def test_scrub_bad_sample(self):
samp1 = 'd8592c74-85f0-2135-e040-8a80115d6401' # 000001766
with Transaction() as t:
acct1, src1 = self._get_source_from_sample(t, samp1)
sr = SampleRepo(t)
with self.assertRaises(RepoException):
sr.scrub(acct1, src1, src1)
def delete_account(account_id, token_info):
validate_admin_access(token_info)
with Transaction() as t:
acct_repo = AccountRepo(t)
src_repo = SourceRepo(t)
samp_repo = SampleRepo(t)
sar_repo = SurveyAnswersRepo(t)
acct = acct_repo.get_account(account_id)
if acct is None:
return jsonify(message="Account not found", code=404), 404
else:
# the account is already scrubbed so let's stop early
if acct.account_type == 'deleted':
return None, 204
sample_count = 0
sources = src_repo.get_sources_in_account(account_id)
for source in sources:
samples = samp_repo.get_samples_by_source(account_id, source.id)
has_samples = len(samples) > 0
sample_count += len(samples)
for sample in samples:
# we scrub rather than disassociate in the event that the
# sample is in our freezers but not with an up-to-date scan
samp_repo.scrub(account_id, source.id, sample.id)
surveys = sar_repo.list_answered_surveys(account_id, source.id)
if has_samples:
# if we have samples, we need to scrub survey / source
# free text
for survey_id in surveys:
sar_repo.scrub(account_id, source.id, survey_id)
src_repo.scrub(account_id, source.id)
else:
# if we do not have associated samples, then the source
# is safe to delete
for survey_id in surveys:
sar_repo.delete_answered_survey(account_id, survey_id)
src_repo.delete_source(account_id, source.id)
# an account is safe to delete if there are no associated samples
if sample_count > 0:
acct_repo.scrub(account_id)
else:
acct_repo.delete_account(account_id)
t.commit()
return None, 204
def test_scrub(self):
samp1 = 'd8592c74-85f0-2135-e040-8a80115d6401' # 000001766
with Transaction() as t:
acct1, src1 = self._get_source_from_sample(t, samp1)
sr = SampleRepo(t)
# get original source associations
src1_sample = sr.get_samples_by_source(acct1, src1)[0]
res = sr.scrub(acct1, src1, src1_sample.id)
self.assertTrue(res)
obs_sample = sr.get_samples_by_source(acct1, src1)[0]
self.assertNotEqual(src1_sample.notes, obs_sample.notes)