def setup_reader(self):
""""Setup the reader in here. This is called after the engine
has been created and started. The engine is available as
self.e. This method is called by setUp().
"""
# Read a OBJ data file.
r = PolyDataReader()
r.initialize(get_example_data('shuttle.obj'))
self.e.add_source(r)
self.bounds = (-7.65, 7.04, -4.68, 4.68, -1.35, 4.16)
def setup_reader(self):
""""Setup the reader in here. This is called after the engine
has been created and started. The engine is available as
self.e. This method is called by setUp().
"""
# Read a SLC data file.
r = PolyDataReader()
r.initialize(get_example_data('nut.slc'))
self.e.add_source(r)
self.bounds = (0.0, 67.0, 0.0, 40.0, 0.0, 58.0)
def setup_reader(self):
""""Setup the reader in here. This is called after the engine
has been created and started. The engine is available as
self.e. This method is called by setUp().
"""
# Read a BYU data file.
r = PolyDataReader()
r.initialize(get_example_data('cow.g'))
self.e.add_source(r)
self.bounds = (-4.445, 5.998, -3.608, 2.760, -1.690, 1.690)
def setup_reader(self):
""""Setup the reader in here. This is called after the engine
has been created and started. The engine is available as
self.e. This method is called by setUp().
"""
# Read a PDB data file.
r = PolyDataReader()
r.initialize(get_example_data('caffeine.pdb'))
self.e.add_source(r)
self.bounds = (3.10, 10.78, -2.39, 4.03, -10.60, -6.31)
def setup_reader(self):
""""Setup the reader in here. This is called after the engine
has been created and started. The engine is available as
self.e. This method is called by setUp().
"""
# Read a Facet data file.
r = PolyDataReader()
r.initialize(get_example_data('clown.facet'))
self.e.add_source(r)
self.bounds = (-0.5, 0.69, -0.49, 0.49, -1.09, 0.5)
def setup_reader(self):
""""Setup the reader in here. This is called after the engine
has been created and started. The engine is available as
self.e. This method is called by setUp().
"""
# Read a STL data file.
r = PolyDataReader()
r.initialize(get_example_data('humanoid_tri.stla'))
self.e.add_source(r)
self.bounds = (0.60, 3.47, -3.96, 3.95, 3.05, 17.39)
def setup_reader(self):
""""Setup the reader in here. This is called after the engine
has been created and started. The engine is available as
self.e. This method is called by setUp().
"""
# Read a BYU data file.
r = PolyDataReader()
r.initialize(get_example_data('cow.g'))
self.e.add_source(r)
self.bounds = (-4.445, 5.998, -3.608, 2.760, -1.690, 1.690)
def setup_reader(self):
""""Setup the reader in here. This is called after the engine
has been created and started. The engine is available as
self.e. This method is called by setUp().
"""
# Read a OBJ data file.
r = PolyDataReader()
r.initialize(get_example_data('shuttle.obj'))
self.e.add_source(r)
self.bounds = (-7.65, 7.04, -4.68, 4.68, -1.35, 4.16)
def setup_reader(self):
""""Setup the reader in here. This is called after the engine
has been created and started. The engine is available as
self.e. This method is called by setUp().
"""
# Read a Facet data file.
r = PolyDataReader()
r.initialize(get_example_data('clown.facet'))
self.e.add_source(r)
self.bounds = (-0.5, 0.69, -0.49, 0.49, -1.09, 0.5)
def setup_reader(self):
""""Setup the reader in here. This is called after the engine
has been created and started. The engine is available as
self.e. This method is called by setUp().
"""
# Read a SLC data file.
r = PolyDataReader()
r.initialize(get_example_data('nut.slc'))
self.e.add_source(r)
self.bounds = (0.0, 67.0, 0.0, 40.0, 0.0, 58.0)
def setup_reader(self):
""""Setup the reader in here. This is called after the engine
has been created and started. The engine is available as
self.e. This method is called by setUp().
"""
# Read a STL data file.
r = PolyDataReader()
r.initialize(get_example_data('humanoid_tri.stla'))
self.e.add_source(r)
self.bounds = (0.60, 3.47, -3.96, 3.95, 3.05, 17.39)
def setup_reader(self):
""""Setup the reader in here. This is called after the engine
has been created and started. The engine is available as
self.e. This method is called by setUp().
"""
# Read a PDB data file.
r = PolyDataReader()
r.initialize(get_example_data('caffeine.pdb'))
self.e.add_source(r)
self.bounds = (3.10, 10.78, -2.39, 4.03, -10.60, -6.31)
def setup_reader(self):
""""Setup the reader in here. This is called after the engine
has been created and started. The engine is available as
self.e. This method is called by setUp().
