY))
self.SetIcon(icon)
self.specimens_list=self.parent.specimens
self.current_fit_index = None
self.search_query = ""
self.font_type = self.parent.font_type
#build UI
self.init_UI()
#update with stuff
self.on_select_level_name(None)
def init_UI(self):
"""
Builds User Interface for the interpretation Editor
"""
#set fonts
font1 = wx.Font(10, wx.SWISS, wx.NORMAL, wx.NORMAL, False, self.font_type)
font2 = wx.Font(13, wx.SWISS, wx.NORMAL, wx.NORMAL, False, self.font_type)
#if you're on mac do some funny stuff to make it look okay
is_mac = False
if sys.platform.startswith("darwin"):
is_mac = True
self.search_bar = wx.SearchCtrl(self.panel, size=(350*self.GUI_RESOLUTION,25) ,style=wx.TE_PROCESS_ENTER | wx.TE_PROCESS_TAB | wx.TE_NOHIDESEL)
self.Bind(wx.EVT_TEXT_ENTER, self.on_enter_search_bar,self.search_bar)
self.Bind(wx.EVT_SEARCHCTRL_SEARCH_BTN, self.on_enter_search_bar,self.search_bar)
# self.Bind(wx.EVT_TEXT, self.on_complete_search_bar,self.search_bar)
#build logger
self.logger = wx.ListCtrl(self.panel, -1, size=(350*self.GUI_RESOLUTION,475*self.GUI_RESOLUTION),style=wx.LC_REPORT)
self.logger.SetFont(font1)
self.logger.InsertColumn(0, 'specimen',width=55*self.GUI_RESOLUTION)
self.logger.InsertColumn(1, 'fit name',width=45*self.GUI_RESOLUTION)
self.logger.InsertColumn(2, 'max',width=35*self.GUI_RESOLUTION)
self.logger.InsertColumn(3, 'min',width=35*self.GUI_RESOLUTION)
self.logger.InsertColumn(4, 'n',width=25*self.GUI_RESOLUTION)
self.logger.InsertColumn(5, 'fit type',width=60*self.GUI_RESOLUTION)
self.logger.InsertColumn(6, 'dec',width=35*self.GUI_RESOLUTION)
self.logger.InsertColumn(7, 'inc',width=35*self.GUI_RESOLUTION)
self.logger.InsertColumn(8, 'mad',width=35*self.GUI_RESOLUTION)
self.Bind(wx.EVT_LIST_ITEM_ACTIVATED, self.OnClick_listctrl, self.logger)
self.Bind(wx.EVT_LIST_ITEM_RIGHT_CLICK,self.OnRightClickListctrl,self.logger)
#set fit attributes box
self.display_sizer = wx.StaticBoxSizer(wx.StaticBox(self.panel, wx.ID_ANY, "display options"), wx.HORIZONTAL)
self.name_sizer = wx.StaticBoxSizer(wx.StaticBox(self.panel, wx.ID_ANY, "fit name/color"), wx.VERTICAL)
self.bounds_sizer = wx.StaticBoxSizer(wx.StaticBox(self.panel, wx.ID_ANY, "fit bounds"), wx.VERTICAL)
self.buttons_sizer = wx.StaticBoxSizer(wx.StaticBox(self.panel, wx.ID_ANY), wx.VERTICAL)
#logger display selection box
UPPER_LEVEL = self.parent.level_box.GetValue()
if UPPER_LEVEL=='sample':
name_choices = self.parent.samples
if UPPER_LEVEL=='site':
name_choices = self.parent.sites
if UPPER_LEVEL=='location':
name_choices = self.parent.locations
if UPPER_LEVEL=='study':
name_choices = ['this study']
self.level_box = wx.ComboBox(self.panel, -1, size=(100*self.GUI_RESOLUTION, 25), value=UPPER_LEVEL, choices=['sample','site','location','study'], style=wx.CB_DROPDOWN)
self.Bind(wx.EVT_COMBOBOX, self.on_select_higher_level,self.level_box)
self.level_names = wx.ComboBox(self.panel, -1, size=(100*self.GUI_RESOLUTION, 25), value=self.parent.level_names.GetValue(), choices=name_choices, style=wx.CB_DROPDOWN)
self.Bind(wx.EVT_COMBOBOX, self.on_select_level_name,self.level_names)
#mean type and plot display boxes
self.mean_type_box = wx.ComboBox(self.panel, -1, size=(100*self.GUI_RESOLUTION, 25), value=self.parent.mean_type_box.GetValue(), choices=['Fisher','Fisher by polarity','None'], style=wx.CB_DROPDOWN,name="high_type")
self.Bind(wx.EVT_COMBOBOX, self.on_select_mean_type_box,self.mean_type_box)
self.mean_fit_box = wx.ComboBox(self.panel, -1, size=(100*self.GUI_RESOLUTION, 25), value=self.parent.mean_fit, choices=(['None','All'] + self.parent.fit_list), style=wx.CB_DROPDOWN,name="high_type")
self.Bind(wx.EVT_COMBOBOX, self.on_select_mean_fit_box,self.mean_fit_box)
#show box
if UPPER_LEVEL == "study" or UPPER_LEVEL == "location":
show_box_choices = ['specimens','samples','sites']
if UPPER_LEVEL == "site":
show_box_choices = ['specimens','samples']
if UPPER_LEVEL == "sample":
show_box_choices = ['specimens']
self.show_box = wx.ComboBox(self.panel, -1, size=(100*self.GUI_RESOLUTION, 25), value='specimens', choices=show_box_choices, style=wx.CB_DROPDOWN,name="high_elements")
self.Bind(wx.EVT_COMBOBOX, self.on_select_show_box,self.show_box)
#coordinates box
self.coordinates_box = wx.ComboBox(self.panel, -1, size=(100*self.GUI_RESOLUTION, 25), choices=self.parent.coordinate_list, value=self.parent.coordinates_box.GetValue(), style=wx.CB_DROPDOWN, name="coordinates")
self.Bind(wx.EVT_COMBOBOX, self.on_select_coordinates,self.coordinates_box)
#bounds select boxes
self.tmin_box = wx.ComboBox(self.panel, -1, size=(80*self.GUI_RESOLUTION, 25), choices=[''] + self.parent.T_list, style=wx.CB_DROPDOWN, name="lower bound")
self.tmax_box = wx.ComboBox(self.panel, -1, size=(80*self.GUI_RESOLUTION, 25), choices=[''] + self.parent.T_list, style=wx.CB_DROPDOWN, name="upper bound")
#color box
self.color_dict = self.parent.color_dict
self.color_box = wx.ComboBox(self.panel, -1, size=(80*self.GUI_RESOLUTION, 25), choices=[''] + self.color_dict.keys(), style=wx.TE_PROCESS_ENTER, name="color")
self.Bind(wx.EVT_TEXT_ENTER, self.add_new_color, self.color_box)
#name box
self.name_box = wx.TextCtrl(self.panel, -1, size=(80*self.GUI_RESOLUTION, 25), style=wx.HSCROLL, name="name")
#more mac stuff
h_size_buttons,button_spacing = 25,5.5
if is_mac: h_size_buttons,button_spacing = 18,0.
