def __init__(self):
super().__init__()
main_layout = QW.QVBoxLayout(self)
figure = Figure()
figure.set_frameon(False)
self.canvas = FigureCanvas(figure)
self.canvas.setStyleSheet("background-color:transparent;")
self.axis = self.canvas.figure.add_axes([0, 0.05, 0.2, 0.9])
self.upperTextBox = QW.QLineEdit()
self.lowerTextBox = QW.QLineEdit()
main_layout.addWidget(self.upperTextBox)
main_layout.addWidget(self.canvas)
main_layout.addWidget(self.lowerTextBox)
self.upperTextBox.returnPressed.connect(self._update_bounds)
self.lowerTextBox.returnPressed.connect(self._update_bounds)
#: Colour bar limits
self.bounds = [numpy.nan, numpy.nan]
self.setFixedWidth(80)
def get_dataselection_layout(self):
self.dataselection = QtWidgets.QGroupBox('Data selection')
# range
self.r = []
for idx, label in enumerate(['X: ', 'Y: ', 'Channel: ']):
self.r.append(QtWidgets.QLabel(label, self))
self.r.append(
QtWidgets.QLineEdit('{:4d}'.format(self.range[idx][0]), self))
self.r.append(QtWidgets.QLabel(' to ', self))
self.r.append(
QtWidgets.QLineEdit('{:4d}'.format(self.range[idx][1]), self))
# go button
self.slicebutton = QtWidgets.QPushButton('Slice', self)
self.slicebutton.clicked.connect(self.update_dataselection)
# create layout
layout = QtWidgets.QGridLayout()
for idx in np.arange(3):
layout.addWidget(self.r[4 * idx], idx, 0)
layout.addWidget(self.r[4 * idx + 1], idx, 1)
layout.addWidget(self.r[4 * idx + 2], idx, 2)
layout.addWidget(self.r[4 * idx + 3], idx, 3)
layout.addWidget(self.slicebutton, 3, 0, 1, 4)
self.dataselection.setLayout(layout)
def get_Galtemplate_layout(self):
self.Galtemplate = QtWidgets.QGroupBox('Galaxy Template')
self.Galplot = QtWidgets.QCheckBox('Plot template', self)
self.Galz_label = QtWidgets.QLabel('z = ', self)
self.Galz = QtWidgets.QLineEdit('{:5.4f}'.format(self.z[1]), self)
self.Galcolor_label = QtWidgets.QLabel('Color: ', self)
self.Galcolor = QtWidgets.QLineEdit(self.linecolor[1], self)
self.Galscale_label = QtWidgets.QLabel('Scale factor: ', self)
self.Galscale = QtWidgets.QLineEdit('{:5.2f}'.format(
self.linescale[1], self))
self.Gallabels = QtWidgets.QCheckBox('Plot labels', self)
self.Galplot.stateChanged.connect(self.update_figures)
self.Galz.returnPressed.connect(self.update_redshifts)
self.Galcolor.returnPressed.connect(self.update_linecolors)
self.Galscale.returnPressed.connect(self.update_linescales)
self.Gallabels.stateChanged.connect(self.update_figures)
# the layout
layout = QtWidgets.QGridLayout()
layout.addWidget(self.Galplot, 0, 0, 1, 2)
layout.addWidget(self.Gallabels, 0, 2, 1, 2)
layout.addWidget(self.Galz_label, 1, 0, 1, 1)
layout.addWidget(self.Galz, 1, 1, 1, 1)
layout.addWidget(self.Galscale_label, 1, 2, 1, 1)
layout.addWidget(self.Galscale, 1, 3, 1, 1)
layout.addWidget(self.Galcolor_label, 2, 0, 1, 1)
layout.addWidget(self.Galcolor, 2, 1, 1, 1)
self.Galtemplate.setLayout(layout)
def get_canvas2_layout(self):
self.canvas2 = QtWidgets.QGroupBox('Canvas 2')
# canvas 2
self.fig2 = FigureCanvas(Figure(figsize=(0.5, 1.5)))
self._ax2 = self.fig2.figure.subplots()
self.fig2.figure.subplots_adjust(0.15, 0.19, 0.95, 0.95)
# range of canvas 2
self.r2 = []
for idx, label in enumerate(['X range: ', 'Y range: ']):
self.r2.append(QtWidgets.QLabel(label, self))
self.r2.append(
QtWidgets.QLineEdit('{:4.3f}'.format(self.range2[idx][0]),
self))
self.r2.append(QtWidgets.QLabel(' to ', self))
self.r2.append(
QtWidgets.QLineEdit('{:4.3f}'.format(self.range2[idx][1]),
self))
for idx in np.arange(1, 9, 2):
self.r2[idx].returnPressed.connect(self.update_range2)
# go button
self.updaterange2button = QtWidgets.QPushButton('Update Range', self)
self.updaterange2button.clicked.connect(self.update_range2)
# the layout
layout = QtWidgets.QGridLayout()
layout.addWidget(self.fig2, 0, 0, 1, 9)
for idx in np.arange(8):
layout.addWidget(self.r2[idx], 1, idx)
layout.addWidget(self.updaterange2button, 1, 8)
self.canvas2.setLayout(layout)
def __init__(self, parent=None):
super(Page3, self).__init__(parent)
integerValidator = QtGui.QIntValidator(0, 10, self)
coordLabel = QtWidgets.QLabel('Coordinate File:')
