def convert_to_nc(variables):
for variable in variables:
filename = "{0}.nc".format(variable)
dim = {
'time': range(niter),
'z': range(ktot),
'y': range(jtot),
'x': range(itot)
}
if variable is 'u':
dim['xh'] = dim.pop('x')
if variable is 'v':
dim['yh'] = dim.pop('y')
if variable is 'w':
dim['zh'] = dim.pop('z')
try:
ncfile = mht.Create_ncfile(grid, filename, variable, dim,
precision, compression)
# Loop through the files and read 3d field
for t in range(niter):
otime = round((starttime + t * sampletime) / 10**iotimeprec)
f_in = "{0:}.{1:07d}".format(variable, otime)
try:
fin = mht.Read_binary(grid, f_in)
except Exception as ex:
print(ex)
raise Exception(
'Stopping: cannot find file {}'.format(f_in))
print("Processing %8s, time=%7i" % (variable, otime))
ncfile.dimvar['time'][t] = otime * 10**iotimeprec
if (perslice):
for k in range(ktot):
ncfile.var[t, k, :, :] = fin.read(itot * jtot)
else:
ncfile.var[t, :, :, :] = fin.read(itot * jtot * ktot)
fin.close()
ncfile.close()
except Exception as ex:
print(ex)
print("Failed to create %s" % filename)
def convert_to_nc(variables):
for time in range(starttime,endtime, sampletime):
otime = int(round(time / 10**iotimeprec))
if not glob.glob('*.{0:07d}'.format(otime))
endtime = time - sampletime
break
for variable in variables:
try:
filename = "{0}.nc".format(variable)
dim = {'time' : range(niter), 'z' : range(ktot), 'y' : range(jtot), 'x': range(itot)}
if variable is 'u':
dim['xh'] = dim.pop('x')
if variable is 'v':
dim['yh'] = dim.pop('y')
if variable is 'w':
dim['zh'] = dim.pop('z')
ncfile = mht.Create_ncfile(grid, filename, variable, dim, precision, compression)
# Loop through the files and read 3d field
for t in range(niter):
otime = round((starttime + t*sampletime) / 10**iotimeprec)
f_in = "{0:}.{1:07d}".format(variable, otime)
print(f_in)
try:
fin = mht.Read_binary(grid, f_in)
except:
print('Stopping: cannot find file {}'.format(f_in))
ncfile.sync()
stop = True
break
print("Processing %8s, time=%7i"%(variable, otime))
ncfile.dimvar['time'][t] = otime * 10**iotimeprec
if (perslice):
for k in range(ktot):
ncfile.var[t,k,:,:] = fin.read(itot * jtot)
else:
ncfile.var[t,:,:,:] = fin.read(itot * jtot * ktot)
fin.close()
ncfile.close()
except:
def convert_to_nc(variables):
# Loop over the different variables and crosssections
for variable in variables:
for mode in modes:
try:
otime = int(round(starttime / 10**iotimeprec))
if os.path.isfile("{0}.xy.{1:07d}".format(variable, otime)):
if mode != 'xy':
continue
at_surface = True
else:
at_surface = False
filename = "{0}.{1}.nc".format(variable, mode)
if not at_surface:
if indexes == None:
indexes_local = mht.get_cross_indices(variable, mode)
else:
indexes_local = indexes
#dim = {'time' : range(niter), 'z' : range(ktot), 'y' : range(jtot), 'x' : range(itot)}
dim = collections.OrderedDict()
dim['time'] = range(niter)
dim['z'] = range(ktot)
dim['y'] = range(jtot)
dim['x'] = range(itot)
if at_surface:
dim.pop('z')
n = itot * jtot
indexes_local = [-1]
elif mode == 'xy':
dim.update({'z': indexes_local})
n = itot * jtot
elif mode == 'xz':
dim.update({'y': indexes_local})
n = itot * ktot
elif mode == 'yz':
dim.update({'x': indexes_local})
n = ktot * jtot
if variable is 'u':
dim['xh'] = dim.pop('x')
if variable is 'v':
dim['yh'] = dim.pop('y')
if variable is 'w':
dim['zh'] = dim.pop('z')
ncfile = mht.Create_ncfile(grid, filename, variable, dim,
precision, compression)
for t in range(niter):
for k in range(len(indexes_local)):
index = indexes_local[k]
otime = int(
round(
(starttime + t * sampletime) / 10**iotimeprec))
if at_surface:
f_in = "{0}.{1}.{2:07d}".format(
variable, mode, otime)
else:
f_in = "{0:}.{1}.{2:05d}.{3:07d}".format(
variable, mode, index, otime)
try:
fin = mht.Read_binary(grid, f_in)
except Exception as ex:
print(ex)
raise Exception(
'Stopping: cannot find file {}'.format(f_in))
print("Processing %8s, time=%7i, index=%4i" %
(variable, otime, index))
ncfile.dimvar['time'][t] = otime * 10**iotimeprec
if at_surface:
ncfile.var[t, :, :] = fin.read(n)
elif mode == 'xy':
ncfile.var[t, k, :, :] = fin.read(n)
elif mode == 'xz':
ncfile.var[t, :, k, :] = fin.read(n)
elif mode == 'yz':
ncfile.var[t, :, :, k] = fin.read(n)
fin.close()
ncfile.close()
except Exception as ex:
print(ex)
print("Failed to create %s" % filename)