#buttons
self.add_all_button = wx.Button(self.panel, id=-1, label='add new fit to all specimens',size=(160*self.GUI_RESOLUTION,h_size_buttons))
self.add_all_button.SetFont(font1)
self.Bind(wx.EVT_BUTTON, self.add_fit_to_all, self.add_all_button)
self.add_fit_button = wx.Button(self.panel, id=-1, label='add fit to highlighted specimens',size=(160*self.GUI_RESOLUTION,h_size_buttons))
self.add_fit_button.SetFont(font1)
self.Bind(wx.EVT_BUTTON, self.add_highlighted_fits, self.add_fit_button)
self.delete_fit_button = wx.Button(self.panel, id=-1, label='delete highlighted fits',size=(160*self.GUI_RESOLUTION,h_size_buttons))
self.delete_fit_button.SetFont(font1)
self.Bind(wx.EVT_BUTTON, self.delete_highlighted_fits, self.delete_fit_button)
self.apply_changes_button = wx.Button(self.panel, id=-1, label='apply changes to highlighted fits',size=(160*self.GUI_RESOLUTION,h_size_buttons))
self.apply_changes_button.SetFont(font1)
self.Bind(wx.EVT_BUTTON, self.apply_changes, self.apply_changes_button)
#windows
display_window_0 = wx.GridSizer(2, 1, 10*self.GUI_RESOLUTION, 19*self.GUI_RESOLUTION)
display_window_1 = wx.GridSizer(2, 1, 10*self.GUI_RESOLUTION, 19*self.GUI_RESOLUTION)
display_window_2 = wx.GridSizer(2, 1, 10*self.GUI_RESOLUTION, 19*self.GUI_RESOLUTION)
name_window = wx.GridSizer(2, 1, 10*self.GUI_RESOLUTION, 19*self.GUI_RESOLUTION)
bounds_window = wx.GridSizer(2, 1, 10*self.GUI_RESOLUTION, 19*self.GUI_RESOLUTION)
buttons1_window = wx.GridSizer(2, 1, 10*self.GUI_RESOLUTION, 19*self.GUI_RESOLUTION)
buttons2_window = wx.GridSizer(2, 1, 10*self.GUI_RESOLUTION, 19*self.GUI_RESOLUTION)
buttons3_window = wx.GridSizer(2, 1, 10*self.GUI_RESOLUTION, 19*self.GUI_RESOLUTION)
buttons4_window = wx.GridSizer(2, 1, 10*self.GUI_RESOLUTION, 19*self.GUI_RESOLUTION)
display_window_0.AddMany( [(self.coordinates_box, wx.ALIGN_LEFT),
(self.show_box, wx.ALIGN_LEFT)] )
display_window_1.AddMany( [(self.level_box, wx.ALIGN_LEFT),
(self.mean_type_box, wx.ALIGN_LEFT)] )
display_window_2.AddMany( [(self.level_names, wx.ALIGN_LEFT),
(self.mean_fit_box, wx.ALIGN_LEFT)] )
name_window.AddMany( [(self.name_box, wx.ALIGN_LEFT),
(self.color_box, wx.ALIGN_LEFT)] )
bounds_window.AddMany( [(self.tmin_box, wx.ALIGN_LEFT),
(self.tmax_box, wx.ALIGN_LEFT)] )
buttons1_window.Add(self.add_fit_button, wx.ALIGN_TOP)
buttons2_window.Add(self.add_all_button, wx.ALIGN_TOP)
buttons3_window.Add(self.delete_fit_button, wx.ALIGN_TOP)
buttons4_window.Add(self.apply_changes_button, wx.ALIGN_TOP)
self.display_sizer.Add(display_window_0, 0, wx.TOP, 8)
self.display_sizer.Add(display_window_1, 0, wx.TOP | wx.LEFT, 8)
self.display_sizer.Add(display_window_2, 0, wx.TOP | wx.LEFT, 8)
self.name_sizer.Add(name_window, 0, wx.TOP, 5.5)
self.bounds_sizer.Add(bounds_window, 0, wx.TOP, 5.5)
self.buttons_sizer.Add(buttons1_window, 0, wx.TOP, button_spacing)
self.buttons_sizer.Add(buttons2_window, 0, wx.TOP, button_spacing)
self.buttons_sizer.Add(buttons3_window, 0, wx.TOP, button_spacing)
self.buttons_sizer.Add(buttons4_window, 0, wx.TOP, button_spacing)
#duplicate higher levels plot
self.fig = copy(self.parent.fig4)
self.canvas = FigCanvas(self.panel, -1, self.fig)
self.toolbar = NavigationToolbar(self.canvas)
self.toolbar.Hide()
self.toolbar.zoom()
self.higher_EA_setting = "Zoom"
self.canvas.Bind(wx.EVT_LEFT_DCLICK,self.parent.on_equalarea_higher_select)
self.canvas.Bind(wx.EVT_MOTION,self.on_change_higher_mouse_cursor)
self.canvas.Bind(wx.EVT_MIDDLE_DOWN,self.home_higher_equalarea)
#Higher Level Statistics Box
self.stats_sizer = wx.StaticBoxSizer( wx.StaticBox( self.panel, wx.ID_ANY,"mean statistics" ), wx.VERTICAL)
for parameter in ['mean_type','dec','inc','alpha95','K','R','n_lines','n_planes']:
COMMAND="self.%s_window=wx.TextCtrl(self.panel,style=wx.TE_CENTER|wx.TE_READONLY,size=(75*self.GUI_RESOLUTION,25))"%parameter
exec COMMAND
COMMAND="self.%s_window.SetBackgroundColour(wx.WHITE)"%parameter
exec COMMAND
COMMAND="self.%s_window.SetFont(font2)"%parameter
exec COMMAND
COMMAND="self.%s_outer_window = wx.GridSizer(1,2,5*self.GUI_RESOLUTION,15*self.GUI_RESOLUTION)"%parameter
exec COMMAND
COMMAND="""self.%s_outer_window.AddMany([
(wx.StaticText(self.panel,label='%s',style=wx.TE_CENTER),wx.EXPAND),
(self.%s_window, wx.EXPAND)])"""%(parameter,parameter,parameter)
exec COMMAND
COMMAND="self.stats_sizer.Add(self.%s_outer_window, 0, wx.ALIGN_LEFT, 0)"%parameter
exec COMMAND
self.switch_stats_button = wx.SpinButton(self.panel, id=wx.ID_ANY, style=wx.SP_HORIZONTAL|wx.SP_ARROW_KEYS|wx.SP_WRAP, name="change stats")
self.Bind(wx.EVT_SPIN, self.on_select_stats_button,self.switch_stats_button)
#construct panel
hbox0 = wx.BoxSizer(wx.HORIZONTAL)
hbox0.Add(self.name_sizer,flag=wx.ALIGN_TOP,border=8)
hbox0.Add(self.bounds_sizer,flag=wx.ALIGN_TOP,border=8)
vbox0 = wx.BoxSizer(wx.VERTICAL)
vbox0.Add(hbox0,flag=wx.ALIGN_TOP,border=8)
vbox0.Add(self.buttons_sizer,flag=wx.ALIGN_TOP,border=8)
hbox1 = wx.BoxSizer(wx.HORIZONTAL)
hbox1.Add(vbox0,flag=wx.ALIGN_TOP,border=8)
hbox1.Add(self.stats_sizer,flag=wx.ALIGN_TOP,border=8)
hbox1.Add(self.switch_stats_button,flag=wx.ALIGN_TOP,border=8)
vbox1 = wx.BoxSizer(wx.VERTICAL)
vbox1.Add(self.display_sizer,flag=wx.ALIGN_TOP,border=8)
vbox1.Add(hbox1,flag=wx.ALIGN_TOP,border=8)
vbox1.Add(self.canvas,flag=wx.ALIGN_TOP,border=8)
vbox2 = wx.BoxSizer(wx.VERTICAL)
vbox2.Add(self.search_bar,flag=wx.ALIGN_LEFT | wx.ALIGN_BOTTOM,border=8)
vbox2.Add(self.logger,flag=wx.ALIGN_LEFT,border=8)
hbox2 = wx.BoxSizer(wx.HORIZONTAL)
hbox2.Add(vbox2,flag=wx.ALIGN_LEFT,border=8)
hbox2.Add(vbox1,flag=wx.ALIGN_TOP,border=8)
self.panel.SetSizer(hbox2)
hbox2.Fit(self)
################################Logger Functions##################################
def update_editor(self,changed_interpretation_parameters=True):
"""
updates the logger and plot on the interpretation editor window
@param: changed_interpretation_parameters -> if the logger should be whipped and completely recalculated from scratch or not (default = True)
"""
if changed_interpretation_parameters:
self.fit_list = []
self.search_choices = []
for specimen in self.specimens_list:
if specimen not in self.parent.pmag_results_data['specimens']: continue
self.fit_list += [(fit,specimen) for fit in self.parent.pmag_results_data['specimens'][specimen]]
self.logger.DeleteAllItems()
offset = 0
for i in range(len(self.fit_list)):
i -= offset
v = self.update_logger_entry(i)
if v == "s": offset += 1
#use copy so that the fig doesn't close when the editor closes
self.toolbar.home()
self.fig = copy(self.parent.fig4)
self.canvas.draw()
def update_logger_entry(self,i):
"""
helper function that given a index in this objects fit_list parameter inserts a entry at that index
@param: i -> index in fit_list to find the (specimen_name,fit object) tup that determines all the data for this logger entry.