self.coordLine = QtWidgets.QLineEdit()
coordBtn = QtWidgets.QPushButton('File', self)
coordBtn.clicked.connect(self.getCoordfile)
self.registerField('coordFile*', self.coordLine)
popLabel = QtWidgets.QLabel('Population File:')
self.popLine = QtWidgets.QLineEdit()
popBtn = QtWidgets.QPushButton('File', self)
popBtn.clicked.connect(self.getPopfile)
self.registerField('popFile*', self.popLine)
grid = QtWidgets.QGridLayout()
grid.setSpacing(10)
grid.addWidget(coordLabel, 1, 0)
grid.addWidget(self.coordLine, 1, 1)
grid.addWidget(coordBtn, 1, 2)
grid.addWidget(popLabel, 2, 0)
grid.addWidget(self.popLine, 2, 1)
grid.addWidget(popBtn, 2, 2)
self.setLayout(grid)
def __init__(self, parent=None, line=None):
super(CurvePropertiesDialog, self).__init__(parent)
self.line = line
#labels
self._label_color = QtWidgets.QLabel('Color')
self._label_symbol = QtWidgets.QLabel('Symbol')
#text inputs
self._edit_color = QtWidgets.QLineEdit()
self._edit_symbol = QtWidgets.QLineEdit()
#buttons
self._btn_ok = QtWidgets.QPushButton('OK')
self._btn_cancel = QtWidgets.QPushButton('Cancel')
#layout
grid = QtWidgets.QGridLayout()
self.setLayout(grid)
grid.addWidget(self._label_color, 0, 0)
grid.addWidget(self._edit_color, 0, 1)
grid.addWidget(self._label_symbol, 1, 0)
grid.addWidget(self._edit_symbol, 1, 1)
grid.addWidget(self._btn_ok, 2, 0)
grid.addWidget(self._btn_cancel, 2, 1)
#connections
self._btn_ok.clicked.connect(self.process_inputs)
self._btn_cancel.clicked.connect(self.close)
self.update_from_line(self.line)
def __init__(self, l, r, u, d, parent=None):
""""""
QtWidgets.QDialog.__init__(self, parent)
self.setWindowTitle('Set Heatmap Domain')
self.setWindowIcon(QtGui.QIcon('kiwi.png'))
self.setMinimumWidth(400)
self.header = QtWidgets.QLabel("All distances are relative to the array center.")
self.leftLabel = QtWidgets.QLabel("Left/West:")
self.lledit = QtWidgets.QLineEdit(self)
self.lledit.setText(str(l))
self.rightLabel = QtWidgets.QLabel("Right/East:")
self.rledit = QtWidgets.QLineEdit(self)
self.rledit.setText(str(r))
self.upLabel = QtWidgets.QLabel("Up/North:")
self.uledit = QtWidgets.QLineEdit(self)
self.uledit.setText(str(u))
self.downLabel = QtWidgets.QLabel("Down/South:")
self.dledit = QtWidgets.QLineEdit(self)
self.dledit.setText(str(d))
self.activate = QtWidgets.QPushButton("Set")
Box = QtWidgets.QVBoxLayout()
Box.addWidget(self.header)
left = QtWidgets.QHBoxLayout()
left.addWidget(self.leftLabel)
left.addWidget(self.lledit)
right = QtWidgets.QHBoxLayout()
right.addWidget(self.rightLabel)
right.addWidget(self.rledit)
up = QtWidgets.QHBoxLayout()
up.addWidget(self.upLabel)
up.addWidget(self.uledit)
down = QtWidgets.QHBoxLayout()
down.addWidget(self.downLabel)
down.addWidget(self.dledit)
Box.addLayout(left)
Box.addLayout(right)
Box.addLayout(up)
Box.addLayout(down)
Box.addWidget(self.activate)
# Now put everything into the frame
self.setLayout(Box)
def __init__(self, parent=None):
super(Page1, self).__init__(parent)
integerValidator = QtGui.QIntValidator(0, 100, self)
coordLabel = QtWidgets.QLabel('Coordinate File:')
self.coordLine = QtWidgets.QLineEdit()
coordBtn = QtWidgets.QPushButton('File', self)
coordBtn.clicked.connect(self.getCoordfile)
self.registerField('coordFile*', self.coordLine)
popLabel = QtWidgets.QLabel('Population File:')
self.popLine = QtWidgets.QLineEdit()
popBtn = QtWidgets.QPushButton('File', self)
popBtn.clicked.connect(self.getPopfile)
self.registerField('popFile*', self.popLine)
dataLabel = QtWidgets.QLabel('Data Directory:')
self.dataLine = QtWidgets.QLineEdit()
dataBtn = QtWidgets.QPushButton('File', self)
dataBtn.clicked.connect(self.getDir)
self.registerField('dataDir*', self.dataLine)
allelesLabel = QtWidgets.QLabel('Number of alleles:')
self.allelesLine = QtWidgets.QLineEdit()
self.allelesLine.setValidator(integerValidator)
self.registerField('alleleCount*', self.allelesLine)
groupsLabel = QtWidgets.QLabel('Number of Groups:')
self.groupsLine = QtWidgets.QLineEdit()
self.groupsLine.setValidator(integerValidator)
self.registerField('groupCount*', self.groupsLine)
