def test_compress_hmm(self):
# .i1i file is different from run to run. skip it.
suffix = 'h3f'
with open('.'.join([self.hmm_fp, suffix]), 'rb') as f:
exp = f.read()
res = hmmpress_hmm(self.hmm_fp, True)
res['StdOut'].close()
res['StdErr'].close()
with open('.'.join([self.hmm_fp, suffix]), 'rb') as f:
self.assertEqual(f.read(), exp)
with self.assertRaisesRegex(
ApplicationError, r'Error: Looks like .* is already pressed'):
hmmpress_hmm(self.hmm_fp)
def test_compress_hmm(self):
# .i1i file is different from run to run. skip it.
suffix = 'h3f'
with open('.'.join([self.hmm_fp, suffix]), 'rb') as f:
exp = f.read()
res = hmmpress_hmm(self.hmm_fp, True)
res['StdOut'].close()
res['StdErr'].close()
with open('.'.join([self.hmm_fp, suffix]), 'rb') as f:
self.assertEqual(f.read(), exp)
with self.assertRaisesRegex(
ApplicationError,
r'Error: Looks like .* is already pressed'):
hmmpress_hmm(self.hmm_fp)
def test_compress_hmm(self):
# .i1i file is different from run to run. skip it.
suffices = ('h3f', 'h3m', 'h3p')
exp = []
for i in suffices:
with open('.'.join([self.hmm_fp, i]), 'rb') as f:
exp.append(f.read())
res = hmmpress_hmm(self.hmm_fp, True)
res['StdOut'].close()
res['StdErr'].close()
for i, e in zip(suffices, exp):
with open('.'.join([self.hmm_fp, i]), 'rb') as f:
self.assertEqual(f.read(), e)
def test_hmmpress_hmm_exist(self):
with self.assertRaisesRegex(
ApplicationError,
r'Error: Looks like .* is already pressed'):
hmmpress_hmm(self.hmm_fp)