"""
if i < len(self.fit_list):
tup = self.fit_list[i]
elif i < self.logger.GetItemCount():
self.logger.DeleteItem(i)
return
else: return
fit = tup[0]
pars = fit.get(self.parent.COORDINATE_SYSTEM)
fmin,fmax,n,ftype,dec,inc,mad = "","","","","","",""
specimen = tup[1]
name = fit.name
if 'measurement_step_min' in pars.keys(): fmin = str(fit.tmin)
if 'measurement_step_max' in pars.keys(): fmax = str(fit.tmax)
if 'specimen_n' in pars.keys(): n = str(pars['specimen_n'])
if 'calculation_type' in pars.keys(): ftype = pars['calculation_type']
if 'specimen_dec' in pars.keys(): dec = "%.1f"%pars['specimen_dec']
if 'specimen_inc' in pars.keys(): inc = "%.1f"%pars['specimen_inc']
if 'specimen_mad' in pars.keys(): mad = "%.1f"%pars['specimen_mad']
if self.search_query != "":
entry = (specimen+name+fmin+fmax+n+ftype+dec+inc+mad).replace(" ","").lower()
if self.search_query not in entry:
self.fit_list.pop(i)
if i < self.logger.GetItemCount():
self.logger.DeleteItem(i)
return "s"
for e in (specimen,name,fmin,fmax,n,ftype,dec,inc,mad):
if e not in self.search_choices:
self.search_choices.append(e)
if i < self.logger.GetItemCount():
self.logger.DeleteItem(i)
self.logger.InsertStringItem(i, str(specimen))
self.logger.SetStringItem(i, 1, name)
self.logger.SetStringItem(i, 2, fmin)
self.logger.SetStringItem(i, 3, fmax)
self.logger.SetStringItem(i, 4, n)
self.logger.SetStringItem(i, 5, ftype)
self.logger.SetStringItem(i, 6, dec)
self.logger.SetStringItem(i, 7, inc)
self.logger.SetStringItem(i, 8, mad)
self.logger.SetItemBackgroundColour(i,"WHITE")
a,b = False,False
if fit in self.parent.bad_fits:
self.logger.SetItemBackgroundColour(i,"red")
b = True
if self.parent.current_fit == fit:
self.logger.SetItemBackgroundColour(i,"LIGHT BLUE")
self.logger_focus(i)
self.current_fit_index = i
a = True
if a and b:
self.logger.SetItemBackgroundColour(i,"red")
def update_current_fit_data(self):
"""
updates the current_fit of the parent Zeq_GUI entry in the case of it's data being changed
"""
if self.current_fit_index:
self.update_logger_entry(self.current_fit_index)
def change_selected(self,new_fit):
"""
updates passed in fit or index as current fit for the editor (does not affect parent),
if no parameters are passed in it sets first fit as current and complains.
@param: new_fit -> fit object to highlight as selected
"""
if self.search_query and self.parent.current_fit not in map(lambda x: x[0], self.fit_list): return
if self.current_fit_index == None:
if not self.parent.current_fit: return
for i,(fit,specimen) in enumerate(self.fit_list):
if fit == self.parent.current_fit:
self.current_fit_index = i
break
i = 0
if isinstance(new_fit, Fit):
for i, (fit,speci) in enumerate(self.fit_list):
if fit == new_fit:
break
elif type(new_fit) is int:
i = new_fit
elif new_fit != None:
print('cannot select fit of type: ' + str(type(new_fit)))
if self.current_fit_index != None and \
len(self.fit_list) > 0 and \
self.fit_list[self.current_fit_index][0] in self.parent.bad_fits:
self.logger.SetItemBackgroundColour(self.current_fit_index,"")
else:
self.logger.SetItemBackgroundColour(self.current_fit_index,"WHITE")
self.current_fit_index = i
if self.fit_list[self.current_fit_index][0] in self.parent.bad_fits:
self.logger.SetItemBackgroundColour(self.current_fit_index,"red")
else:
self.logger.SetItemBackgroundColour(self.current_fit_index,"LIGHT BLUE")
def logger_focus(self,i,focus_shift=16):
"""
focuses the logger on an index 12 entries below i
@param: i -> index to focus on
"""
if self.logger.GetItemCount()-1 > i+focus_shift:
i += focus_shift
else:
i = self.logger.GetItemCount()-1
self.logger.Focus(i)
def OnClick_listctrl(self, event):
"""
Edits the logger and the Zeq_GUI parent object to select the fit that was newly selected by a double click
@param: event -> wx.ListCtrlEvent that triggered this function
"""
i = event.GetIndex()
if self.parent.current_fit == self.fit_list[i][0]: return
self.parent.initialize_CART_rot(self.fit_list[i][1])
si = self.parent.specimens.index(self.fit_list[i][1])
self.parent.specimens_box.SetSelection(si)
self.parent.select_specimen(self.fit_list[i][1])
self.change_selected(i)
fi = 0
while (self.parent.s == self.fit_list[i][1] and i >= 0): i,fi = (i-1,fi+1)
self.parent.update_fit_box()
self.parent.fit_box.SetSelection(fi-1)
self.parent.update_selection()
def OnRightClickListctrl(self, event):
"""
Edits the logger and the Zeq_GUI parent object so that the selected interpretation is now marked as bad
@param: event -> wx.ListCtrlEvent that triggered this function
"""
i = event.GetIndex()
fit = self.fit_list[i][0]
if fit in self.parent.bad_fits:
self.parent.bad_fits.remove(fit)
if i == self.current_fit_index:
self.logger.SetItemBackgroundColour(i,"LIGHT BLUE")
else:
self.logger.SetItemBackgroundColour(i,"WHITE")
else:
self.parent.bad_fits.append(fit)
if i == self.current_fit_index:
self.logger.SetItemBackgroundColour(i,"red")
else:
self.logger.SetItemBackgroundColour(i,"red")
self.parent.calculate_higher_levels_data()
self.parent.plot_higher_levels_data()
self.logger_focus(i)
##################################Search Bar Functions###############################
def on_enter_search_bar(self,event):
self.search_query = self.search_bar.GetValue().replace(" ","").lower()
self.update_editor(True)
# def on_complete_search_bar(self,event):
# self.search_bar.AutoComplete(self.search_choices)
###################################ComboBox Functions################################
def add_new_color(self,event):
new_color = self.color_box.GetValue()
if ':' in new_color:
color_list = new_color.split(':')
color_name = color_list[0]
color_val = map(eval, tuple(color_list[1].strip('( )').split(',')))
for val in color_val:
if val > 1 or val < 0: print("invalid RGB sequence"); return
else:
return
self.color_dict[color_name] = color_val
#clear old box
self.color_box.Clear()
#update fit box
self.color_box.SetItems([''] + self.color_dict.keys())
def on_select_coordinates(self,event):
self.parent.coordinates_box.SetStringSelection(self.coordinates_box.GetStringSelection())
self.parent.onSelect_coordinates(event)
def on_select_show_box(self,event):
"""
"""
self.parent.UPPER_LEVEL_SHOW=self.show_box.GetValue()
self.parent.calculate_higher_levels_data()
self.parent.update_selection()
def on_select_higher_level(self,event,called_by_parent=False):
"""
alters the possible entries in level_names combobox to give the user selections for which specimen interpretations to display in the logger
@param: event -> the wx.COMBOBOXEVENT that triggered this function
"""
UPPER_LEVEL=self.level_box.GetValue()
if UPPER_LEVEL=='sample':
self.level_names.SetItems(self.parent.samples)
self.level_names.SetStringSelection(self.parent.Data_hierarchy['sample_of_specimen'][self.parent.s])