grid = QtWidgets.QGridLayout()
grid.setSpacing(10)
grid.addWidget(coordLabel, 1, 0)
grid.addWidget(self.coordLine, 1, 1)
grid.addWidget(coordBtn, 1, 2)
grid.addWidget(popLabel, 2, 0)
grid.addWidget(self.popLine, 2, 1)
grid.addWidget(popBtn, 2, 2)
grid.addWidget(dataLabel, 3, 0)
grid.addWidget(self.dataLine, 3, 1)
grid.addWidget(dataBtn, 3, 2)
grid.addWidget(allelesLabel, 4, 0)
grid.addWidget(self.allelesLine, 4, 1)
grid.addWidget(groupsLabel, 5, 0)
grid.addWidget(self.groupsLine, 5, 1)
self.setLayout(grid)
def __init__(self, dimension):
"""
Construct the widget
Args:
dimension: xarray.DataArray
"""
super().__init__()
main_layout = QW.QHBoxLayout(self)
#: The dimension represented by this widget
self.dimension = dimension
self.title = QW.QLabel(dimension.name)
self.textbox = QW.QLineEdit()
self.slider = QW.QSlider(orientation=QtCore.Qt.Horizontal)
self.slider.setMinimum(0)
self.slider.setMaximum(dimension.size - 1)
self.slider.valueChanged.connect(self._update_from_slider)
self.textbox.returnPressed.connect(self._update_from_value)
self.slider.setValue(0)
self.textbox.setText(str(self.dimension[0].values))
main_layout.addWidget(self.title)
main_layout.addWidget(self.textbox)
main_layout.addWidget(self.slider)
def __init__(self,
db,
fig_dispatch,
text_dispatch,
result_dispatch,
*,
max_results=100):
self.db = db
self._hvw = HeaderViewerWidget(fig_dispatch, text_dispatch)
self.fig_dispatch = fig_dispatch
self.text_dispatch = text_dispatch
self.result_dispatch = result_dispatch
self.max_results = max_results
self._results_summary = QtWidgets.QLabel()
self._results = QtWidgets.QListWidget()
self._results.currentItemChanged.connect(
self._on_results_selection_changed)
self._search_bar = QtWidgets.QLineEdit()
self._search_bar.textChanged.connect(self._on_search_text_changed)
self.widget = QtWidgets.QWidget()
layout = QtWidgets.QVBoxLayout()
sublayout = QtWidgets.QHBoxLayout()
results_pane = QtWidgets.QVBoxLayout()
results_pane.addWidget(self._results_summary)
results_pane.addWidget(self._results)
layout.addWidget(self._search_bar)
layout.addLayout(sublayout)
sublayout.addLayout(results_pane)
sublayout.addWidget(self._hvw.widget)
self.widget.setLayout(layout)
self.search()
def get_chanselect_layout(self):
self.chanselect = QtWidgets.QGroupBox('Channel Select Controls')
# create the channel slider
self.channelslider = QtWidgets.QScrollBar(QtCore.Qt.Horizontal, self)
self.channelslider.setRange(0, self.nchannels - 1)
self.channelslider.valueChanged.connect(self.channelslider_changed)
# define the channel text box
self.channeltext_label = QtWidgets.QLabel(self)
self.channeltext_label.setText('Channel: ')
self.channeltext = QtWidgets.QLineEdit(str(self.channel), self)
self.channeltext.setToolTip('The channel number you want to display')
self.channeltext.returnPressed.connect(self.channeltext_changed)
# RMS value
self.rms = QtWidgets.QLabel(self)
self.rms.setText('RMS value: {:10.7f}'.format(self.rmsval))
# layout
layout = QtWidgets.QGridLayout()
layout.addWidget(self.channeltext_label, 0, 0)
layout.addWidget(self.channeltext, 0, 1)
layout.addWidget(self.channelslider, 1, 0, 1, 2)
layout.addWidget(self.rms, 2, 0, 1, 2)
self.chanselect.setLayout(layout)
def __init__(self, name, props, default=None):
super(TextParam, self).__init__(name, props)
self.setLayout( QtWidgets.QHBoxLayout() )
self.lineedit = QtWidgets.QLineEdit()
self.layout().addWidget(self.lineedit)
self.set_value(default or props['default'])
self.lineedit.editingFinished.connect(self.update)
def __init__(self, name, props):
super(SliderParam, self).__init__(name, props)
self.setLayout( QtWidgets.QHBoxLayout() )
self.slider = QtWidgets.QSlider()
self.slider.setMouseTracking(False)
self.slider.setProperty("value", 0)
self.slider.setOrientation(QtCore.Qt.Horizontal)
self.slider.setInvertedAppearance(False)
self.slider.setInvertedControls(False)
self.slider.setTickPosition(QtWidgets.QSlider.TicksAbove)
self.slider.setTickInterval(5)
self.value_edit = QtWidgets.QLineEdit('0')
self.value_edit.setMinimumSize(QtCore.QSize(20, 0))
self.value_edit.setMaximumWidth(100)