"""
# Read a Particle data file.
r = PolyDataReader()
r.initialize(get_example_data('Particles.raw'))
self.e.add_source(r)
r.reader.set(data_byte_order='big_endian', data_type='float', file_type='binary')
self.bounds = (817.33, 826.09, 545.02, 571.02, 1443.48, 1511.18)
def setup_reader(self):
""""Setup the reader in here. This is called after the engine
has been created and started. The engine is available as
self.e. This method is called by setUp().
"""
# Read a Particle data file.
r = PolyDataReader()
r.initialize(get_example_data('Particles.raw'))
self.e.add_source(r)
r.reader.set(data_byte_order='big_endian', data_type='float', file_type='binary')
self.bounds = (817.33, 826.09, 545.02, 571.02, 1443.48, 1511.18)
def make_plot(phi_min = 0, phi_max = 2.*np.pi):
vmec_filename = '/home/srh112/code/python/h1_eq_generation/results7/kh0.100-kv1.000fixed/wout_kh0.100-kv1.000fixed.nc'
f = mlab.figure(1, fgcolor=(0, 0, 0), bgcolor=(1, 1, 1))
from mayavi.sources.poly_data_reader import PolyDataReader
a = PolyDataReader()
a.initialize("/home/srh112/code/python/python-h1/h1/h1model/helical.stl")
e = mlab.get_engine()
e.add_source(a)
from mayavi.modules.surface import Surface
s = Surface()
e.add_module(s)
x, y, z, B = plot_vmec(vmec_filename=vmec_filename, phi_min = phi_min, phi_max = phi_max)
#x, y, z, B = extract_VMEC_surface_data(vmec_filename, s_ind=-1, phi_min = phi_min, phi_max = phi_max)
#pts = mlab.mesh(x[:,:], y[:,:], z[:,:], opacity = 1.0, scalars = B, colormap = 'hot', representation='surface')
#plot the TFC's
include_coils = range(5,27,1)
tfc_thickness=0.075;tfc_width=0.15; tfc_radius = 0.383
#tfc_mesh_props = {'opacity':0.3,'color':(1,0.,0.)}
tfc_mesh_props = {'opacity':1.0,'color':(0.5,0.5,0.5)}
plot_tfc(include_coils, tfc_thickness=0.075, tfc_width=0.15, tfc_radius = 0.383, tfc_mesh_props = None)
pfc_mesh_props = {'opacity':1.,'color':(0.5,0.5,0.5)}
plot_pfc(pfc_thickness = 0.11, pfc_width = 0.11, pfc_radius = 1.0, pfc_mesh_props=pfc_mesh_props)
ovc_mesh_props = {'opacity':1,'color':(255/255., 255/255., 51/255.)}
#plot_ovc(ovc_mesh_props=ovc_mesh_props)
ivc_mesh_props = {'opacity':1,'color':(0.5,0.5,0.5)}
#plot_ivc(ivc_mesh_props=ivc_mesh_props)
#Plot the HMA and poloidal Mirnov arrays as cubes joined by a line
show_hma = 1; show_pol_array1 = 1; show_pol_array2 = 1
HMA_x, HMA_y, HMA_z, pol_array1_x, pol_array1_y, pol_array1_z, pol_array2_x, pol_array2_y, pol_array2_z = mirnov_locations()
if show_hma:
mlab.plot3d(HMA_x, HMA_y, HMA_z,line_width=1,tube_radius=0.01)
#mlab.points3d(HMA_x, HMA_y, HMA_z, scale_mode='none', scale_factor = 0.04, color=(0.5,0.5,0.5),mode='cube')
mlab.points3d(HMA_x, HMA_y, HMA_z, scale_mode='none', scale_factor = 0.04, color=(0,0.,1),mode='cube')
if show_pol_array1:
mlab.plot3d(pol_array1_x, pol_array1_y, pol_array1_z,line_width=1,tube_radius=0.02)
mlab.points3d(pol_array1_x, pol_array1_y, pol_array1_z, scale_mode='none', scale_factor = 0.04, color=(0,1,0),mode='cube')
if show_pol_array2:
mlab.plot3d(pol_array2_x, pol_array2_y, pol_array2_z,line_width=1,tube_radius=0.02)
mlab.points3d(pol_array2_x, pol_array2_y, pol_array2_z, scale_mode='none', scale_factor = 0.04, color=(0.,1.,0.),mode='cube')
return x, y, z
def read(self, fname, **kwds):
""" read a ply file """
try:
from mayavi.sources.poly_data_reader import PolyDataReader
except:
from enthought.mayavi.sources.poly_data_reader import PolyDataReader
my_reader = PolyDataReader()
return generic_vtk_read(my_reader, fname, **kwds)