if UPPER_LEVEL=='site':
self.level_names.SetItems(self.parent.sites)
self.level_names.SetStringSelection(self.parent.Data_hierarchy['site_of_specimen'][self.parent.s])
if UPPER_LEVEL=='location':
self.level_names.SetItems(self.parent.locations)
self.level_names.SetStringSelection(self.parent.Data_hierarchy['location_of_specimen'][self.parent.s])
if UPPER_LEVEL=='study':
self.level_names.SetItems(['this study'])
self.level_names.SetStringSelection('this study')
if not called_by_parent:
self.parent.level_box.SetStringSelection(UPPER_LEVEL)
self.parent.onSelect_higher_level(event,True)
self.on_select_level_name(event)
def on_select_level_name(self,event,called_by_parent=False):
"""
change this objects specimens_list to control which specimen interpretatoins are displayed in this objects logger
@param: event -> the wx.ComboBoxEvent that triggered this function
"""
high_level_name=str(self.level_names.GetValue())
if self.level_box.GetValue()=='sample':
self.specimens_list=self.parent.Data_hierarchy['samples'][high_level_name]['specimens']
elif self.level_box.GetValue()=='site':
self.specimens_list=self.parent.Data_hierarchy['sites'][high_level_name]['specimens']
elif self.level_box.GetValue()=='location':
self.specimens_list=self.parent.Data_hierarchy['locations'][high_level_name]['specimens']
elif self.level_box.GetValue()=='study':
self.specimens_list=self.parent.Data_hierarchy['study']['this study']['specimens']
if not called_by_parent:
self.parent.level_names.SetStringSelection(high_level_name)
self.parent.onSelect_level_name(event,True)
self.specimens_list.sort(cmp=specimens_comparator)
self.update_editor()
def on_select_mean_type_box(self, event):
"""
set parent Zeq_GUI to reflect change in this box and change the
@param: event -> the wx.ComboBoxEvent that triggered this function
"""
new_mean_type = self.mean_type_box.GetValue()
if new_mean_type == "None":
self.parent.clear_higher_level_pars()
self.parent.mean_type_box.SetStringSelection(new_mean_type)
self.parent.onSelect_mean_type_box(event)
def on_select_mean_fit_box(self, event):
"""
set parent Zeq_GUI to reflect the change in this box then replot the high level means plot
@param: event -> the wx.COMBOBOXEVENT that triggered this function
"""
new_mean_fit = self.mean_fit_box.GetValue()
self.parent.mean_fit_box.SetStringSelection(new_mean_fit)
self.parent.onSelect_mean_fit_box(event)
###################################Button Functions##################################
def on_select_stats_button(self,event):
"""
"""
i = self.switch_stats_button.GetValue()
self.parent.switch_stats_button.SetValue(i)
self.parent.update_higher_level_stats()
def add_highlighted_fits(self, evnet):
"""
adds a new interpretation to each specimen highlighted in logger if multiple interpretations are highlighted of the same specimen only one new interpretation is added
@param: event -> the wx.ButtonEvent that triggered this function
"""
specimens = []
next_i = self.logger.GetNextSelected(-1)
if next_i == -1: return
else:
while next_i != -1:
fit,specimen = self.fit_list[next_i]
if specimen in specimens:
next_i = self.logger.GetNextSelected(next_i)
continue
else: specimens.append(specimen)
next_i = self.logger.GetNextSelected(next_i)
for specimen in specimens:
self.add_fit_to_specimen(specimen)
self.update_editor(True)
self.parent.update_selection()
def add_fit_to_all(self,event):
for specimen in self.parent.specimens:
self.add_fit_to_specimen(specimen)
self.update_editor(True)
self.parent.update_selection()
def add_fit_to_specimen(self,specimen):
if specimen not in self.parent.pmag_results_data['specimens']:
self.parent.pmag_results_data['specimens'][specimen] = []
new_name = self.name_box.GetLineText(0)
new_color = self.color_box.GetValue()
new_tmin = self.tmin_box.GetValue()
new_tmax = self.tmax_box.GetValue()
if not new_name:
next_fit = str(len(self.parent.pmag_results_data['specimens'][specimen]) + 1)
while ("Fit " + next_fit) in map(lambda x: x.name, self.parent.pmag_results_data['specimens'][specimen]):
next_fit = str(int(next_fit) + 1)
new_name = ("Fit " + next_fit)
if not new_color:
next_fit = str(len(self.parent.pmag_results_data['specimens'][specimen]) + 1)
new_color = self.parent.colors[(int(next_fit)-1) % len(self.parent.colors)]
else: new_color = self.color_dict[new_color]
if not new_tmin: new_tmin = None
if not new_tmax: new_tmax = None
if new_name in map(lambda x: x.name, self.parent.pmag_results_data['specimens'][specimen]):
print('-E- interpretation called ' + new_name + ' already exsists for specimen ' + specimen)
return
new_fit = Fit(new_name, new_tmax, new_tmin, new_color, self.parent)
new_fit.put(specimen,self.parent.COORDINATE_SYSTEM,self.parent.get_PCA_parameters(specimen,new_fit,new_tmin,new_tmax,self.parent.COORDINATE_SYSTEM,"DE-BFL"))
self.parent.pmag_results_data['specimens'][specimen].append(new_fit)
def delete_highlighted_fits(self, event):
"""
iterates through all highlighted fits in the logger of this object and removes them from the logger and the Zeq_GUI parent object
@param: event -> the wx.ButtonEvent that triggered this function
"""
next_i = -1
deleted_items = []
while True:
next_i = self.logger.GetNextSelected(next_i)
if next_i == -1:
break
deleted_items.append(next_i)
deleted_items.sort(cmp=lambda x,y: y - x)
for item in deleted_items:
self.delete_entry(index=item)
self.parent.update_selection()
def delete_entry(self, fit = None, index = None):
"""
deletes the single item from the logger of this object that corrisponds to either the passed in fit or index. Note this function mutaits the logger of this object if deleting more than one entry be sure to pass items to delete in from highest index to lowest or else odd things can happen.
@param: fit -> Fit object to delete from this objects logger
@param: index -> integer index of the entry to delete from this objects logger
"""
if type(index) == int and not fit:
fit,specimen = self.fit_list[index]
if fit and type(index) == int:
for i, (f,s) in enumerate(self.fit_list):
if fit == f:
index,specimen = i,s
break
if index == self.current_fit_index: self.current_fit_index = None
if fit not in self.parent.pmag_results_data['specimens'][specimen]:
print("cannot remove item (entry #: " + str(index) + ") as it doesn't exist, this is a dumb bug contact devs")
self.logger.DeleteItem(index)
return
self.parent.pmag_results_data['specimens'][specimen].remove(fit)
del self.fit_list[index]
self.logger.DeleteItem(index)
def apply_changes(self, event):
"""
applies the changes in the various attribute boxes of this object to all highlighted fit objects in the logger, these changes are reflected both in this object and in the Zeq_GUI parent object.