self.value_edit.setAlignment(
QtCore.Qt.AlignRight |
QtCore.Qt.AlignTrailing |
QtCore.Qt.AlignVCenter)
self.layout().addWidget(self.slider, stretch=4)
self.layout().addWidget(self.value_edit, stretch=1)
self.slider.valueChanged.connect(self.on_slider_changed)
self.value_edit.editingFinished.connect(self.on_box_changed)
start_value = self.props['default']
limits = get_reasonable_range_limits(start_value)
self.set_minimum(limits[0])
self.set_maximum(limits[1])
self.set_value(start_value)
def get_moment_layout(self):
self.moment = QtWidgets.QGroupBox('Moment')
# The moment range boxes
self.mr = []
self.mr.append(QtWidgets.QLabel('Channel:', self))
self.mr.append(
QtWidgets.QLineEdit('{:4d}'.format(self.range[2][0]), self))
self.mr.append(QtWidgets.QLabel(' to ', self))
self.mr.append(
QtWidgets.QLineEdit('{:4d}'.format(self.range[2][1]), self))
# The mask buttons
self.momentmask = []
masklabel = [
'Use mask for moment-0 with values above RMS of: ',
'Use mask for moment-1 with values above RMS of: ',
'Use mask for moment-2 with values above RMS of: '
]
for label in masklabel:
self.momentmask.append(QtWidgets.QCheckBox(label))
self.momentmaskvalue = []
for mmval in self.mmaskval:
self.momentmaskvalue.append(
QtWidgets.QLineEdit('{:10.7f}'.format(mmval), self))
# Gaussian moment plot
self.gaussianmoment = QtWidgets.QCheckBox('Gaussian moment')
self.gaussianmoment.setChecked(False)
# update moment button
self.momentbutton = QtWidgets.QPushButton('Calculate Moments', self)
self.momentbutton.clicked.connect(self.get_moments)
# create layout
layout = QtWidgets.QGridLayout()
for idx in np.arange(4):
layout.addWidget(self.mr[idx], 0, idx)
for idx in np.arange(3):
layout.addWidget(self.momentmask[idx], idx + 1, 0, 1, 3)
layout.addWidget(self.momentmaskvalue[idx], idx + 1, 3)
layout.addWidget(self.gaussianmoment, 4, 0, 1, 4)
layout.addWidget(self.momentbutton, 5, 0, 1, 4)
self.moment.setLayout(layout)
def __init__(self, parent=None):
super(StartP, self).__init__(parent)
integerValidator = QtGui.QIntValidator(0, 300, self)
dataLabel = QtWidgets.QLabel('Data Directory:')
self.dataLine = QtWidgets.QLineEdit()
dataBtn = QtWidgets.QPushButton('File', self)
dataBtn.clicked.connect(self.getDir)
self.registerField('dataDir*', self.dataLine)
allelesLabel = QtWidgets.QLabel('Number of alleles:')
self.allelesLine = QtWidgets.QLineEdit()
self.allelesLine.setValidator(integerValidator)
self.registerField('alleleCount*', self.allelesLine)
groupsLabel = QtWidgets.QLabel('Number of Groups:')
self.groupsLine = QtWidgets.QLineEdit()
self.groupsLine.setValidator(integerValidator)
self.registerField('groupCount*', self.groupsLine)
self.b1 = QtWidgets.QCheckBox("Females")
self.b1.setChecked(False)
self.registerField('females', self.b1)
comboLabel = QtWidgets.QLabel('Graphic Type:')
self.combo = QtWidgets.QComboBox(self)
self.combo.addItem('Allele Counts')
self.combo.addItem('Allele Heatmap')
self.combo.addItem('Allele Stack')
self.combo.addItem('Allele Geo-Map')
self.registerField('graphic', self.combo)
grid = QtWidgets.QGridLayout()
grid.setSpacing(10)
grid.addWidget(dataLabel, 1, 0)
grid.addWidget(self.dataLine, 1, 1)
grid.addWidget(dataBtn, 1, 2)
grid.addWidget(allelesLabel, 2, 0)
grid.addWidget(self.allelesLine, 2, 1)
grid.addWidget(groupsLabel, 3, 0)
grid.addWidget(self.groupsLine, 3, 1)
grid.addWidget(self.b1, 5, 1)
grid.addWidget(comboLabel, 4, 0)
grid.addWidget(self.combo, 4, 1)
self.setLayout(grid)
def __controls(self):
#Quit Button
self.btnQuit = QtWidgets.QPushButton('Quit', self)
self.btnQuit.setToolTip('Quit from PyTrack')
self.btnQuit.clicked.connect(self.parent.close)
#Label stupida
self.lblinfo = QtWidgets.QLabel(' ',self)
self.lblinfo.setToolTip('http://esss.se')
self.lblinfo.setPixmap(QtGui.QPixmap('ESS_Logo.png'))
#Take a measurement
self.btnStart = QtWidgets.QPushButton('Start',self)
self.btnStart.clicked.connect(self.Start)
self.btnStop = QtWidgets.QPushButton('Stop',self)
self.btnStop.clicked.connect(self.Stop)
#Label for Messages
self.lblMessages=QtWidgets.QLabel('Press button to start',self)
