Esempi in Python per push_up_tree_hits

Esempio n. 1

File: test_metagenomics.py Progetto: tianyabeef/viral-ngs

def test_push_up_tree_hits(parents):
    hits = Counter({1: 3, 3: 5, 6: 3, 7: 3, 13: 5})
    with pytest.raises(AssertionError):
        metagenomics.push_up_tree_hits(parents, hits)

    expected = hits.copy()
    assert metagenomics.push_up_tree_hits(parents, hits.copy(), min_support=1) == expected

    expected = Counter({3: 5, 6: 6, 13: 5})
    assert metagenomics.push_up_tree_hits(parents, hits.copy(), min_support=5) == expected

    assert (metagenomics.push_up_tree_hits(parents, hits.copy(), min_support=10) ==
            Counter({6: 11}))
    assert (metagenomics.push_up_tree_hits(parents, hits.copy(), min_support=18) ==
            Counter({1: 19}))
    assert (metagenomics.push_up_tree_hits(parents, hits.copy(), min_support_percent=100) ==
            Counter({1: 19}))

Esempio n. 2

File: test_metagenomics.py Progetto: sudarshangc/viral-ngs

def test_push_up_tree_hits(parents):
    hits = Counter({1: 3, 3: 5, 6: 3, 7: 3, 13: 5})
    with pytest.raises(AssertionError):
        metagenomics.push_up_tree_hits(parents, hits)

    expected = hits.copy()
    assert metagenomics.push_up_tree_hits(parents, hits.copy(), min_support=1) == expected

    expected = Counter({3: 5, 6: 6, 13: 5})
    assert metagenomics.push_up_tree_hits(parents, hits.copy(), min_support=5) == expected

    assert (metagenomics.push_up_tree_hits(parents, hits.copy(), min_support=10) ==
            Counter({6: 11}))
    assert (metagenomics.push_up_tree_hits(parents, hits.copy(), min_support=18) ==
            Counter({1: 19}))
    assert (metagenomics.push_up_tree_hits(parents, hits.copy(), min_support_percent=100) ==
            Counter({1: 19}))