def _minimap_reads_to_all_ref_seqs(clusters_tsv,
ref_fasta,
reads_1,
reads_2,
outprefix,
verbose=False):
got = minimap_ariba.minimap_ariba(clusters_tsv, ref_fasta, reads_1,
reads_2, outprefix)
if (got != 0):
raise Error('Error running minimap. Cannot continue')
def _minimap_reads_to_all_ref_seqs(clusters_tsv, ref_fasta, reads_1, reads_2, outprefix, verbose=False):
got = minimap_ariba.minimap_ariba(clusters_tsv, ref_fasta, reads_1, reads_2, outprefix)
if (got != 0):
raise Error('Error running minimap. Cannot continue')