@param: event -> the wx.ButtonEvent that triggered this function
"""
new_name = self.name_box.GetLineText(0)
new_color = self.color_box.GetValue()
new_tmin = self.tmin_box.GetValue()
new_tmax = self.tmax_box.GetValue()
next_i = -1
changed_i = []
while True:
next_i = self.logger.GetNextSelected(next_i)
if next_i == -1:
break
specimen = self.fit_list[next_i][1]
fit = self.fit_list[next_i][0]
if new_name:
if new_name not in map(lambda x: x.name, self.parent.pmag_results_data['specimens'][specimen]): fit.name = new_name
if new_color:
fit.color = self.color_dict[new_color]
#testing
not_both = True
if new_tmin and new_tmax:
if fit == self.parent.current_fit:
self.parent.tmin_box.SetStringSelection(new_tmin)
self.parent.tmax_box.SetStringSelection(new_tmax)
fit.put(specimen,self.parent.COORDINATE_SYSTEM, self.parent.get_PCA_parameters(specimen,fit,new_tmin,new_tmax,self.parent.COORDINATE_SYSTEM,fit.PCA_type))
not_both = False
if new_tmin and not_both:
if fit == self.parent.current_fit:
self.parent.tmin_box.SetStringSelection(new_tmin)
fit.put(specimen,self.parent.COORDINATE_SYSTEM, self.parent.get_PCA_parameters(specimen,fit,new_tmin,fit.tmax,self.parent.COORDINATE_SYSTEM,fit.PCA_type))
if new_tmax and not_both:
if fit == self.parent.current_fit:
self.parent.tmax_box.SetStringSelection(new_tmax)
fit.put(specimen,self.parent.COORDINATE_SYSTEM, self.parent.get_PCA_parameters(specimen,fit,fit.tmin,new_tmax,self.parent.COORDINATE_SYSTEM,fit.PCA_type))
changed_i.append(next_i)
offset = 0
for i in changed_i:
i -= offset
v = self.update_logger_entry(i)
if v == "s":
offset += 1
self.parent.update_selection()
###################################Canvas Functions##################################
def home_higher_equalarea(self,event):
"""
returns higher equal area to it's original position
@param: event -> the wx.MouseEvent that triggered the call of this function
@alters: toolbar setting
"""
self.toolbar.home()
def on_change_higher_mouse_cursor(self,event):
"""
If mouse is over data point making it selectable change the shape of the cursor
@param: event -> the wx Mouseevent for that click
"""
if self.show_box.GetValue() != "specimens": return
pos=event.GetPosition()
width, height = self.canvas.get_width_height()
pos[1] = height - pos[1]
xpick_data,ypick_data = pos
xdata_org = self.parent.higher_EA_xdata
ydata_org = self.parent.higher_EA_ydata
data_corrected = self.parent.high_level_eqarea.transData.transform(vstack([xdata_org,ydata_org]).T)
xdata,ydata = data_corrected.T
xdata = map(float,xdata)
ydata = map(float,ydata)
e = 4e0
if self.higher_EA_setting == "Zoom":
self.canvas.SetCursor(wx.StockCursor(wx.CURSOR_CROSS))
elif self.higher_EA_setting == "Pan":
self.canvas.SetCursor(wx.StockCursor(wx.CURSOR_WATCH))
else:
self.canvas.SetCursor(wx.StockCursor(wx.CURSOR_ARROW))
if not self.parent.higher_EA_xdata or not self.parent.higher_EA_ydata: return
for i,(x,y) in enumerate(zip(xdata,ydata)):
if 0 < sqrt((x-xpick_data)**2. + (y-ypick_data)**2.) < e:
self.canvas.SetCursor(wx.StockCursor(wx.CURSOR_HAND))
break
###############################Window Functions######################################
def on_close_edit_window(self, event):
"""
the function that is triggered on the close of the interpretation editor window
@param: event -> wx.WindowEvent that triggered this function
"""
self.parent.interpretation_editor_open = False
self.Destroy()
def home(self, *args):
self.parent.ResetLims()
NavigationToolbar2WxAgg.home(self, *args)
class ImageLabeler(wx.App):
'''
The Main Application Class
'''
def __init__(self, starting_image=None, image_dir=None, conf_dir=None):
wx.App.__init__(self)
self.labeler_dir = labeler.__path__[0]
self.starting_image = starting_image
self.image_dir = image_dir
# Mode that the labeler should use: single or batch
self.labeler_mode = "single"
# Frame that will contain image and grid
self.frame = wx.Frame(None, title='Image Display')
#What is the display of the monitor
self.monitor_size = wx.GetDisplaySize()
# Where does our code live
self.bin_dir = os.path.dirname(os.path.abspath(__file__))
self.CanvasPanel = wx.Panel(self.frame,
style=wx.BORDER_SUNKEN | wx.CLOSE_BOX
| wx.SYSTEM_MENU | wx.CAPTION)
self.CanvasPanel.SetBackgroundColour("dark gray")
self.frame.Bind(wx.EVT_CLOSE, self.OnFileExit)
# Intitialise the matplotlib figure
self.figure = Figure()
# Create an axes, turn off the labels and add them to the figure
self.axes = plt.Axes(self.figure, [0, 0, 1, 1])
self.axes.set_axis_off()
self.figure.add_axes(self.axes)
# Add the figure to the wxFigureCanvas
self.canvas = FigureCanvas(self.CanvasPanel, -1, self.figure)
self.toolbar = NavigationToolbar(self.canvas)
self.toolbar.Realize()
self.toolbar.Hide()
# What mode is the cursor in: bb,toolbar
self.cursor_mode = "nobb"
# Connect the mouse events to their relevant callbacks
self.canvas.mpl_connect('button_press_event', self.OnLeftDown)
self.canvas.mpl_connect('button_release_event', self.OnLeftUp)
self.canvas.mpl_connect('motion_notify_event', self.OnMotion)
self.canvas.mpl_connect('key_press_event', self.OnKeyDown)
# Lock to stop the motion event from behaving badly when the mouse isn't pressed
self.frame.pressed = False
# Setting up the file menu
filemenu = wx.Menu()
menuAbout = filemenu.Append(wx.ID_ABOUT, "&About",
"Information About This Program")
menuOpenGrid = filemenu.Append(wx.ID_FILE, "&Open Grid",
"Open File Containing Bounding Boxes")
menuOpenImage = filemenu.Append(wx.ID_OPEN, "&Open Image",
"Open Image File")
menuSaveGrid = filemenu.Append(wx.ID_SAVE, "&Save Grid",
"Save Bounding Boxes to CSV File")
menuSaveImage = filemenu.Append(wx.ID_SAVEAS, "&Save Image",
"Save Image")
menuExit = filemenu.Append(wx.ID_EXIT, "&Exit", "Exit Image Labeler")
# Setting up the models menu
configmenu = wx.Menu()
menuConfigModel = configmenu.Append(wx.ID_ABOUT, "&Models",
"Configure Custom Models")
# Creating the menubar.
menuBar = wx.MenuBar()
menuBar.Append(filemenu,
"&File") # Adding the "filemenu" to the MenuBar
menuBar.Append(configmenu, "&Config")
self.frame.SetMenuBar(
menuBar) # Adding the MenuBar to the Frame content.
# Set events for menuBar things
self.frame.Bind(wx.EVT_MENU, self.OnFileAbout, menuAbout)
self.frame.Bind(wx.EVT_MENU, self.OnFileOpen, menuOpenImage)
self.frame.Bind(wx.EVT_MENU, self.OnImportGrid, menuOpenGrid)
self.frame.Bind(wx.EVT_MENU, self.OnFileExit, menuExit)
self.frame.Bind(wx.EVT_MENU, self.OnSaveGrid, menuSaveGrid)
self.frame.Bind(wx.EVT_MENU, self.OnSaveImage, menuSaveImage)
self.frame.Bind(wx.EVT_MENU, self.OnConfigModel, menuConfigModel)
#Keep track of how many images you have displayed
self.imagecounter = 0
#Define where this program should find images
if self.image_dir == None:
self.image_dir = os.getcwd()
# Get list of image files in the image_dir
self.images_obj = get_list_files(self.image_dir)
if self.images_obj != None:
self.labeler_mode = "batch"
else:
print(
"Warning: no images found in image path or current directory.")
#What image will we be starting on
if self.starting_image != None: #use the one specified on the command line.
self.imagepath = self.starting_image
elif self.labeler_mode == "single": #Just use the default application image
print("Info: Using application default image:",
self.labeler_dir + "/image.jpg")
self.imagepath = self.labeler_dir + "/image.jpg"
elif self.labeler_mode == "batch":
print(
"Info: Starting labeler in batch mode, multiple images detected."