self.lblAuthors=QtWidgets.QLabel('MuYuan 2019\nSRF Section\nLinac Group\nAcceleration Division')
self.lblAuthors.setAlignment(QtCore.Qt.AlignCenter)
self.lblAuthors.setFont(QtGui.QFont('',10))
#puts a canvas object here
self.PSensorPlot=PSensorCanvas(self, width=5, height=3.5, dpi=144)
self.PSensorPlot.setToolTip('IOC Measurement')
#time message
self.lblTimeMessages=QtWidgets.QLabel(time.strftime("%d-%m-%Y %H:%M:%S",time.localtime(time.time())),self)
#other controls
self.lblOperator=QtWidgets.QLabel('Operator',self)
self.txtOperator=QtWidgets.QLineEdit(self)
self.txtOperator.setText('SRF Team')
self.txtOperator.setFixedWidth(100)
self.lblLocation=QtWidgets.QLabel('Location',self)
self.txtLocation=QtWidgets.QLineEdit(self)
self.txtLocation.setText('SRF Laboratory')
self.lblComments=QtWidgets.QLabel('Comments',self)
self.txtComments=QtWidgets.QLineEdit(self)
self.txtComments.setText('IOC waveform measurement')
self.txtComments.setFixedWidth(300)
self.lblScanInterval=QtWidgets.QLabel('Interval:',self)
self.txtScanInterval=QtWidgets.QLineEdit(self)
self.txtScanInterval.setText('1')
self.txtScanInterval.setFixedWidth(40)
self.lblUnit=QtWidgets.QLabel('s',self)
self.btnInterval=QtWidgets.QPushButton('Apply',self)
self.btnInterval.setEnabled(True)
self.btnInterval.clicked.connect(self.setInterval)
def __init__(self,parent=None,selected=None,raw_adc=False,raw_time=False,pedestal=None,distribute=None,fft=False,**ignored):
super().__init__(parent)
self._layout = QtWidgets.QVBoxLayout(self)
self.set_selected(selected)
self.fft_checkbox = QtWidgets.QCheckBox('Plot FFT')
self.fft_checkbox.setCheckState(QtCore.Qt.Checked if fft else QtCore.Qt.Unchecked)
self._layout.addWidget(self.fft_checkbox)
self.raw_checkbox = QtWidgets.QCheckBox('Plot raw ADC counts')
self.raw_checkbox.setCheckState(QtCore.Qt.Checked if raw_adc else QtCore.Qt.Unchecked)
self._layout.addWidget(self.raw_checkbox)
self.raw_time_checkbox = QtWidgets.QCheckBox('Plot sample index')
self.raw_time_checkbox.setCheckState(QtCore.Qt.Checked if raw_time else QtCore.Qt.Unchecked)
self._layout.addWidget(self.raw_time_checkbox)
redist_layout = QtWidgets.QHBoxLayout()
self.redist_checkbox = QtWidgets.QCheckBox('Redistribute signals')
self.redist_checkbox.setCheckState(QtCore.Qt.Checked if distribute else QtCore.Qt.Unchecked)
redist_layout.addWidget(self.redist_checkbox)
self.redist_amount = QtWidgets.QLineEdit('0' if distribute is None else str(distribute))
redist_layout.addWidget(self.redist_amount)
self._layout.addLayout(redist_layout)
ped_layout = QtWidgets.QHBoxLayout()
self.baseline_checkbox = QtWidgets.QCheckBox('Correct baselines')
self.baseline_checkbox.setCheckState(QtCore.Qt.Checked if pedestal else QtCore.Qt.Unchecked)
ped_layout.addWidget(self.baseline_checkbox)
self.ped_min = QtWidgets.QLineEdit('0' if pedestal is None else str(pedestal[0]))
self.ped_min.setFixedWidth(100)
ped_layout.addWidget(self.ped_min)
self.ped_max = QtWidgets.QLineEdit('50' if pedestal is None else str(pedestal[1]))
self.ped_max.setFixedWidth(100)
ped_layout.addWidget(self.ped_max)
self._layout.addLayout(ped_layout)
buttons = QtWidgets.QDialogButtonBox(QtWidgets.QDialogButtonBox.Ok | QtWidgets.QDialogButtonBox.Cancel, QtCore.Qt.Horizontal, self)
buttons.accepted.connect(self.accept)
buttons.rejected.connect(self.reject)
self._layout.addWidget(buttons)
def reshape_prompt(self):
dialog = QtWidgets.QDialog()
layout = QtWidgets.QFormLayout()
layout.addRow(QtWidgets.QLabel("Choose Plot Grid Shape"))
rowbox,colbox = QtWidgets.QLineEdit(str(self.rows)),QtWidgets.QLineEdit(str(self.cols))
layout.addRow(QtWidgets.QLabel("Rows"),rowbox)
layout.addRow(QtWidgets.QLabel("Cols"),colbox)
buttons = QtWidgets.QDialogButtonBox( QtWidgets.QDialogButtonBox.Ok | QtWidgets.QDialogButtonBox.Cancel, QtCore.Qt.Horizontal, dialog)
buttons.accepted.connect(dialog.accept)
buttons.rejected.connect(dialog.reject)
layout.addWidget(buttons)
dialog.setLayout(layout)
if dialog.exec_() == QtWidgets.QDialog.Accepted:
try:
r = int(rowbox.text())
c = int(colbox.text())
self.reshape(r,c)
except:
