def test_get_host_params(sim_config):
"""Find host star parameters from param file."""
simulators = sim_config
star = "test"
simulators.paths["parameters"] = "tests/testdata"
params = param_file.get_host_params(star)
assert len(params) == 3
assert params == (5340, 4.65, -0.22)
def main(database, echo=False, mode="parabola"):
path, star, obsnum, chip = decompose_database_name(database)
os.makedirs(os.path.join(path, "plots"),
exist_ok=True) # make dir for plots
teff, logg, fe_h = closest_model_params(*get_host_params(star))
params = {
"path": path,
"star": star,
"obsnum": obsnum,
"chip": chip,
"teff": teff,
"logg": logg,
"fe_h": fe_h
}
sqlite_db = 'sqlite:///{}'.format(database)
try:
engine = sa.create_engine(sqlite_db, echo=echo)
table_names = engine.table_names()
except Exception as e:
print("\nAccessing sqlite_db = {}\n".format(sqlite_db))
print("cwd =", os.getcwd())
raise e
print("Table names in database =", engine.table_names())
if len(table_names) == 1:
tb_name = table_names[0]
else:
raise ValueError("Database has two many tables {}".format(table_names))
db_table = load_sql_table(database)
print("Mode =", mode)
if mode == "fixed_host_params":
fix_host_parameters_reduced_gamma(engine, params, tb_name)
fix_host_parameters(engine, params, tb_name)
elif mode == "param_limits":
get_column_limits(engine, params, tb_name)
elif mode == "parabola":
parabola_plots(db_table, params)
elif mode == "smallest_chi2":
smallest_chi2_values(engine, params, tb_name)
elif mode == "contour":
alpha_rv_contour(engine, params, tb_name)
elif mode == "contour":
alpha_rv_contour_old(engine, params, tb_name)
elif mode == "test":
test_figure(engine, params, tb_name)
print("Done")
return 0
def main(star, obsnum, chip, suffix="", echo=False):
database = os.path.join(
simulators.paths["output_dir"], star, "iam",
"{0}-{1}_{2}_iam_chisqr_results{3}.db".format(star, obsnum, chip,
suffix))
path, star, obsnum, chip = decompose_database_name(database)
os.makedirs(os.path.join(path, "plots"), exist_ok=True)
save_name = os.path.join(
path, "{0}_iam_all_observation_min_chi2{1}.tsv".format(star, suffix))
teff, logg, fe_h = closest_model_params(*get_host_params(star))
params = {
"path": path,
"star": star,
"obsnum": obsnum,
"chip": chip,
"teff": teff,
"logg": logg,
"fe_h": fe_h
}
# Hack to run from editor
if os.getcwd().endswith("companion_simulations/bin"):
database = "../" + database
save_name = "../" + save_name
if os.path.exists(database):
engine = sa.create_engine('sqlite:///{0}'.format(database), echo=echo)
else:
raise IOError("Database does not exist.")
table_names = engine.table_names()
if len(table_names) == 1:
tb_name = table_names[0]
else:
raise ValueError(
"Database has two many tables {0}".format(table_names))
query = """SELECT * FROM {0}
WHERE (teff_1 = {1} AND logg_1 = {2} AND feh_1 = {3})
ORDER BY chi2 LIMIT 1
""".format(tb_name, params["teff"], params["logg"],
params["fe_h"])
df = pd.read_sql(sa.text(query), engine)
df["obsnum"] = obsnum
df["chip"] = chip
columns = [
"obsnum", "chip", "teff_1", "logg_1", "feh_1", "teff_2", "logg_2",
"feh_2", "alpha", "rv", "gamma", "chi2"
]
if os.path.exists(save_name):
df.to_csv(save_name,
columns=columns,
sep='\t',
mode="a",
index=False,
header=False)
else:
df.to_csv(save_name,
columns=columns,
sep='\t',
mode="a",
index=False,
header=True)
return save_name
def main(star,
obsnum,
suffix=None,
echo=False,
mode="parabola",
verbose=False,
npars=3):
star = star.upper()
suffix = "" if suffix is None else suffix
database = os.path.join(
simulators.paths["output_dir"], star, "iam",
"{0}-{1}_coadd_iam_chisqr_results{2}.db".format(star, obsnum, suffix))
if verbose:
print("Database name ", database)
print("Database exists", os.path.isfile(database))
if not os.path.isfile(database):
raise IOError("Database '{0}' does not exist.".format(database))
path, dbstar, db_obsnum, chip = decompose_database_name(database)
assert dbstar == star, "{} == {}".format(dbstar, star)
assert str(db_obsnum) == str(obsnum), "{} == {}".format(db_obsnum, obsnum)
assert chip == "coadd", "{} == {}".format(chip, "coadd")
os.makedirs(os.path.join(path, "plots"),
exist_ok=True) # make dir for plots
teff, logg, fe_h = closest_model_params(*get_host_params(star))
params = {
"path": path,
"star": star,
"obsnum": obsnum,
"chip": chip,
"suffix": suffix,
"teff": int(teff),
"logg": float(logg),
"fe_h": float(fe_h),
"npars": npars
}
db_table = load_sql_table(database, verbose=verbose, echo=echo)
# Put pixel counts in params
params["npix"] = get_npix_values(db_table)
if verbose:
print("Mode =", mode)
try:
if mode == "fixed_host_params":
try:
fix_host_parameters_reduced_gamma(db_table, params)
fix_host_parameters(db_table, params)
except Exception as e:
print(e)
elif mode == "param_limits":
get_column_limits(db_table, params)
elif mode == "parabola":
parabola_plots(db_table, params)
elif mode == "smallest_chi2":
smallest_chi2_values(db_table, params)
elif mode == "contour":
contours(db_table, params)
elif mode == "test":
test_figure(db_table, params)
elif mode == "rvplot":
rv_plot(db_table, params)
elif mode == "chi2_parabola":
chi2_parabola_plots(db_table, params)
chi2_individual_parabola_plots(db_table, params)
elif mode == "compare_spectra":
compare_spectra(db_table, params)
elif mode == "contrast":
contrast_iam_results(db_table, params)
elif mode == "all":
try:
fix_host_parameters_reduced_gamma(db_table, params)
fix_host_parameters(db_table, params)
except:
pass
plt.close("all")
try:
get_column_limits(db_table, params)
except:
pass
plt.close("all")
try:
smallest_chi2_values(db_table, params)
except:
pass
plt.close("all")
try:
parabola_plots(db_table, params)
except:
pass
plt.close("all")
try:
test_figure(db_table, params)
except:
pass
plt.close("all")
try:
chi2_parabola_plots(db_table, params)
except:
pass
plt.close("all")
try:
chi2_individual_parabola_plots(db_table, params)
except:
pass
plt.close("all")
try:
compare_spectra(db_table, params)
except:
pass
plt.close("all")
try:
contours(db_table, params)
except:
pass
plt.close("all")
try:
contrast_iam_results(db_table, params)
except:
pass
plt.close("all")
else:
warnings.warn("Incorrect Mode in iam analysis")
except Exception as e:
print(e)
plt.close("all")
return 1
plt.close("all")
print("Done")
return 0