)
#in batch mode start with the first image
self.imagepath = self.images_obj[0]['path']
# Create Panel to display Bounding Box Coordinates
self.BBPanel = wx.Panel(self.frame,
style=wx.BORDER_SUNKEN | wx.CLOSE_BOX
| wx.SYSTEM_MENU | wx.CAPTION)
self.BBPanel.SetBackgroundColour("dark gray")
# Create the Grid to Hold the Coordinates
self.BBGrid = gridlib.Grid(self.BBPanel)
self.BBGrid.CreateGrid(100, 5)
self.BBGrid.SetColLabelValue(0, "X1")
self.BBGrid.SetColLabelValue(1, "Y1")
self.BBGrid.SetColLabelValue(2, "X2")
self.BBGrid.SetColLabelValue(3, "Y2")
self.BBGrid.SetColLabelValue(4, "Label")
BBsizer = wx.BoxSizer(wx.VERTICAL)
BBsizer.Add(self.BBGrid, 1, wx.EXPAND | wx.ALL)
# Do Some things when the mouse clicks inside of the Grid
self.BBGrid.Bind(wx.grid.EVT_GRID_SELECT_CELL, self.OnGridLeft)
# Do some things when delete key is pressed inside of the grid
self.BBGrid.Bind(wx.EVT_KEY_DOWN, self.OnGridDelete)
# Get rid of row labels
self.BBGrid.SetRowLabelSize(0)
# Set all columns to read only, except the Label column
set_grid_edit(self)
#self.BBGrid.EnableEditing(False)
self.BBPanel.SetSizer(BBsizer)
# Create Panel for Image Controls
self.ControlPanel = wx.Panel(self.frame,
style=wx.BORDER_SUNKEN | wx.CLOSE_BOX
| wx.SYSTEM_MENU | wx.CAPTION)
self.ControlBox = wx.BoxSizer(wx.VERTICAL)
self.ControlBox.Add(self.ControlPanel)
self.ControlPanel.SetBackgroundColour("dark gray")
# Create Buttons to help label image
self.button_list = []
self.selected_button = "HOME"
self.sibut = wx.Button(self.ControlPanel,
-1,
size=(50, 50),
pos=(5, 5),
name="zoom")
zoom_img = wx.Image(self.labeler_dir + '/icons/zoom.png',
wx.BITMAP_TYPE_ANY)
zoom_img = zoom_img.Scale(20, 20)
self.sibut.SetBitmap(wx.Bitmap(zoom_img))
self.sibut.Bind(wx.EVT_BUTTON, self.zoom)
self.button_list.append(self.sibut)
self.hmbut = wx.Button(self.ControlPanel,
-1,
size=(50, 50),
pos=(60, 5),
name="home")
home_img = wx.Image(self.labeler_dir + '/icons/home.png',
wx.BITMAP_TYPE_ANY)
home_img = home_img.Scale(20, 20)
self.hmbut.SetBitmap(wx.Bitmap(home_img))
self.hmbut.Bind(wx.EVT_BUTTON, self.home)
self.button_list.append(self.hmbut)
self.hibut = wx.Button(self.ControlPanel,
-1,
size=(50, 50),
pos=(115, 5),
name="pan")
pan_img = wx.Image(self.labeler_dir + '/icons/pan.png',
wx.BITMAP_TYPE_ANY)
pan_img = pan_img.Scale(20, 20)
self.hibut.SetBitmap(wx.Bitmap(pan_img))
self.hibut.Bind(wx.EVT_BUTTON, self.pan)
self.button_list.append(self.hibut)
self.plotbut = wx.Button(self.ControlPanel,
-1,
size=(50, 50),
pos=(170, 5),
name="bbox")
box_img = wx.Image(self.labeler_dir + '/icons/bbox.png',
wx.BITMAP_TYPE_ANY)
box_img = box_img.Scale(20, 20)
self.plotbut.SetBitmap(wx.Bitmap(box_img))
self.plotbut.Bind(wx.EVT_BUTTON, self.plot)
self.button_list.append(self.plotbut)
# Create Panel Controls for Dataset movement
self.BatchPanel = wx.Panel(self.frame,
style=wx.BORDER_SUNKEN | wx.CLOSE_BOX
| wx.SYSTEM_MENU | wx.CAPTION)
self.BatchBox = wx.BoxSizer(wx.VERTICAL)
self.BatchBox.Add(self.BatchPanel)
self.BatchPanel.SetBackgroundColour("dark gray")
self.prevbut = wx.Button(self.BatchPanel,
-1,
size=(50, 50),
pos=(7, 5))
box_img = wx.Image(self.labeler_dir + '/icons/left_arrow.png',
wx.BITMAP_TYPE_ANY)
box_img = box_img.Scale(20, 20)
self.prevbut.SetBitmap(wx.Bitmap(box_img))
self.prevbut.Bind(wx.EVT_BUTTON, self.prev)
self.nextbut = wx.Button(self.BatchPanel,
-1,
size=(50, 50),
pos=(60, 5))
box_img = wx.Image(self.labeler_dir + '/icons/right_arrow.png',
wx.BITMAP_TYPE_ANY)
box_img = box_img.Scale(20, 20)
self.nextbut.SetBitmap(wx.Bitmap(box_img))
self.nextbut.Bind(wx.EVT_BUTTON, self.next)
if self.labeler_mode == "single": #Disable button in single mode
self.nextbut.Disable()
self.prevbut.Disable()
# Create Panel for Grid controls
self.GridControlPanel = wx.Panel(self.frame,
style=wx.BORDER_SUNKEN | wx.CLOSE_BOX
| wx.SYSTEM_MENU | wx.CAPTION)
self.GridControlBox = wx.BoxSizer(wx.VERTICAL)
self.GridControlBox.Add(self.GridControlPanel)
self.GridControlPanel.SetBackgroundColour("dark gray")
# Button to import csv file with bounding boxes
self.imbut = wx.Button(self.GridControlPanel,
-1,
size=(50, 50),
pos=(5, 5))
imp_img = wx.Image(self.labeler_dir + '/icons/import.png',
wx.BITMAP_TYPE_ANY)
imp_img = imp_img.Scale(20, 20)
self.imbut.SetBitmap(wx.Bitmap(imp_img))
self.imbut.Bind(wx.EVT_BUTTON, self.OnImportGrid)
# Button to save grid to csv file
self.grsavebut = wx.Button(self.GridControlPanel,
-1,
size=(50, 50),
pos=(60, 5))
save_img = wx.Image(self.labeler_dir + '/icons/filesave.png',
wx.BITMAP_TYPE_ANY)
save_img = save_img.Scale(20, 20)
self.grsavebut.SetBitmap(wx.Bitmap(save_img))
self.grsavebut.Bind(wx.EVT_BUTTON, self.save_grid)
# Button to delete grid and bounding boxes
self.grdelbut = wx.Button(self.GridControlPanel,
-1,
size=(50, 50),
pos=(115, 5))
del_img = wx.Image(self.labeler_dir + '/icons/delete_all.png',
wx.BITMAP_TYPE_ANY)
del_img = del_img.Scale(20, 20)
self.grdelbut.SetBitmap(wx.Bitmap(del_img))
self.grdelbut.Bind(wx.EVT_BUTTON, self.clear_bb)
# Are we moving the rectangle or creating a new one
self.is_moving = False
# Hold list of rectangle objects
self.rect_obj_list = []
self.rect_labels = []
# A Statusbar i the bottom of the window
self.frame.CreateStatusBar()
self.frame.Show(True)
self.FirstImage()
# Frame for image transformations
self.TransFrame = TransFrame(None, self)
# Frame for image segmentation
self.SegFrame = SegmentFrame(None, self)
# Frame for configuring models
self.ModelFrame = None
def OnGridLeft(self, event):
'''
Action taken when left click happens on grid
'''
row = event.GetRow()
self.selected_rect = row
self.change_rect_color()
highlight_row(self, row)
def OnGridDelete(self, event):
'''
Delete row in grid
'''
row = self.BBGrid.GetGridCursorRow()
col = self.BBGrid.GetGridCursorCol()
if event.GetKeyCode() == wx.WXK_DELETE:
self.OnDelete()
def toggle_cursor_mode(self, button, name):
'''
Change cursor_mode between bb and rest toolbar
Hides active button
'''
for butt in self.button_list:
if button == butt:
if name == "home": # This one doesn't need to be hidden
next
else:
butt.Hide()
else:
butt.Show()
def zoom(self, event):
'''
Use Matplotlibs zoom tool
'''
self.cursor_mode = "nobb"
self.toggle_cursor_mode(self.sibut, "zoom")
self.toolbar.zoom()
# Toggle off other buttons
if self.selected_button == 'HOME':
self.toolbar.home()
elif self.selected_button == 'PAN':
self.toolbar.pan()
elif self.selected_button == 'PLOT`':
self.toolbar.plot()
self.selected_button = "ZOOM"
def toggle_off_mode(self):
'''
Turn off any button that is selected
'''
# Toggle off other buttons
if self.selected_button == 'ZOOM':
self.toolbar.zoom()
elif self.selected_button == 'PAN':
self.toolbar.pan()
elif self.selected_button == 'PLOT`':
self.toolbar.plot()
elif self.selected_button == 'HOME':
self.toolbar.home()
def home(self, event):
'''
Return view back to original position
'''
self.cursor_mode = "nobb"
self.toggle_cursor_mode(self.hmbut, "home")
self.toolbar.home()
# Reset axes so they don't get messed up when zooming
self.axes.set_xbound(0, self.image_shape[1])
self.axes.set_ybound(0, self.image_shape[0])
self.toggle_off_mode()
self.selected_button = "HOME"
def pan(self, event):
'''
Uses Matplotlibs pan tool
'''
self.cursor_mode = "nobb"
self.toggle_cursor_mode(self.hibut, "pan")
self.toolbar.pan()
self.toggle_off_mode()
self.selected_button = "PAN"
def plot(self, event):
'''
Draw a rectangle on the canvas
'''
self.cursor_mode = "bb"
self.toggle_cursor_mode(self.plotbut, "plot")