print('Invalid input to reshape dialog')
def __init__(self, color, parent=None):
QtWidgets.QHBoxLayout.__init__(self)
assert isinstance(color, QtGui.QColor)
self.lineedit = QtWidgets.QLineEdit(color.name(), parent)
self.lineedit.editingFinished.connect(self.update_color)
self.addWidget(self.lineedit)
self.colorbtn = ColorButton(parent)
self.colorbtn.color = color
self.colorbtn.colorChanged.connect(self.update_text)
self.addWidget(self.colorbtn)
def __init__(self, tsne, cell_clusters, colors, out_dir, pr_res=None, trends_win=None):
super().__init__()
self._main = QtWidgets.QWidget()
self.setCentralWidget(self._main)
self.setAttribute(QtCore.Qt.WA_DeleteOnClose)
layout = QtWidgets.QVBoxLayout(self._main)
self.tsne = tsne
self.pr_res = pr_res
self.cell_clusters = cell_clusters
self.colors = colors
self.out_dir = out_dir
self.pseudotime = 0
self.trends_win = trends_win
self.done_button = QtWidgets.QPushButton("Done")
self.done_button.clicked.connect(self.on_click_done)
layout.addWidget(self.done_button)
if pr_res:
self.setWindowTitle("tSNE -- pseudotime")
self.set_pseudotime = QtWidgets.QLineEdit(self)
layout.addWidget(self.set_pseudotime)
self.set_pseudotime_button = QtWidgets.QPushButton('set pseudotime')
self.set_pseudotime_button.clicked.connect(self._update_pseudotime)
layout.addWidget(self.set_pseudotime_button)
self.slider = QtWidgets.QSlider(Qt.Horizontal)
self.slider.setFocusPolicy(Qt.StrongFocus)
self.slider.setTickPosition(QtWidgets.QSlider.TicksBothSides)
self.slider.setMinimum(0)
self.slider.setMaximum(10000)
self.slider.setTickInterval(1)
self.slider.setSingleStep(1)
self.slider.valueChanged.connect(self._update_tsne)
layout.addWidget(self.slider)
self.pseudotime_cluster_button = QtWidgets.QPushButton('Set pseudotime cluster as cluster')
self.pseudotime_cluster_button.clicked.connect(self._on_pseudotime_cluster_click)
layout.addWidget(self.pseudotime_cluster_button)
else:
self.setWindowTitle("tSNE -- define custom clusters")
tsne_canvas = FigureCanvas(Figure(figsize=(5, 5)))
layout.addWidget(tsne_canvas)
self.addToolBar(QtCore.Qt.BottomToolBarArea,
NavigationToolbar(tsne_canvas, self))
self._tsne_fig = tsne_canvas.figure
self._tsne_ax = tsne_canvas.figure.subplots()
tsne_canvas.mpl_connect('button_release_event', self.on_mouse_click)
fig, self._tsne_ax = palantir.plot.plot_tsne(self.tsne, fig=self._tsne_fig, ax=self._tsne_ax)
self._tsne_ax.figure.canvas.draw()
def __init__(self, color, parent=None):
super().__init__()
assert isinstance(color, QtGui.QColor)
self.lineedit = QtWidgets.QLineEdit(
mcolors.to_hex(color.getRgbF(), keep_alpha=True), parent)
self.lineedit.editingFinished.connect(self.update_color)
self.addWidget(self.lineedit)
self.colorbtn = ColorButton(parent)
self.colorbtn.color = color
self.colorbtn.colorChanged.connect(self.update_text)
self.addWidget(self.colorbtn)
def add_QLineEdit(self, spec):
widget = QtWidgets.QLineEdit()
self.fields[spec['name']] = widget
label_text = spec.get('label', spec['name'])
self.layout.addWidget(QtWidgets.QLabel(label_text))
self.layout.addWidget(widget)
if 'default' in spec:
widget.setText(spec['default'])
if 'autocomplete-list' in spec:
widget.setCompleter(QtWidgets.QCompleter(
spec['autocomplete-list']))
def get_controls_layout(self):
self.controls = QtWidgets.QGroupBox('Image controls')
# min and max values
self.min_label = QtWidgets.QLabel(self)
self.min_label.setText('Min: ')
self.min = QtWidgets.QLineEdit('{:10.7f}'.format(self.vmin), self)
self.min.setToolTip('The minimum value to display')
self.min.returnPressed.connect(self.update_min)
self.max_label = QtWidgets.QLabel(self)
self.max_label.setText('Max: ')
self.max = QtWidgets.QLineEdit('{:10.7f}'.format(self.vmax), self)
self.max.setToolTip('The maxmimum value to display.')
self.max.returnPressed.connect(self.update_max)
# Contour value for scaling
self.contval_label = QtWidgets.QLabel(self)
self.contval_label.setText('Contour value: ')
self.contval = QtWidgets.QLineEdit('{:10.7f}'.format(self.cval), self)
self.contval.setToolTip('Value used to calculate the contour levels.')
