def dumpClinicalTablesToCsv(self, tempDir):
log.info('Dumping clinical_item and clinical_item_category to CSV')
DBUtil.dumpTableToCsv('clinical_item',
'{}/clinical_item.csv'.format(tempDir))
DBUtil.dumpTableToCsv('clinical_item_category',
'{}/clinical_item_category.csv'.format(tempDir))
def dumpItemCollectionTablesToCsv(self, tempDir):
log.info('Dumping item_collection_item and item_collection to CSV')
DBUtil.dumpTableToCsv('item_collection_item',
'{}/item_collection_item.csv'.format(tempDir))
DBUtil.dumpTableToCsv('item_collection',
'{}/item_collection.csv'.format(tempDir))
def dumpPatientItemToCsv(self, tempDir, batchCounter=999):
log.info(
'Dumping patient_item for batch {} to CSV'.format(batchCounter))
DBUtil.dumpTableToCsv(
'patient_item',
'{}/{}_patient_item.csv'.format(tempDir, batchCounter))
def dumpPatientItemCollectionLinkToCsv(self, tempDir, batchCounter=999):
log.info(
'Dumping patient_item_collection_link for batch {} to CSV'.format(
batchCounter))
DBUtil.dumpTableToCsv(
'patient_item_collection_link',
'{}/{}_patient_item_collection_link.csv'.format(
tempDir, batchCounter))