# Set Crosshair as mouse cursor.
self.toggle_off_mode()
self.selected_button = "PLOT"
def next(self, event):
'''
Move to next image
'''
self.cursor_mode = "nobb"
self.toggle_cursor_mode(self.nextbut, "next")
# Find Out which image you are currently on in self.images_obj
i = 0
for obj in self.images_obj:
if obj['path'] == self.imagepath:
self.cur_obj_num = i
break
i += 1
if self.cur_obj_num + 1 == len(self.images_obj):
self.user_error("There are no more images left to work on.")
self.cur_obj_num = 0
return 0
self.cur_obj_num += 1
# Now display the new image
self.imagepath = self.images_obj[self.cur_obj_num]['path']
self.NewImage()
def prev(self, event):
'''
Move to previous image
'''
self.cursor_mode = "nobb"
self.toggle_cursor_mode(self.prevbut, "prev")
# Find Out which image you are currently on in self.images_obj
i = 0
for obj in self.images_obj:
if obj['path'] == self.imagepath:
self.cur_obj_num = i
break
i += 1
if self.cur_obj_num == 0:
self.user_error("You are on the first image.")
return 0
self.cur_obj_num -= 1
# Now display the new image
self.imagepath = self.images_obj[self.cur_obj_num]['path']
self.NewImage()
def OnFileExit(self, event):
'''
Close every frame in the app.
'''
self.frame.Destroy()
self.TransFrame.Close()
self.SegFrame.Close()
if self.ModelFrame != None:
self.ModelFrame.Close()
def OnImportGrid(self, event):
'''
Choose CSV file with coordinates to import.
'''
with wx.FileDialog(self.frame,
"Import CSV File",
wildcard="*.csv",
style=wx.FD_OPEN) as fileDialog:
if fileDialog.ShowModal() == wx.ID_CANCEL:
return # the user changed their mind
# Get Pathname
pathname = fileDialog.GetPath()
# Read file into list
new_coords = import_grid_csv(self, pathname)
# Loop through coordinates and draw rectangle
for coord in new_coords:
self.draw_rect(coord)
self.canvas.draw()
def OnConfigModel(self, event):
self.ModelFrame = ModelFrame(None, self)
def draw_rect(self, rect):
if len(rect) > 4:
x0, y0, x1, y1, label = rect
self.rect_labels.append(label)
else:
x0, y0, x1, y1 = rect
self.rect_labels.append("")
x0 = int(x0)
y0 = int(y0)
x1 = int(x1)
y1 = int(y1)
if x0 < 0:
x0 = 0
if x1 < 0:
x1 = 0
if y0 < 0:
y0 = 0
if y1 < 0:
y1 = 0
max_height = self.image_shape[0]
max_width = self.image_shape[1]
if x0 > max_width:
x0 = max_width
if x1 > max_width:
x1 = max_width
if y0 > max_height:
y0 = max_height
if y1 > max_height:
y1 = max_height
width = int(x1) - int(x0)
height = int(y1) - int(y0)
self.rect = Rectangle((int(x0), int(y0)),
width,
height,
facecolor='None',
edgecolor='green',
linewidth='2')
self.axes.add_patch(self.rect)
self.rect_obj_list.append(self.rect)
def OnSaveGrid(self, event):
'''
Choose filename to save a CSV with grid with the coordinates.
'''
with wx.FileDialog(self.frame,
"Save CSV file",
wildcard="*.csv",
style=wx.FD_SAVE
| wx.FD_OVERWRITE_PROMPT) as fileDialog:
if fileDialog.ShowModal() == wx.ID_CANCEL:
return # the user changed their mind
# Get Pathname
pathname = fileDialog.GetPath()
# Write to that file
write_grid_csv(self, pathname)
def OnSaveImage(self, event):
'''
Choose filename to save the image.
'''
with wx.FileDialog(self.frame,
"Save an image file",
style=wx.FD_SAVE
| wx.FD_OVERWRITE_PROMPT) as fileDialog:
if fileDialog.ShowModal() == wx.ID_CANCEL:
return # the user changed their mind
# Get Pathname
imagepathname = fileDialog.GetPath()
# Write to that file
write_image(self, imagepathname)
def OnFileOpen(self, event):
'''
Open Dialog so user can select a new image.
'''
# Get the file path you wan to open.
with wx.FileDialog(self.frame,
"Open Image File",
wildcard="Image Files *.png|*.jpg",
style=wx.FD_OPEN
| wx.FD_FILE_MUST_EXIST) as fileDialog:
if fileDialog.ShowModal() == wx.ID_CANCEL:
return # the user changed their mind
# Proceed loading the file chosen by the user
pathname = fileDialog.GetPath()
self.imagepath = pathname
self.NewImage()
def OnFileAbout(self, event):
'''
Display information about the application
'''
# A message dialog box with an OK button. wx.OK is a standard ID in wxWidgets.
dlg = wx.MessageDialog(self.frame, "A GUI for labeling images",
"About Image Labeler", wx.OK)
dlg.ShowModal()
dlg.Destroy()
def OnKeyDown(self, event):
'''
Actions to be taken when a key is pressed
'''
if event.key == 'delete':
self.OnDelete()
def OnLeftDown(self, event):
'''
Actions taken when mouse button is pressed
'''
# Is the click inside a rectangle?
found = 0
current_x = event.xdata
current_y = event.ydata
for i in range(len(self.rect_obj_list)):
rect = self.rect_obj_list[i]
result = check_inside_rect((current_x, current_y), rect)
if result == 1:
self.selected_rect = i
found += 1
# We want to select this rectangle, and move it
if found > 0:
self.is_moving = True
self.change_rect_color()
self.selected_rect_obj = self.rect_obj_list[self.selected_rect]
self.x0, self.y0 = self.selected_rect_obj.xy
self.x1 = None
self.y1 = None
self.press = self.x0, self.y0, event.xdata, event.ydata
return 0
if self.cursor_mode == "nobb":
return 0
# If the above is not satisified, it is time to draw a new rectangle
# Initialise the rectangle
self.rect = Rectangle((0, 0),
1,
1,
facecolor='None',
edgecolor='green',
linewidth='2')
self.x0 = None
self.y0 = None
self.x1 = None
self.y1 = None
self.axes.add_patch(self.rect)
# Check the mouse press was actually on the canvas
if event.xdata is not None and event.ydata is not None:
# Upon initial press of the mouse record the origin and record the mouse as pressed
self.frame.pressed = True
self.rect.set_linestyle('dashed')
self.x0 = event.xdata
self.y0 = event.ydata
def OnMotion(self, event):
'''
Action taken when mouse movement happens over the canvas
'''
# If a rectangle is selected and needs to be moved
if self.is_moving == True:
if event.xdata is not None and event.ydata is not None:
if self.press is None: return
self.x0, self.y0, xpress, ypress = self.press
dx = event.xdata - xpress
dy = event.ydata - ypress
self.x1 = self.x0 + dx
self.y1 = self.y0 + dy
self.selected_rect_obj.set_x(self.x1)
self.selected_rect_obj.set_y(self.y1)
self.selected_rect_obj.figure.canvas.draw()
return 0
# If the mouse has been pressed draw an updated rectangle when the mouse is
# moved so the user can see what the current selection is
elif self.frame.pressed:
# Check the mouse was released on the canvas,
# and if it wasn't then just leave the width and
# height as the last values set by the motion event
if event.xdata is not None and event.ydata is not None:
self.x1 = event.xdata
self.y1 = event.ydata
# Set the width and height and draw the rectangle
self.rect.set_width(self.x1 - self.x0)
self.rect.set_height(self.y1 - self.y0)
self.rect.set_xy((self.x0, self.y0))
self.canvas.draw()
def OnLeftUp(self, event):
'''
Actions taken with mouse button is released
'''