self.contval.returnPressed.connect(self.update_contourvalue)
# Contour levels
self.levels_label = QtWidgets.QLabel(self)
self.levels_label.setText('Contour levels: ')
self.levels = QtWidgets.QLineEdit(__arrtostr__(self.contours), self)
self.levels.setToolTip('Contours levels to display ' +
'(in terms of RMS). Should be a list of ' +
'floats separated by commas.')
self.levels.returnPressed.connect(self.update_contourlevels)
# color map
self.colormap_label = QtWidgets.QLabel(self)
self.colormap_label.setText('Colormap: ')
self.colormap = QtWidgets.QLineEdit('{}'.format(self.cmap), self)
self.colormap.setToolTip('The color map to use for the display')
self.colormap.returnPressed.connect(self.update_colormap)
# Contour colors
self.levelcolor_label = QtWidgets.QLabel(self)
self.levelcolor_label.setText('Contour Color: ')
self.levelcolor = QtWidgets.QLineEdit('{}'.format(self.ccolor), self)
self.levelcolor.setToolTip('The color of the contours')
self.levelcolor.returnPressed.connect(self.update_contourcolor)
# create layout
layout = QtWidgets.QGridLayout()
layout.addWidget(self.min_label, 0, 0)
layout.addWidget(self.min, 0, 1)
layout.addWidget(self.max_label, 1, 0)
layout.addWidget(self.max, 1, 1)
layout.addWidget(self.contval_label, 0, 2)
layout.addWidget(self.contval, 0, 3)
layout.addWidget(self.levels_label, 1, 2)
layout.addWidget(self.levels, 1, 3)
layout.addWidget(self.colormap_label, 0, 4)
layout.addWidget(self.colormap, 0, 5)
layout.addWidget(self.levelcolor_label, 1, 4)
layout.addWidget(self.levelcolor, 1, 5)
self.controls.setLayout(layout)
def __init__(self, coords=(0., 0.), EPSG=4326, pEPSG=2193, tEPSG=3857, parent=None):
""""""
QtWidgets.QDialog.__init__(self, parent)
self.setWindowTitle('Set GPS Array Information')
self.setWindowIcon(QtGui.QIcon('kiwi.png'))
self.setMinimumWidth(400)
self.coordsLabel = QtWidgets.QLabel("Coordinates")
self.name1 = QtWidgets.QLineEdit(self)
self.name1.setText(str(coords)[1:-1])
self.EPSGLabel = QtWidgets.QLabel("EPSG")
self.name2 = QtWidgets.QLineEdit(self)
self.name2.setText(str(EPSG))
self.EPSGLabel2 = QtWidgets.QLabel("Local Projected EPSG")
self.name3 = QtWidgets.QLineEdit(self)
self.name3.setText(str(pEPSG))
self.EPSGLabel3 = QtWidgets.QLabel("Target EPSG")
self.name4 = QtWidgets.QLineEdit(self)
self.name4.setText(str(tEPSG))
self.name4.setStatusTip("Save the current display to a PNG file.")
self.activate = QtWidgets.QPushButton("Set")
Box = QtWidgets.QVBoxLayout()
Box.addWidget(self.coordsLabel)
Box.addWidget(self.name1)
Box.addWidget(self.EPSGLabel)
Box.addWidget(self.name2)
Box.addWidget(self.EPSGLabel2)
Box.addWidget(self.name3)
Box.addWidget(self.EPSGLabel3)
Box.addWidget(self.name4)
Box.addWidget(self.activate)
# Now put everything into the frame
self.setLayout(Box)
def __init__(self, parent=None):
super(Page4, self).__init__(parent)
integerValidator = QtGui.QIntValidator(0, 10, self)
comboLabel = QtWidgets.QLabel('Graphic Type:')
dataLabel = QtWidgets.QLabel('Data Directory:')
self.dataLine = QtWidgets.QLineEdit()
dataBtn = QtWidgets.QPushButton('File', self)
dataBtn.clicked.connect(self.getDir)
self.registerField('popDir*', self.dataLine)
allelesLabel = QtWidgets.QLabel('Number of alleles:')
self.allelesLine = QtWidgets.QLineEdit()
self.allelesLine.setValidator(integerValidator)
self.registerField('alleleCount2*', self.allelesLine)
groupsLabel = QtWidgets.QLabel('Number of Groups:')
self.groupsLine = QtWidgets.QLineEdit()
self.groupsLine.setValidator(integerValidator)
self.registerField('groupCount2*', self.groupsLine)
self.b1 = QtWidgets.QCheckBox("Females")
self.b1.setChecked(False)
self.registerField('females', self.b1)
grid = QtWidgets.QGridLayout()
grid.setSpacing(10)
grid.addWidget(dataLabel, 1, 0)
grid.addWidget(self.dataLine, 1, 1)
grid.addWidget(dataBtn, 1, 2)
grid.addWidget(allelesLabel, 2, 0)
grid.addWidget(self.allelesLine, 2, 1)
grid.addWidget(groupsLabel, 3, 0)
grid.addWidget(self.groupsLine, 3, 1)
grid.addWidget(self.b1, 4, 1)
self.setLayout(grid)
def initializePage(self):