# Rectangle has finished moving and objects need to be updated.
if self.is_moving == True:
x0 = self.selected_rect_obj.get_bbox().x0
y0 = self.selected_rect_obj.get_bbox().y0
x1 = self.selected_rect_obj.get_bbox().x1
y1 = self.selected_rect_obj.get_bbox().y1
self.selected_rect_obj.figure.canvas.draw()
self.is_moving = False
self.press = None
# Update Grid with new coordinates
fill_grid(self)
return 0
# A new rectangle is finished being drawn
elif self.frame.pressed:
# Upon release draw the rectangle as a solid rectangle
self.frame.pressed = False
self.rect.set_linestyle('solid')
# Check the mouse was released on the canvas, and if it wasn't then
# just leave the width and height as the last values set by the motion event
if event.xdata is not None and event.ydata is not None:
self.x1 = event.xdata
self.y1 = event.ydata
# Set the width and height and origin of the bounding rectangle
self.boundingRectWidth = self.x1 - self.x0
self.boundingRectHeight = self.y1 - self.y0
self.bouningRectOrigin = (self.x0, self.y0)
# Draw the bounding rectangle
self.rect.set_width(self.boundingRectWidth)
self.rect.set_height(self.boundingRectHeight)
self.rect.set_xy((self.x0, self.y0))
self.canvas.draw()
# Keep list of rect objects
self.rect_obj_list.append(self.rect)
self.rect_labels.append("")
# Fill the grid with the bounding boxes
fill_grid(self)
def NewImage(self):
'''
A new image needs to be read in, and various objects need to be cleaned up.
'''
# Delete all rectangles from the canvas
self.clear_bb()
# Uncheck all transformation boxes
self.TransFrame.reset_boxes()
# Clear Rectangle List
self.rect_obj_list = []
self.rect_labels = []
# Read image into original_image and current_image
self.ReadImage()
# Refresh the canvas
self.RefreshImage()
def ReadImage(self):
'''
Read image off disk
'''
self.original_image = cv2.imread(self.imagepath)
#Matplotlib is RGB, opencv is BGR
self.original_image = cv2.cvtColor(self.original_image,
cv2.COLOR_BGR2RGB)
self.current_image = self.original_image.copy()
self.image_shape = self.current_image.shape
def FirstImage(self):
'''
The very first image is handled differently
'''
# Read image into the original_image and current_image
self.ReadImage()
# Set Frame to size of image, plust a little extra
self.frame.SetSize(
(self.image_shape[1] + 550, self.image_shape[0] + 200))
self.set_panels()
# Display the image on the canvas
self.img_obj = self.axes.imshow(self.current_image, cmap='gray')
self.canvas.draw()
def RefreshImage(self):
'''
Display new image to Matplotlib canvas and tiddy up
'''
# Set Frame to size of image, plust a little extra
self.frame.SetSize(
(self.image_shape[1] + 550, self.image_shape[0] + 200))
self.set_panels()
# Display the image on the canvas
self.img_obj.set_extent(
(0.0, self.image_shape[1], self.image_shape[0], 0.0))
self.BasicRefresh()
def BasicRefresh(self):
self.img_obj.set_data(self.current_image)
self.canvas.draw()
def OnDelete(self):
'''
Delete the selected rectangle
'''
# Don't try to delete if empty
if len(self.rect_obj_list) < 1:
self.user_error("There is nothing to delete.")
return 1
try:
self.selected_rect
except:
self.user_error("You haven't selected a rectangle yet.")
return 1
rectangle = self.rect_obj_list[self.selected_rect]
# Remove object from list
self.rect_obj_list.remove(rectangle)
del self.rect_labels[self.selected_rect]
# Remove object from canvas
rectangle.remove()
# Remove coordinates from grid
self.BBGrid.DeleteRows(self.selected_rect)
# redraw the canvas
self.canvas.draw()
# clear
del self.selected_rect
def change_rect_color(self):
'''
change the line color of currently selected rectangle
'''
# Set selected rectangle line color black
if len(self.rect_obj_list) < 1:
return 0
rect = self.rect_obj_list[self.selected_rect]
#set everything back to green
for i in range(len(self.rect_obj_list)):
rect = self.rect_obj_list[i]
# Set currently selected rect line as black
if i == self.selected_rect:
rect.set_edgecolor('red')
else: # Set everything else as green
rect.set_edgecolor('green')
# Also highlight row in grid
highlight_row(self, self.selected_rect)
self.canvas.draw()
def clear_bb(self, event=None):
'''
Remove all rectangles and empty grid
'''
for rectangle in self.rect_obj_list:
# Remove object from canvas
rectangle.remove()
empty_grid(self)
# Set the list back to empty
self.rect_obj_list = []
self.rect_labels = []
# redraw the canvas
self.canvas.draw()
def set_panels(self):
'''
Set the size and position of the pannels based on the images size.
'''
grid_width = 425
control_height = 70
img_pane_max_width = self.monitor_size[0] - grid_width - 10
img_pane_max_height = self.monitor_size[1] - control_height - 120
#Set some common sense things in relation to image widths
if self.image_shape[1] < 525:
img_pane_width = 525
elif self.image_shape[1] > img_pane_max_width:
img_pane_width = img_pane_max_width
else:
img_pane_width = self.image_shape[1]
#Set some common sense things in relation to image height
if self.image_shape[0] < 525:
img_pane_height = 525
elif self.image_shape[0] > img_pane_max_height:
img_pane_height = img_pane_max_height
else:
img_pane_height = self.image_shape[0]
#Come up with what the frame size should be
frame_width = img_pane_width + grid_width + 10
frame_height = img_pane_height + control_height + 90
self.CanvasPanel.SetPosition((0, 0))
self.CanvasPanel.SetSize((img_pane_width, img_pane_height))
self.ControlPanel.SetPosition((0, img_pane_height + 5))
self.ControlPanel.SetSize((235, control_height))
self.BatchPanel.SetPosition((240, img_pane_height + 5))
self.BatchPanel.SetSize((125, control_height))
self.BBPanel.SetPosition((img_pane_width + 5, 0))
self.BBPanel.SetSize((grid_width, img_pane_height))
self.GridControlPanel.SetPosition(
(img_pane_width + 5, img_pane_height + 5))
self.GridControlPanel.SetSize((grid_width, control_height))
#Set Overall frame size
self.frame.SetSize((frame_width, frame_height))
self.canvas.SetSize((self.image_shape[1], self.image_shape[0]))
# Reset axes so they don't get messed up when zooming
self.axes.set_ybound(0, self.image_shape[0])
self.axes.set_xbound(0, self.image_shape[1])
def save_grid(self, event):
'''
Save the selected bounding boxes to some file, database,etc
'''
if len(self.rect_obj_list) < 1:
self.user_error("You haven't selected a single bounding box yet.")
return 1
else:
write_grid_csv(self)
return 0
def user_info(self, message):
wx.MessageBox(message, 'Info', wx.OK)
def user_error(self, message):
wx.MessageBox(message, 'Error', wx.ICON_ERROR | wx.OK)