groups = int(self.field('groupCount2'))
alleles = int(self.field('alleleCount2'))
integerValidator = QtGui.QIntValidator(0, 10, self)
vbox = self.layout()
for i in range(groups):
hbox1 = QtWidgets.QHBoxLayout()
hbox2 = QtWidgets.QHBoxLayout()
glabel = QtWidgets.QLabel("group " + str(i + 1) + ":")
gname = QtWidgets.QLineEdit()
gname.setText('0')
self.registerField('group' + str(i), gname)
hbox1.addWidget(glabel)
hbox1.addWidget(gname)
for j in range(alleles):
label = QtWidgets.QLabel(str(j + 1) + ":")
line = QtWidgets.QLineEdit()
line.setValidator(integerValidator)
line.setText('0')
self.registerField(str(i) + '-' + str(j), line)
hbox2.addWidget(label)
hbox2.addWidget(line)
vbox.addLayout(hbox1)
vbox.addLayout(hbox2)
def get_print_layout(self):
self.print = QtWidgets.QGroupBox('Save figure')
self.savefile_label = QtWidgets.QLabel('File:', self)
self.savefile = QtWidgets.QLineEdit('./JWSTfilter.pdf', self)
self.savec1 = QtWidgets.QCheckBox('Canvas 1', self)
self.savec2 = QtWidgets.QCheckBox('Canvas 2', self)
self.save = QtWidgets.QPushButton('Save', self)
self.save.clicked.connect(self.save_figures)
layout = QtWidgets.QGridLayout()
layout.addWidget(self.savefile_label, 0, 0)
layout.addWidget(self.savefile, 0, 1, 1, 2)
layout.addWidget(self.savec1, 1, 0, 1, 1)
layout.addWidget(self.savec2, 1, 1, 1, 1)
layout.addWidget(self.save, 1, 2, 1, 1)
self.print.setLayout(layout)
def get_NIRSpec_layout(self):
self.NIRSpec = QtWidgets.QGroupBox('NIRSpec spectral ranges')
self.Nspec = []
for idx, filt in enumerate(self.Nsmodes):
self.Nspec.append(QtWidgets.QCheckBox(filt, self))
self.Nspec.append(QtWidgets.QLabel('Color: ', self))
self.Nspec.append(
QtWidgets.QLineEdit('{:6.4f}'.format(self.Nscolors[idx]),
self))
for idx in np.arange(len(self.Nsmodes)):
self.Nspec[3 * idx].stateChanged.connect(self.update_figures)
self.Nspec[3 * idx + 2].returnPressed.connect(
self.update_Nspeccolor)
self.Nsselectall = QtWidgets.QPushButton('Select all', self)
self.Nsselectall.clicked.connect(self.update_Nsselectall)
# the layout
layout = QtWidgets.QGridLayout()
for idx in np.arange(len(self.Nsmodes)):
for idx2 in np.arange(3):
layout.addWidget(self.Nspec[3 * idx + idx2], idx, idx2)
layout.addWidget(self.Nsselectall, 3 * idx + 1, 0, 1, 2)
self.NIRSpec.setLayout(layout)
def get_MIRIfilters_layout(self):
self.MIRIfilter = QtWidgets.QGroupBox('MIRI filters')
self.Mfilter = []
for idx, filt in enumerate(self.Mfilters):
self.Mfilter.append(QtWidgets.QCheckBox(filt, self))
self.Mfilter.append(QtWidgets.QLabel('Color: ', self))
self.Mfilter.append(
QtWidgets.QLineEdit('{:6.4f}'.format(self.Mfcolors[idx]),
self))
for idx in np.arange(len(self.Mfilters)):
self.Mfilter[3 * idx].stateChanged.connect(self.update_figures)
self.Mfilter[3 * idx + 2].returnPressed.connect(
self.update_Mfiltercolor)
self.Mfselectall = QtWidgets.QPushButton('Select all', self)
self.Mfselectall.clicked.connect(self.update_Mfselectall)
# the layout
layout = QtWidgets.QGridLayout()
for idx in np.arange(len(self.Mfilters)):
for idx2 in np.arange(3):
layout.addWidget(self.Mfilter[3 * idx + idx2], idx, idx2)
layout.addWidget(self.Mfselectall, 3 * idx + 1, 0, 1, 2)
self.MIRIfilter.setLayout(layout)
def get_parameter_layout(self):
self.parameter = QtWidgets.QGroupBox('Model Parameters')
# line edits for all of the parameters
self.nparameters = len(self.qube.initpar)
self.lepar_label = []
self.lepar = []
for idx, key in enumerate(self.qube.initpar.keys()):
self.lepar_label.append(QtWidgets.QLabel(self))
self.lepar_label[idx].setText(key + ': ')
strval = str(self.qube.initpar[key]['Value'])
self.lepar.append(QtWidgets.QLineEdit(strval, self))
# the GO button
self.gobutton = QtWidgets.QPushButton('OK', self)
self.gobutton.clicked.connect(self.update_model)
# layout
layout = QtWidgets.QGridLayout()
for idx in np.arange(self.nparameters):
layout.addWidget(self.lepar_label[idx], idx, 0)
layout.addWidget(self.lepar[idx], idx, 1)
layout.addWidget(self.gobutton, idx + 1, 0, 1, 2)
self.parameter.setLayout(layout)
